BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0702900 Os01g0702900|AK071158
(129 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0702900 Similar to Sucrose-phosphate synthase (EC 2.4.... 223 4e-59
Os04g0588300 159 4e-40
Os02g0227400 Poly(A) polymerase, central region domain cont... 132 7e-32
Os06g0558700 Similar to Poly(A) polymerase 130 2e-31
AK103720 130 2e-31
Os02g0771500 Similar to Pap1p 122 5e-29
Os06g0319600 Poly(A) polymerase, central region domain cont... 114 1e-26
Os07g0688500 Poly(A) polymerase, central region domain cont... 77 3e-15
Os03g0313200 PAP/25A core domain containing protein 67 4e-12
>Os01g0702900 Similar to Sucrose-phosphate synthase (EC 2.4.1.14)
Length = 129
Score = 223 bits (567), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 108/108 (100%), Positives = 108/108 (100%)
Query: 1 MRFRGVQVDLVYAGVCLPWCPTTWSGPQCDRSVLRGLDDLATARSLNGIRVADEILRLVP 60
MRFRGVQVDLVYAGVCLPWCPTTWSGPQCDRSVLRGLDDLATARSLNGIRVADEILRLVP
Sbjct: 1 MRFRGVQVDLVYAGVCLPWCPTTWSGPQCDRSVLRGLDDLATARSLNGIRVADEILRLVP 60
Query: 61 ETAVFRTMLRCVKHWAKARGVYSNVAGFLGGIGWAILVARMCQLYPNT 108
ETAVFRTMLRCVKHWAKARGVYSNVAGFLGGIGWAILVARMCQLYPNT
Sbjct: 61 ETAVFRTMLRCVKHWAKARGVYSNVAGFLGGIGWAILVARMCQLYPNT 108
>Os04g0588300
Length = 556
Score = 159 bits (403), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 84/107 (78%), Positives = 88/107 (82%), Gaps = 3/107 (2%)
Query: 1 MRFRGVQVDLVYAGVCLPWCPTTWSGPQCDRSVLRGLDDLATARSLNGIRVADEILRLVP 60
MRF GVQVDLVYAGVCLP P RSVLRGLD LATARSLNG+RVADEILRLVP
Sbjct: 149 MRFHGVQVDLVYAGVCLPVVPGDLD--LSGRSVLRGLD-LATARSLNGVRVADEILRLVP 205
Query: 61 ETAVFRTMLRCVKHWAKARGVYSNVAGFLGGIGWAILVARMCQLYPN 107
+ FRT LRCVKHWAKARGVYSNVAGFLGG+GWAILVA +C LYPN
Sbjct: 206 DATAFRTTLRCVKHWAKARGVYSNVAGFLGGVGWAILVACVCLLYPN 252
>Os02g0227400 Poly(A) polymerase, central region domain containing protein
Length = 602
Score = 132 bits (332), Expect = 7e-32, Method: Composition-based stats.
Identities = 64/106 (60%), Positives = 79/106 (74%), Gaps = 3/106 (2%)
Query: 2 RFRGVQVDLVYAGVCLPWCPTTWSGPQCDRSVLRGLDDLATARSLNGIRVADEILRLVPE 61
+FRG+ +DL+YA V LP P + Q SVL +D+ AT RSLNG RVAD+ILRLVP
Sbjct: 156 KFRGLPIDLLYASVSLPVIPPDFDISQ--GSVLCDVDE-ATVRSLNGCRVADQILRLVPN 212
Query: 62 TAVFRTMLRCVKHWAKARGVYSNVAGFLGGIGWAILVARMCQLYPN 107
+FR LRC+K+WA+ RGVYSNV G LGG+ WA+LVAR+CQLYPN
Sbjct: 213 AEIFRKTLRCLKYWAQRRGVYSNVTGLLGGVSWALLVARVCQLYPN 258
>Os06g0558700 Similar to Poly(A) polymerase
Length = 708
Score = 130 bits (328), Expect = 2e-31, Method: Composition-based stats.
Identities = 64/106 (60%), Positives = 77/106 (72%), Gaps = 3/106 (2%)
Query: 2 RFRGVQVDLVYAGVCLPWCPTTWSGPQCDRSVLRGLDDLATARSLNGIRVADEILRLVPE 61
+F G+ +DL+YA V L P Q SVL +D++ T RSLNG RVAD+ILRLVP
Sbjct: 161 KFHGISIDLLYASVSLLVVPPDLDISQ--GSVLYDVDEV-TVRSLNGCRVADQILRLVPN 217
Query: 62 TAVFRTMLRCVKHWAKARGVYSNVAGFLGGIGWAILVARMCQLYPN 107
FRT LRC+K+WAK RGVYSNV GFLGG+ WA+LVAR+CQLYPN
Sbjct: 218 VENFRTTLRCLKYWAKKRGVYSNVTGFLGGVNWALLVARVCQLYPN 263
>AK103720
Length = 898
Score = 130 bits (328), Expect = 2e-31, Method: Composition-based stats.
Identities = 64/106 (60%), Positives = 77/106 (72%), Gaps = 3/106 (2%)
Query: 2 RFRGVQVDLVYAGVCLPWCPTTWSGPQCDRSVLRGLDDLATARSLNGIRVADEILRLVPE 61
+F G+ +DL+YA V L P Q SVL +D++ T RSLNG RVAD+ILRLVP
Sbjct: 161 KFHGISIDLLYASVSLLVVPPDLDISQ--GSVLYDVDEV-TVRSLNGCRVADQILRLVPN 217
Query: 62 TAVFRTMLRCVKHWAKARGVYSNVAGFLGGIGWAILVARMCQLYPN 107
FRT LRC+K+WAK RGVYSNV GFLGG+ WA+LVAR+CQLYPN
Sbjct: 218 VENFRTTLRCLKYWAKKRGVYSNVTGFLGGVNWALLVARVCQLYPN 263
>Os02g0771500 Similar to Pap1p
Length = 91
Score = 122 bits (307), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 58/62 (93%), Positives = 61/62 (98%)
Query: 47 NGIRVADEILRLVPETAVFRTMLRCVKHWAKARGVYSNVAGFLGGIGWAILVARMCQLYP 106
+GIRVADEILRLVP+TA FRTMLRCVKHWAKARGVYSNVAGFLGGIGWAILVAR+CQLYP
Sbjct: 9 HGIRVADEILRLVPDTAAFRTMLRCVKHWAKARGVYSNVAGFLGGIGWAILVARVCQLYP 68
Query: 107 NT 108
NT
Sbjct: 69 NT 70
>Os06g0319600 Poly(A) polymerase, central region domain containing protein
Length = 769
Score = 114 bits (286), Expect = 1e-26, Method: Composition-based stats.
Identities = 58/106 (54%), Positives = 70/106 (66%), Gaps = 3/106 (2%)
Query: 2 RFRGVQVDLVYAGVCLPWCPTTWSGPQCDRSVLRGLDDLATARSLNGIRVADEILRLVPE 61
+ GV +DL+YA + P S+L +D+ T RSLNG RV D+ILRLVP
Sbjct: 173 KLNGVSIDLLYANLTHVVIPEDLDLSH--DSILHNVDE-QTVRSLNGCRVTDKILRLVPN 229
Query: 62 TAVFRTMLRCVKHWAKARGVYSNVAGFLGGIGWAILVARMCQLYPN 107
FRT LR ++ WAK RGVYSNV GFLGGI WA+LVAR+CQLYPN
Sbjct: 230 ILTFRTTLRFMRFWAKRRGVYSNVIGFLGGINWALLVARICQLYPN 275
>Os07g0688500 Poly(A) polymerase, central region domain containing protein
Length = 447
Score = 77.0 bits (188), Expect = 3e-15, Method: Composition-based stats.
Identities = 36/74 (48%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Query: 33 VLRGLDDLATARSLNGIRVADEILRLVPETAVFRTMLRCVKHWAKARGVYSNVAGFLGGI 92
+L+ LD L + RSL+G+RV ++I++LVP F+ +LRC+K WAK RG++ ++ GF GI
Sbjct: 185 LLQKLDSL-SWRSLSGVRVNEQIVQLVPNAQKFQILLRCIKLWAKRRGIHCHLLGFFAGI 243
Query: 93 GWAILVARMCQLYP 106
AIL A +CQ YP
Sbjct: 244 HLAILAAYVCQRYP 257
>Os03g0313200 PAP/25A core domain containing protein
Length = 431
Score = 66.6 bits (161), Expect = 4e-12, Method: Composition-based stats.
Identities = 37/106 (34%), Positives = 63/106 (59%), Gaps = 3/106 (2%)
Query: 2 RFRGVQVDLVYAGVCLPWCPTTWSGPQCDRSVLRGLDDLATARSLNGIRVADEILRLVPE 61
+F G+ VD Y V LP + D +L +++ + R L+G+RV +I++L+P
Sbjct: 86 KFNGMLVDFPY--VQLPVINAAEAIHAFDPRLLAAVNE-PSWRCLSGVRVNRQIMQLLPN 142
Query: 62 TAVFRTMLRCVKHWAKARGVYSNVAGFLGGIGWAILVARMCQLYPN 107
F+ +LRC+K WA+ RG++ ++ GF GI AIL A +C ++P+
Sbjct: 143 IKKFQILLRCLKLWARKRGLHCHLLGFFAGIHLAILAAFVCIMHPH 188
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.141 0.478
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,648,489
Number of extensions: 121754
Number of successful extensions: 353
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 349
Number of HSP's successfully gapped: 9
Length of query: 129
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 40
Effective length of database: 12,388,755
Effective search space: 495550200
Effective search space used: 495550200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 150 (62.4 bits)