BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0687800 Os01g0687800|Os01g0687800
(592 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0687800 Plant-specific FAD-dependent oxidoreductase fa... 975 0.0
Os03g0563100 Plant-specific FAD-dependent oxidoreductase fa... 439 e-123
Os02g0124600 Plant-specific FAD-dependent oxidoreductase fa... 419 e-117
Os08g0114300 Plant-specific FAD-dependent oxidoreductase fa... 374 e-103
Os04g0361500 Plant-specific FAD-dependent oxidoreductase fa... 326 2e-89
Os02g0124400 Conserved hypothetical protein 258 7e-69
Os08g0519100 Plant-specific FAD-dependent oxidoreductase fa... 146 4e-35
>Os01g0687800 Plant-specific FAD-dependent oxidoreductase family protein
Length = 592
Score = 975 bits (2520), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/551 (88%), Positives = 486/551 (88%)
Query: 42 CVLSNAYGAWSSDRADCPVSAVAYPXXXXXXXXXXXXXXXKNMPVKVVSGFAHTIPKLAC 101
CVLSNAYGAWSSDRADCPVSAVAYP KNMPVKVVSGFAHTIPKLAC
Sbjct: 42 CVLSNAYGAWSSDRADCPVSAVAYPASEADVVAVVADASAKNMPVKVVSGFAHTIPKLAC 101
Query: 102 PGNXXXXXXXXXXISTARYXXXXXXXXXXXXXXXXXXPLRAVIDAAEASGLSLTAAPYWE 161
PGN ISTARY PLRAVIDAAEASGLSLTAAPYWE
Sbjct: 102 PGNGSSGAASSLLISTARYDGVAVDAAARTVTADAGAPLRAVIDAAEASGLSLTAAPYWE 161
Query: 162 XXXXXXXXXXXXXXXXXXXXXXAVHDHVVALRLVVPAGAADGWAKVVALRRGDALFNAAL 221
AVHDHVVALRLVVPAGAADGWAKVVALRRGDALFNAAL
Sbjct: 162 GVSVGGLVSTGSHGSSWWGRGGAVHDHVVALRLVVPAGAADGWAKVVALRRGDALFNAAL 221
Query: 222 VSLGLLGVISKVTLALEPRFKRSISYEYRDDSTFQDDFARHAANHEFADITWYPSQHKAV 281
VSLGLLGVISKVTLALEPRFKRSISYEYRDDSTFQDDFARHAANHEFADITWYPSQHKAV
Sbjct: 222 VSLGLLGVISKVTLALEPRFKRSISYEYRDDSTFQDDFARHAANHEFADITWYPSQHKAV 281
Query: 282 YRIDDRMPLNATGDGVNDFIGFQSTLIAVSSGIRALETALEASRNVKGKCKMAAAEIAAK 341
YRIDDRMPLNATGDGVNDFIGFQSTLIAVSSGIRALETALEASRNVKGKCKMAAAEIAAK
Sbjct: 282 YRIDDRMPLNATGDGVNDFIGFQSTLIAVSSGIRALETALEASRNVKGKCKMAAAEIAAK 341
Query: 342 RLVGNGLRGAGGRLFTGYPVVGFQGRMQTSGSCARSPPTDTLSACPWDPRYKGLFFYEST 401
RLVGNGLRGAGGRLFTGYPVVGFQGRMQTSGSCARSPPTDTLSACPWDPRYKGLFFYEST
Sbjct: 342 RLVGNGLRGAGGRLFTGYPVVGFQGRMQTSGSCARSPPTDTLSACPWDPRYKGLFFYEST 401
Query: 402 AMFSPAARFRDFVLDVKRLRDVDPDSMCGVDAYNGLLVRFVKASEAYLGQPEDTVVVDFN 461
AMFSPAARFRDFVLDVKRLRDVDPDSMCGVDAYNGLLVRFVKASEAYLGQPEDTVVVDFN
Sbjct: 402 AMFSPAARFRDFVLDVKRLRDVDPDSMCGVDAYNGLLVRFVKASEAYLGQPEDTVVVDFN 461
Query: 462 YYRASDGSSPRLSQDVWEEVEQLAFVKHGARPHWAKNRLAAFRGVRGKYPSWDKFGAAKR 521
YYRASDGSSPRLSQDVWEEVEQLAFVKHGARPHWAKNRLAAFRGVRGKYPSWDKFGAAKR
Sbjct: 462 YYRASDGSSPRLSQDVWEEVEQLAFVKHGARPHWAKNRLAAFRGVRGKYPSWDKFGAAKR 521
Query: 522 QLDPRGLFDSRWSDEVVGGEEQLPKADGCALEGRCVCSEDRHCSPSKGYYCRPGLVYSEA 581
QLDPRGLFDSRWSDEVVGGEEQLPKADGCALEGRCVCSEDRHCSPSKGYYCRPGLVYSEA
Sbjct: 522 QLDPRGLFDSRWSDEVVGGEEQLPKADGCALEGRCVCSEDRHCSPSKGYYCRPGLVYSEA 581
Query: 582 RVCRYSVSQLV 592
RVCRYSVSQLV
Sbjct: 582 RVCRYSVSQLV 592
>Os03g0563100 Plant-specific FAD-dependent oxidoreductase family protein
Length = 604
Score = 439 bits (1130), Expect = e-123, Method: Compositional matrix adjust.
Identities = 240/553 (43%), Positives = 312/553 (56%), Gaps = 14/553 (2%)
Query: 42 CVLSNAYGAWSSDRADCPVSAVAYPXXXXXXXXXXXXXXXKNMPVKVVSGFAHTIPKLAC 101
C +S+AYG + DR+ C +A YP +KV + ++H+IP+LAC
Sbjct: 53 CTVSSAYGVFP-DRSTCRAAAAVYPSTEEELVRAVANATASGTKMKVATRYSHSIPQLAC 111
Query: 102 PGNXXXXXXXXXXISTARYXXXXXX-XXXXXXXXXXXXPLRAVIDAAEASGLSLTAAPYW 160
PG+ IST R LR +I A +G++L APYW
Sbjct: 112 PGDGDGEGLV---ISTRRLNRVVAVDAGRMEVTVESGISLRELIAEAGKAGMALPYAPYW 168
Query: 161 EXXXXXXXXXXXXXXXXXXXXXXAVHDHVVALRLVVPAGAADGWAKVVALRRGDALFNAA 220
AVH++VV +R+V PA AADG+AKV L D +AA
Sbjct: 169 WGLTVGGMLGTGAHGSSLWGKGSAVHEYVVGMRIVTPAPAADGYAKVRVLTAADPELDAA 228
Query: 221 LVSLGLLGVISKVTLALEPRFKRSISYEYRDDSTFQDDFARHAANHEFADITWYPSQHKA 280
VSLG+LGVIS+VTLAL+P FKRS+++ RDD D + HEFADI WYP +A
Sbjct: 229 KVSLGVLGVISQVTLALQPLFKRSVTFMERDDDDLADQVTKFGYQHEFADIAWYPGIGRA 288
Query: 281 VYRIDDRMPLNATGDGVNDFIGFQSTLIAVSSGIRALETALEASRNVKGKCKMAAAEIAA 340
VYR+DDR+P+NA+G+GV DFIGF++T + R E E + N GKC + AA
Sbjct: 289 VYRVDDRLPMNASGEGVLDFIGFRATPRLLIRTNRLAEELFERAGNGNGKCVTSRVTHAA 348
Query: 341 KRLVGNGLRGAGGRLFTGYPVVGFQGRMQTSGSCARSPPTDTLSACPWDPRYKGLFFYES 400
G GL G LFTGYPVVG Q MQ SG C P L+ACPWDPR +G F+
Sbjct: 349 LSSAGYGLMRRSGGLFTGYPVVGPQHLMQASGGCITGPEDALLTACPWDPRVRGSSFFHQ 408
Query: 401 TAMFSPAARFRDFVLDVKRLRDVDPDSMCGVDAYNGLLVRFVKASEAYLGQP-------E 453
T P +R FV +V+RLRD++P ++CGV+ Y+G+L+R+VKAS A+LG+P +
Sbjct: 409 TTFSLPVSRAGAFVEEVRRLRDMNPKALCGVELYDGILIRYVKASTAHLGKPAAGGGQSD 468
Query: 454 DTVVVDFNYYRASDGSSPRLSQDVWEEVEQLAFVKHGARPHWAKNRLAAFRGVRGKYPSW 513
D V D YYR+ D + RL +DV EE+EQ+ K+G PHW KNR AF G KYP
Sbjct: 469 DMVDFDMTYYRSRDPNRARLFEDVLEEIEQMGVFKYGGLPHWGKNRNLAFVGAARKYPRI 528
Query: 514 DKFGAAKRQLDPRGLFDSRWSDEVVGGEEQLPKAD--GCALEGRCVCSEDRHCSPSKGYY 571
+F K DP GLF S WSD ++G + P D GCALEG CVCS+D HC+P +GY
Sbjct: 529 GEFLRIKDAYDPDGLFSSDWSDMMLGIGGRAPTRDAPGCALEGMCVCSQDAHCAPEQGYV 588
Query: 572 CRPGLVYSEARVC 584
CRPG VY +ARVC
Sbjct: 589 CRPGKVYKDARVC 601
>Os02g0124600 Plant-specific FAD-dependent oxidoreductase family protein
Length = 599
Score = 419 bits (1076), Expect = e-117, Method: Compositional matrix adjust.
Identities = 241/553 (43%), Positives = 315/553 (56%), Gaps = 14/553 (2%)
Query: 42 CVLSNAYGAWSSDRADCPVSAVAYPXXXXXXXXXXXXXXXKNMPVKVVSGFAHTIPKLAC 101
C ++NAY A+ DR+ C +A AYP +K + + H++PKL+C
Sbjct: 46 CTVTNAYAAFP-DRSTCRAAAAAYPASEEELLRVVAAAAASGTKMKAATRYGHSVPKLSC 104
Query: 102 PGNXXXXXXXXXXISTARYXXXXXXXXXXXXXXXXXXPLRAVIDAAEASGLSLTAAPYWE 161
PG + R L +IDAA +GL+L +PYW
Sbjct: 105 PGAGDGRGLAISTSALNRVVAVDAAGMAITVESGVT--LAELIDAAAGAGLALPHSPYWL 162
Query: 162 XXXXXXXXXXXXXXXXXXXXXXAVHDHVVALRLVVPAGAADGWAKVVALRRGDALFNAAL 221
AVH++V +R+V PA A +G+AKV L GD +AA
Sbjct: 163 GVTVGGLLSTGAHGSSVWGNGSAVHEYVNGMRIVTPAPAREGYAKVRVLAAGDPELDAAK 222
Query: 222 VSLGLLGVISKVTLALEPRFKRSISYEYRDDSTFQDDFARHAANHEFADITWYPSQHKAV 281
VSLG+LGVIS+VTL L+P FKRS+++++ D + A HEFADI WYP KAV
Sbjct: 223 VSLGVLGVISQVTLKLQPMFKRSVAFQHCGDGDLAERVVAFAGEHEFADILWYPGHGKAV 282
Query: 282 YRIDDRMPLNATGDGVNDFIGFQSTLIAVSSGIRALETALEASRNVKGKCKMAAA--EIA 339
YRIDDR+P N GDGV DF+GF++T R +E LEA+ N GKC A+ I
Sbjct: 283 YRIDDRVPSNTPGDGVYDFVGFRATPTLAIQAKRLVEDGLEATGNAAGKCLAASTTNSIL 342
Query: 340 AKRLVGNGLRGAGGRLFTGYPVVGFQGRMQTSGSCARSPPTDTLSACPWDPRYK-GLFFY 398
A R G G F G VVG+Q R+Q+SGSC L+ACPWDPR + G FF+
Sbjct: 343 AARNYGLTRNGQLLGAFPGTAVVGYQNRIQSSGSCLAGADDGLLTACPWDPRVEHGTFFF 402
Query: 399 ESTAMFSPAARFRDFVLDVKRLRDVDPDSMCGVDAYNGLLVRFVKASEAYLGQPEDTVVV 458
+S + P +R F+ DV+RLRD++PD++CGV+ Y+G+L+R+V+AS A+LG+PED+V
Sbjct: 403 QS-GISVPLSRAAAFIRDVQRLRDLNPDALCGVELYDGVLMRYVRASAAHLGKPEDSVDF 461
Query: 459 DFNYYRASDGSSPRLSQDVWEEVEQLAFVKHGARPHWAKNRLAAFRGVRGKYPSWD--KF 516
D YYR+ D ++P L +DV EEVEQ+A K+G PHW KN+ AAF G KY F
Sbjct: 462 DLTYYRSRDPATPLLHEDVVEEVEQMALRKYGGVPHWGKNQNAAFEGAAAKYGGARAAAF 521
Query: 517 GAAKRQLDPRGLFDSRWSDEVVG----GEEQLPKADGCALEGRCVCSEDRHCSPSKGYYC 572
KR DP GLF S WSD+V+G G + + DGCALEG CVCSED HCSP KGY C
Sbjct: 522 MRVKRAYDPEGLFSSEWSDKVLGVAGAGGVSVVR-DGCALEGLCVCSEDAHCSPEKGYLC 580
Query: 573 RPGLVYSEARVCR 585
RPG VY EARVCR
Sbjct: 581 RPGRVYKEARVCR 593
>Os08g0114300 Plant-specific FAD-dependent oxidoreductase family protein
Length = 589
Score = 374 bits (959), Expect = e-103, Method: Compositional matrix adjust.
Identities = 226/549 (41%), Positives = 301/549 (54%), Gaps = 18/549 (3%)
Query: 42 CVLSNAYGAWSSDRADCPVSAVAYPXXXXXXXXXXXXXXXKNMPVKVVSGFAHTIPKLAC 101
C ++N YG++ DR C + ++P K + +H+ PKLAC
Sbjct: 36 CTVTNVYGSFP-DRTICRAADASFPRTEAELVAAVAAAAAAGRKAKAATRHSHSFPKLAC 94
Query: 102 PGNXXXXXXXXXXISTARYXXXXXXXXXXX--XXXXXXXPLRAVIDAAEASGLSLTAAPY 159
PG I + R+ LR +I AA A+GL+L +PY
Sbjct: 95 PGG------RDGTIISTRFLNRTVAVDAAARRITVESGVVLRDLIRAAAAAGLALPHSPY 148
Query: 160 WEXXXXXXXXXXXXXXXXXXXXXXAVHDHVVALRLVVPAGAADGWAKVVALRRGDALFNA 219
W AVH++VV LR+V PA A+ G+A V L GD +A
Sbjct: 149 WYGLTVGGLLATGAHGSSLWGKGSAVHEYVVGLRIVTPAPASQGFAVVRELVAGDPDLDA 208
Query: 220 ALVSLGLLGVISKVTLALEPRFKRSISYEYRDDSTFQDDFARHAANHEFADITWYPSQHK 279
A VSLG+LGVIS+VT L+P+FKRS+ + RDDS F + A HEF D+ W P Q K
Sbjct: 209 AKVSLGVLGVISQVTFELQPQFKRSVRFVTRDDSDFAEKVAVWGGAHEFGDMAWLPRQGK 268
Query: 280 AVYRIDDRMPLNATGDGVNDFIGF--QSTLIAVSSGIRALETALEASRNVKGKCKMAAAE 337
+YR DDR+ + G+G+ND++GF Q TL +++ RA E LE + +C A
Sbjct: 269 VIYREDDRVDVATPGNGLNDYLGFRAQPTLGLITA--RAAEERLERNGTDIARCLAARLP 326
Query: 338 IAAKRLVGNGLRGAGGRLFTGYPVVGFQGRMQTSGSCARSPPTDTLSACPWDPRYKGLFF 397
+ L G G FTG+PVVGFQ R+Q SG+C SP LS+C WDPR +G F
Sbjct: 327 PSLFELQAYGFTN-DGVFFTGWPVVGFQHRIQASGTCISSPEDGLLSSCTWDPRIRGPFL 385
Query: 398 YESTAMFSPA-ARFRDFVLDVKRLRDVDPDSMCGVDAYNGLLVRFVKASEAYLGQPEDTV 456
Y S FS A R FV D+ RLRD++P + C +DA G+L+R+VKAS AYLG+PED V
Sbjct: 386 YNSG--FSIALPRAAAFVADMMRLRDLNPRAFCDIDAKLGILMRYVKASSAYLGKPEDCV 443
Query: 457 VVDFNYYRASDGSSPRLSQDVWEEVEQLAFVKHGARPHWAKNRLAAFRGVRGKYPSWDKF 516
D YYR+ D PR DV++E+EQ+A K+GA PHW KNR AF G KYP+ +F
Sbjct: 444 DFDVTYYRSYDDGEPRPHSDVFDELEQMALRKYGAVPHWGKNRNFAFDGAAAKYPNSGEF 503
Query: 517 GAAKRQLDPRGLFDSRWSDEVVGGEEQLPKADG-CALEGRCVCSEDRHCSPSKGYYCRPG 575
K + DP G+F S WSD+V+G D CA+EG CVCS+D HC+P GY+CRPG
Sbjct: 504 IKVKERYDPDGIFSSEWSDQVLGISGSPNIVDKRCAIEGLCVCSDDSHCAPELGYFCRPG 563
Query: 576 LVYSEARVC 584
++ EARVC
Sbjct: 564 KLFKEARVC 572
>Os04g0361500 Plant-specific FAD-dependent oxidoreductase family protein
Length = 590
Score = 326 bits (836), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 206/547 (37%), Positives = 277/547 (50%), Gaps = 31/547 (5%)
Query: 42 CVLSNAYGAWSSDRADCPVSAVAYPXXXXXXXXXXXXXXXKNMPVKVVSGFAHTIPKLAC 101
C L+N YG++S DRA C + V YP VKV + ++++ P+LAC
Sbjct: 48 CTLTNIYGSFS-DRAICRAANVTYPRTEEELVAAVAAAVAAGRKVKVATRYSNSFPRLAC 106
Query: 102 PGNXXXXXXXXXXISTARYXXXXXXXXXXXXXXXXXXPLRAVIDAAEASGLSLTAAPYWE 161
PG + A +R +I A A+GL+L +PYW
Sbjct: 107 PGGEDGTVISTRWLDRA----VRVDAARRLMTVESGMVMRDLIREAAAAGLALPHSPYWS 162
Query: 162 XXXXXXXXXXXXXXXXXXXXXXAVHDHVVALRLVVPAGAADGWAKVVALRRGDALFNAAL 221
AVH++VV +R+V PA A++G+A V L GD +AA
Sbjct: 163 GLTIGGVLATGAHGSSLWGKGSAVHEYVVGMRIVTPAPASEGFAAVRELAAGDPDLDAAK 222
Query: 222 VSLGLLGVISKVTLALEPRFKRSISYEYRDDSTFQDDFARHAANHEFADITWYPSQHKAV 281
VSLG+LG IS+VTL L+P FKRS+++ R+DS D A HEF D+ W P + AV
Sbjct: 223 VSLGVLGAISQVTLELQPLFKRSVAFVTRNDSDVADTVAAWGRLHEFGDVAWLPRRRVAV 282
Query: 282 YRIDDRMPLNATGDGVNDFIGFQSTLIAVSSGIRALETALEA-SRNVKGKCKMAAAEIAA 340
YR DDR+ + GDG +D+ F+ T R E LE S + +C + A
Sbjct: 283 YREDDRVDVATPGDGRSDYPAFRPTPTLPLVASRLAEEWLEERSGSDAARCAASRVMPAT 342
Query: 341 KRLVGNGLRGAGGRLFTGYPVVGFQGRMQTSGSCARSPPTDTLSACPWDPRYKGLFFYES 400
+ GL G G SG+ R G FY S
Sbjct: 343 LEHLNYGLTNDGEAFTG---TTGTSPPTTASGTALR-----------------GHLFYNS 382
Query: 401 TAMFSPA-ARFRDFVLDVKRLRDVDPDSMCGVDAYNGLLVRFVKASEAYLGQPEDTVVVD 459
FS A +R FV DV R+RD++P + C +D+ GLL+R+V AS AYLG+ ED+V D
Sbjct: 383 G--FSIALSRAPAFVADVARIRDLNPAAFCQIDSKMGLLMRYVAASSAYLGKAEDSVDFD 440
Query: 460 FNYYRASDGSSPRLSQDVWEEVEQLAFVKHGARPHWAKNRLAAFRGVRGKYPSWDKFGAA 519
YYR+ +PR DV++EVEQ+A KHG PHW KNR AF G +YP+ KF
Sbjct: 441 VTYYRSYARGAPRAHADVFDEVEQMALRKHGGVPHWGKNRNYAFDGAIARYPNAGKFMRV 500
Query: 520 KRQLDPRGLFDSRWSDEV--VGGEEQLPKADGCALEGRCVCSEDRHCSPSKGYYCRPGLV 577
K + DP G+F S WSD+V VGG + DGCA+EG CVCS+D HC+P KGY+CRPG V
Sbjct: 501 KDRFDPDGVFSSEWSDQVLGVGGASPVIVGDGCAMEGLCVCSDDSHCAPEKGYFCRPGKV 560
Query: 578 YSEARVC 584
++ ARVC
Sbjct: 561 FTAARVC 567
>Os02g0124400 Conserved hypothetical protein
Length = 290
Score = 258 bits (660), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 137/277 (49%), Positives = 177/277 (63%), Gaps = 8/277 (2%)
Query: 315 RALETALEASRNVKGKCKMAAAEIAAKRLVGNGLRGAGGRLFT--GYPVVGFQGRMQTSG 372
R E ALEA+ N GKC +A IA + GN G L G VVG+Q R+Q+SG
Sbjct: 10 RIGEDALEATANSAGKCLAGSATIA-RLAAGNYGVTRRGVLPPPPGAAVVGYQNRIQSSG 68
Query: 373 SCARSPPTDTLSACPWDPRYKGLFFYESTAMFSPAARFRDFVLDVKRLRDVDPDSMCGVD 432
SC L+AC WDPR + F+ + + P + F+ DV+RLRD++PD++CG++
Sbjct: 69 SCLSGADDGLLTACTWDPRVRHNSFFFQSGISVPLSGAAAFIRDVQRLRDLNPDALCGLE 128
Query: 433 AYNGLLVRFVKASEAYLGQPEDTVVVDFNYYRASDGSSPRLSQDVWEEVEQLAFVKHGAR 492
Y G+L+R+V+AS A+LG+PED+V +D YYR+ D ++PRL +D EE+EQ+A K+G
Sbjct: 129 VYYGVLLRYVRASTAHLGKPEDSVELDLTYYRSRDPAAPRLHEDAVEEIEQMALRKYGGV 188
Query: 493 PHWAKNRLAAFRGVRGKYPSWDKFGAAKRQLDPRGLFDSRWSDEVVG----GEEQLPKAD 548
PHW KNR AAF G KYP +F K DP GLF S WSD+V+G G + + D
Sbjct: 189 PHWGKNRNAAFDGAIAKYPKSGEFLKVKGSYDPEGLFSSEWSDKVLGVAGAGGVSVVR-D 247
Query: 549 GCALEGRCVCSEDRHCSPSKGYYCRPGLVYSEARVCR 585
GCALEG CVCSED HCSP KGY CRPG VY EARVCR
Sbjct: 248 GCALEGLCVCSEDAHCSPEKGYLCRPGRVYKEARVCR 284
>Os08g0519100 Plant-specific FAD-dependent oxidoreductase family protein
Length = 450
Score = 146 bits (368), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 122/253 (48%), Gaps = 8/253 (3%)
Query: 42 CVLSNAYGAWSSDRADCPVSAVAYPXXXXXXXXXXXXXXXKNMPVKVVSGFAHTIPKLAC 101
C ++NA+GA+ D + C V+A A+P +KV + H KL+C
Sbjct: 42 CTVTNAFGAFP-DGSTCHVAAAAFPATEEELVRVVAGAAASGTKMKVATRLGHNFMKLSC 100
Query: 102 PGNXXXXXXXXXXIST-ARYXXXXXXXXXXXXXXXXXXPLRAVIDAAEASGLSLTAAPYW 160
PG IST A L +IDAA +GL+L APYW
Sbjct: 101 PGGDGLV------ISTNALNRVVGVNAARMEITVESGVTLSELIDAAAHAGLALPHAPYW 154
Query: 161 EXXXXXXXXXXXXXXXXXXXXXXAVHDHVVALRLVVPAGAADGWAKVVALRRGDALFNAA 220
AVH++V +R+V PA A++G+AKV + GD +A
Sbjct: 155 LDLTVGGLLSTGAHGSSVSGKGGAVHEYVTGMRVVTPAPASEGYAKVRVVNAGDPDLDAV 214
Query: 221 LVSLGLLGVISKVTLALEPRFKRSISYEYRDDSTFQDDFARHAANHEFADITWYPSQHKA 280
VSLG+LGVIS+VTLAL+P F RS+S+ R D + A HEF D+ WYP++ +A
Sbjct: 215 KVSLGVLGVISQVTLALQPLFNRSVSFRRRGDGDLAERAVAFAGEHEFGDVVWYPARGEA 274
Query: 281 VYRIDDRMPLNAT 293
V+RIDDR+ T
Sbjct: 275 VFRIDDRVATTKT 287
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 89/173 (51%), Gaps = 23/173 (13%)
Query: 364 FQGRMQTSGSCARSPPTDTLSACPWDPRYKGLFFYESTAMFSPAARFRDFVLDVKRLRDV 423
FQ +Q+S S + D L P G+ P +R F+ D +RL D+
Sbjct: 295 FQNVIQSSRSTEQQQHGDVL------PFQAGISV--------PLSRASAFIRDAQRLLDM 340
Query: 424 DPDSMCGVDAYNGLLVRFVKASEAYLGQPEDTVVVDFNYYRA-SDGSSPRLSQDVWEEVE 482
+P ++CG + G+L+R+VKAS AYLG+ ED+V D R D + P EE+E
Sbjct: 341 NPGALCGGE-NGGILIRYVKASTAYLGKTEDSVEFDTTSCRHDGDAAMP-------EEME 392
Query: 483 QLAFVKHGARPHWAKNRLAAFRGVRGKYPSWDKFGAAKRQLDPRGLFDSRWSD 535
Q+A K+G PHW KNR AF G K+P +F K DP GLF S WSD
Sbjct: 393 QMALRKYGGVPHWGKNRNVAFDGAIAKFPKAGEFMKVKDAYDPDGLFSSEWSD 445
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.135 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,453,764
Number of extensions: 722458
Number of successful extensions: 1598
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1577
Number of HSP's successfully gapped: 8
Length of query: 592
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 486
Effective length of database: 11,501,117
Effective search space: 5589542862
Effective search space used: 5589542862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 159 (65.9 bits)