BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0703600 Os01g0703600|AK065538
(429 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0703600 Similar to Mu1 adaptin 864 0.0
Os05g0543100 Similar to Clathrin coat assembly protein AP47... 827 0.0
Os02g0690700 Clathrin adaptor complex, medium chain family ... 339 3e-93
Os07g0620300 Clathrin adaptor complex, medium chain family ... 264 8e-71
AK062296 169 3e-42
Os05g0383100 Clathrin adaptor complex, medium chain family ... 155 4e-38
>Os01g0703600 Similar to Mu1 adaptin
Length = 429
Score = 864 bits (2233), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/429 (97%), Positives = 418/429 (97%)
Query: 1 MAGAVSALFLLDIKGRVLVWRDYRGDVSALQAERFFTKLLDKEGDSEAHSPVVYDDAGVT 60
MAGAVSALFLLDIKGRVLVWRDYRGDVSALQAERFFTKLLDKEGDSEAHSPVVYDDAGVT
Sbjct: 1 MAGAVSALFLLDIKGRVLVWRDYRGDVSALQAERFFTKLLDKEGDSEAHSPVVYDDAGVT 60
Query: 61 YMFIQHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDE 120
YMFIQHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDE
Sbjct: 61 YMFIQHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDE 120
Query: 121 MMDFGYPQYTEAKILSEFIKTDAYRMEVSQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVE 180
MMDFGYPQYTEAKILSEFIKTDAYRMEVSQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVE
Sbjct: 121 MMDFGYPQYTEAKILSEFIKTDAYRMEVSQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVE 180
Query: 181 SVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRATKGKAIDLDDI 240
SVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRATKGKAIDLDDI
Sbjct: 181 SVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRATKGKAIDLDDI 240
Query: 241 KFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIEKHSRSRIELMVK 300
KFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIEKHSRSRIELMVK
Sbjct: 241 KFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIEKHSRSRIELMVK 300
Query: 301 ARSQFKERSTATNVEIEVPVPSDATNPNIRTSMGSAAYAPERDAMVWKVKSFPGGKDYMC 360
ARSQFKERSTATNVEIEVPVPSDATNPNIRTSMGSAAYAPERDAMVWKVKSFPGGKDYMC
Sbjct: 301 ARSQFKERSTATNVEIEVPVPSDATNPNIRTSMGSAAYAPERDAMVWKVKSFPGGKDYMC 360
Query: 361 RAEFSLPSITXXXXXXXXXXXIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITM 420
RAEFSLPSIT IRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITM
Sbjct: 361 RAEFSLPSITAEEAAPEKKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITM 420
Query: 421 AGEYELRLI 429
AGEYELRLI
Sbjct: 421 AGEYELRLI 429
>Os05g0543100 Similar to Clathrin coat assembly protein AP47 (Clathrin coat
associated protein AP47) (Golgi adaptor AP-1 47 kDa
protein) (HA1 47 kDa subunit) (Clathrin assembly protein
assembly protein complex 1 medium chain) (Uncoordinated
protein 101)
Length = 430
Score = 827 bits (2136), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/428 (92%), Positives = 408/428 (95%)
Query: 2 AGAVSALFLLDIKGRVLVWRDYRGDVSALQAERFFTKLLDKEGDSEAHSPVVYDDAGVTY 61
AGAVSALFLLDIKGRVLVWRDYRGDVSALQAERFFTKLLDKE D+E SPVV+DDAGV+Y
Sbjct: 3 AGAVSALFLLDIKGRVLVWRDYRGDVSALQAERFFTKLLDKESDAEVLSPVVHDDAGVSY 62
Query: 62 MFIQHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEM 121
MFIQHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEM
Sbjct: 63 MFIQHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEM 122
Query: 122 MDFGYPQYTEAKILSEFIKTDAYRMEVSQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVES 181
MDFGYPQYTEA ILSEFIKTDAYRMEV+QRPPMAVTNAVSWRSEGIRYKKNEVFLDVVES
Sbjct: 123 MDFGYPQYTEAMILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVES 182
Query: 182 VNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRATKGKAIDLDDIK 241
VNILVNSNGQIVRSDV+G LKMRT+LSGMPECKLGLNDRVLLEAQGR TKGKAIDLDDIK
Sbjct: 183 VNILVNSNGQIVRSDVIGELKMRTFLSGMPECKLGLNDRVLLEAQGRTTKGKAIDLDDIK 242
Query: 242 FHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIEKHSRSRIELMVKA 301
FHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQ+EKHSRSRI++ VK
Sbjct: 243 FHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQVEKHSRSRIQITVKT 302
Query: 302 RSQFKERSTATNVEIEVPVPSDATNPNIRTSMGSAAYAPERDAMVWKVKSFPGGKDYMCR 361
RSQFKERSTATNVEIEVPVP D+TNPNIRTSMGSAAYAPERDAMVWK+KSFPGGK+YMCR
Sbjct: 303 RSQFKERSTATNVEIEVPVPEDSTNPNIRTSMGSAAYAPERDAMVWKIKSFPGGKEYMCR 362
Query: 362 AEFSLPSITXXXXXXXXXXXIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMA 421
AEFSLPSIT IRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMA
Sbjct: 363 AEFSLPSITSEDGMPEKKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMA 422
Query: 422 GEYELRLI 429
GEYELRLI
Sbjct: 423 GEYELRLI 430
>Os02g0690700 Clathrin adaptor complex, medium chain family protein
Length = 438
Score = 339 bits (869), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 181/441 (41%), Positives = 270/441 (61%), Gaps = 18/441 (4%)
Query: 1 MAGAVSALFLLDIKGRVLVWRDYRGDVSALQAERFFTKLLDKEGDSEAHSPVVYDDAGVT 60
M A SA++ L+++G VL+ R YR DV + F ++ + E + V G +
Sbjct: 1 MPVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRMHIMQTK---ELGTCPVRQIGGCS 57
Query: 61 YMFIQHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFE-ELEEESLRDNFVVVYELLD 119
+++++ +NV+++ N N A F+ V +FK YF +E+++R+NFV++YELLD
Sbjct: 58 FLYMRISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLD 117
Query: 120 EMMDFGYPQYTEAKILSEFIKTDAYRMEVSQRPP--------MAVTNAVSWRSEGIRYKK 171
E+MDFGYPQ +IL +I + R S +P + VT AV WR EG+ YKK
Sbjct: 118 EIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPSDKPVPNATLQVTGAVGWRREGLMYKK 177
Query: 172 NEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGR--- 228
NEVFLD+VESVN+L++S G ++R DV G + M+ +LSGMP+ KLGLND++ LE + +
Sbjct: 178 NEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKEAQLKS 237
Query: 229 --ATKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQ 286
A GK I+LDD+ FHQCV L RF +++T+SF+PPDG F+LM YR++ V V
Sbjct: 238 RPAKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPT 297
Query: 287 IEKHSRSRIELMVKARSQFKERSTATNVEIEVPVPSDATNPNIRTSMGSAAYAPERDAMV 346
I++ R+R+E+ VK +S F + A V ++VPVP + +T+ G A Y D++V
Sbjct: 298 IKELGRTRMEINVKVKSVFGAKMFALGVVVKVPVPKQTAKTSFQTTSGKAKYNASIDSLV 357
Query: 347 WKVKSFPGGKDYMCRAEFSLPSITXXXXXXXXXXXIRVKFEIPYFTVSGIQVRYLKIIEK 406
WK++ FPG + AE L S T I+++F++P FT SG++VR+LK+ EK
Sbjct: 358 WKIRKFPGQTEATMSAEVELIS-TMGEKKSWNRPPIQMEFQVPMFTASGLRVRFLKVWEK 416
Query: 407 SGYQALPWVRYITMAGEYELR 427
SGY + WVRYIT AG YE+R
Sbjct: 417 SGYNTVEWVRYITRAGSYEIR 437
>Os07g0620300 Clathrin adaptor complex, medium chain family protein
Length = 451
Score = 264 bits (675), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 150/452 (33%), Positives = 242/452 (53%), Gaps = 30/452 (6%)
Query: 5 VSALFLLDIKGRVLVWRDYRGDVSALQAERFFTKLLDKEGDSEAHSPVVYDDAGVTYMFI 64
+S F+L +G +V+RDYRG+V AE FF K+ D +P V++ GV Y+ +
Sbjct: 2 ISQFFVLSQRGDHIVFRDYRGEVPKGSAEIFFRKVKFWNDDEAEEAPPVFNVDGVNYIHV 61
Query: 65 QHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDF 124
+ +F + + N + + +L L R+ V K Y L E+SLR NF++VYELLDE++DF
Sbjct: 62 KVAGLFFVVTTMVNVSPSLLLELLQRIARVTKDYLGVLNEDSLRKNFILVYELLDEVIDF 121
Query: 125 GYPQYTEAKILSEFIKTDAYRMEVSQRPPM----------------AVTNAVSWRSEGIR 168
GYPQ T ++L +I + ++ + PP+ AVT +V G +
Sbjct: 122 GYPQTTSTEVLKSYIFNEPIMVDAGRLPPLGPAAMFMQGTKRMPGTAVTKSVVATEPGGK 181
Query: 169 YKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGR 228
K+ E+F+D++E +++ +S+G I+ S++ G ++M++YL+G PE +L LN+ + + G
Sbjct: 182 -KREEIFVDIIERISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIGRTGS 240
Query: 229 ATK-------GKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLI 281
++ G A+ LDD FH+ V L F+ DRT+ IPPDG F +M YR++ + KP
Sbjct: 241 SSYDYRSSSGGGAVILDDCNFHESVHLDSFDIDRTLHLIPPDGEFAVMNYRITQEFKPPF 300
Query: 282 WVEAQIEKHSRSRIELMVKARSQFKERSTATNVEIEVPVPSDATNPNIRTSMGSAA---- 337
V A IE+ SR E+++K R+ F TA + +++PVPS + G+
Sbjct: 301 RVTALIEEAGPSRAEVLLKIRADFSANVTANTIVVQMPVPSYTMRASFELEAGAVGQTTD 360
Query: 338 YAPERDAMVWKVKSFPGGKDYMCRAEFSLPSITXXXXXXXXXXXIRVKFEIPYFTVSGIQ 397
+ + W +K GG ++ RA+ + S + + F IP + S +Q
Sbjct: 361 FKEGSRRIEWNLKKIVGGSEHTLRAKLTF-SQESHGNLTKEAGPVNMNFTIPMYNTSKLQ 419
Query: 398 VRYLKIIEKS-GYQALPWVRYITMAGEYELRL 428
VRYL+I +KS Y WVRY+T A Y RL
Sbjct: 420 VRYLQIAKKSKTYNPYRWVRYVTQANSYVARL 451
>AK062296
Length = 310
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 155/289 (53%), Gaps = 14/289 (4%)
Query: 152 PPMAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMP 211
P AVT +V G + K+ E+F+D++E +++ +S+G I+ S++ G ++M++YL+G P
Sbjct: 24 PGTAVTKSVVATEPGGK-KREEIFVDIIERISVTFSSSGYILTSEIDGTIQMKSYLTGNP 82
Query: 212 ECKLGLNDRVLLEAQGRATK-------GKAIDLDDIKFHQCVRLARFENDRTISFIPPDG 264
E +L LN+ + + G ++ G A+ LDD FH+ V L F+ DRT+ IPPDG
Sbjct: 83 EIRLALNEDLSIGRTGSSSYDYRSSSGGGAVILDDCNFHESVHLDSFDIDRTLHLIPPDG 142
Query: 265 SFDLMTYRLSTQVKPLIWVEAQIEKHSRSRIELMVKARSQFKERSTATNVEIEVPVPSDA 324
F +M YR++ + KP V A IE+ SR E+++K R+ F TA + +++PVPS
Sbjct: 143 EFAVMNYRITQEFKPPFRVTALIEEAGPSRAEVLLKIRADFSANVTANTIVVQMPVPSYT 202
Query: 325 TNPNIRTSMGSAA----YAPERDAMVWKVKSFPGGKDYMCRAEFSLPSITXXXXXXXXXX 380
+ G+ + + W +K GG ++ RA+ + S
Sbjct: 203 MRASFELEAGAVGQTTDFKEGSRRIEWNLKKIVGGSEHTLRAKLTF-SQESHGNLTKEAG 261
Query: 381 XIRVKFEIPYFTVSGIQVRYLKIIEKS-GYQALPWVRYITMAGEYELRL 428
+ + F IP + S +QVRYL+I +KS Y WVRY+T A Y RL
Sbjct: 262 PVNMNFTIPMYNTSKLQVRYLQIAKKSKTYNPYRWVRYVTQANSYVARL 310
>Os05g0383100 Clathrin adaptor complex, medium chain family protein
Length = 417
Score = 155 bits (393), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 102/382 (26%), Positives = 180/382 (47%), Gaps = 38/382 (9%)
Query: 61 YMF-IQHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRDNFVVVYELLD 119
Y+F + N V L ++ + FL RV DV Y +L E+ ++DNFV+VY++LD
Sbjct: 58 YLFQVYRNGVTFLACTQVEMPPLLAIEFLSRVADVLTDYLGDLNEDIIKDNFVLVYQILD 117
Query: 120 EMMDFGYPQYTEAKILSEFIK-----------TDAYRMEVSQRPPMAVTNAVSWRSEGIR 168
EMMD G+P TE IL E I + + P A + V WR+ ++
Sbjct: 118 EMMDNGFPLTTEPNILKEMIAPPNIVSKMLNVVTGKSSNLGNKLPDAAASFVPWRTTVVK 177
Query: 169 YKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGR 228
NEV++++VE ++ VN G +V+ + G +++ + L G+PE L ++ +
Sbjct: 178 DASNEVYVNIVEELDACVNREGALVKCEAYGKIQVNSSLPGVPELTLSFSNPTI------ 231
Query: 229 ATKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIE 288
++D++FH CVR +E+++ +SF+PPDG F+LM+YR+ I+V+ Q+
Sbjct: 232 --------INDVRFHPCVRFRPWESNQILSFVPPDGQFELMSYRVKKLKTTPIYVKPQLT 283
Query: 289 KHS-RSRIELMVKARSQFKERSTATNVEIEVPVPSDATNPNIRTSMGSAAYAPERDAMVW 347
S R+ +MV ++ T ++ ++ +P + ++ + G+ ++ W
Sbjct: 284 SDSGNCRVNVMVGIKND--PGKTIDSITVQFRLPPLIASADLTANYGTVDILADQTCF-W 340
Query: 348 KVKSFPGGKDYMCRAEFSLPSITXXXXXXXXXXXIRVKFEIPYFTVSGIQVRYLKI--IE 405
+ P K L VKF+I +SG+Q+ L++
Sbjct: 341 TIGQIPKDKAPSLSGNLRL---EEGLTHLHTFPTFEVKFKIMGVALSGLQIDKLEVKNTP 397
Query: 406 KSGYQALPWVRYITMAGEYELR 427
+ Y+ R T AG YE+R
Sbjct: 398 NAPYKGF---RAQTQAGRYEVR 416
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.136 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,193,601
Number of extensions: 503543
Number of successful extensions: 1135
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1121
Number of HSP's successfully gapped: 6
Length of query: 429
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 325
Effective length of database: 11,605,545
Effective search space: 3771802125
Effective search space used: 3771802125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)