BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0680200 Os01g0680200|AK121881
(387 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0680200 Protein of unknown function DUF6, transmembran... 535 e-152
Os05g0556800 Protein of unknown function DUF250 domain cont... 279 2e-75
Os01g0504100 Protein of unknown function DUF6, transmembran... 209 2e-54
Os09g0467400 Protein of unknown function DUF6, transmembran... 122 4e-28
Os09g0467300 Protein of unknown function DUF6, transmembran... 117 2e-26
Os09g0467500 Protein of unknown function DUF6, transmembran... 100 2e-21
Os09g0548600 72 8e-13
>Os01g0680200 Protein of unknown function DUF6, transmembrane domain containing
protein
Length = 387
Score = 535 bits (1379), Expect = e-152, Method: Compositional matrix adjust.
Identities = 280/387 (72%), Positives = 280/387 (72%)
Query: 1 MSITTTSSAPEQLLDMPPSSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYYFA 60
MSITTTSSAPEQLLDMPPSSV RYYFA
Sbjct: 1 MSITTTSSAPEQLLDMPPSSVAANGARAARRRRRLLLFANYAALLGGSVASSLLSRYYFA 60
Query: 61 HGGHNRWVATLVQSVGFPFLLVPVYAGRSPSQPRPFAWFTRRLLAACVVIGVLMGVNNXX 120
HGGHNRWVATLVQSVGFPFLLVPVYAGRSPSQPRPFAWFTRRLLAACVVIGVLMGVNN
Sbjct: 61 HGGHNRWVATLVQSVGFPFLLVPVYAGRSPSQPRPFAWFTRRLLAACVVIGVLMGVNNLL 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXAAIIVRHPLNFSNLNAVVLLTLSSVLIALRSSD 180
AAIIVRHPLNFSNLNAVVLLTLSSVLIALRSSD
Sbjct: 121 FSYSSSYLPVSTSSLLLSTQLAFTLVLAAIIVRHPLNFSNLNAVVLLTLSSVLIALRSSD 180
Query: 181 SGEQPGGGSRARYFVGFAVTLGAAGLFAAYLPVMELVYRKAVSGGFRMAVEVQVIMQXXX 240
SGEQPGGGSRARYFVGFAVTLGAAGLFAAYLPVMELVYRKAVSGGFRMAVEVQVIMQ
Sbjct: 181 SGEQPGGGSRARYFVGFAVTLGAAGLFAAYLPVMELVYRKAVSGGFRMAVEVQVIMQAAA 240
Query: 241 XXXXXXXXXXXXXWKEELARWDLSPXXXXXXXXXXXXXXXXCLMGTAGMVYLTSSLHSGV 300
WKEELARWDLSP CLMGTAGMVYLTSSLHSGV
Sbjct: 241 TALAVAGLAAAGGWKEELARWDLSPAAYWAVLAALVATWQACLMGTAGMVYLTSSLHSGV 300
Query: 301 CMTAVLTANVIGGVVVFRDPFGADKAVATVLCVWGFSSYLYGEYTTQKKVDGDGKVXXXX 360
CMTAVLTANVIGGVVVFRDPFGADKAVATVLCVWGFSSYLYGEYTTQKKVDGDGKV
Sbjct: 301 CMTAVLTANVIGGVVVFRDPFGADKAVATVLCVWGFSSYLYGEYTTQKKVDGDGKVAAAS 360
Query: 361 XXXXXXXXDKIPTGGGAAEGDPVHEAV 387
DKIPTGGGAAEGDPVHEAV
Sbjct: 361 SAAAAASADKIPTGGGAAEGDPVHEAV 387
>Os05g0556800 Protein of unknown function DUF250 domain containing protein
Length = 394
Score = 279 bits (714), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 177/350 (50%), Positives = 199/350 (56%), Gaps = 36/350 (10%)
Query: 56 RYYFAHGGHNRWVATLVQSVGFPFLLVPVYAGRSP-SQPRPFAWFTRRLLAACVVIGVLM 114
R+YF HGG NRWV TLVQS GFP L+ AG P S PRPF W +RR LA C+VIG LM
Sbjct: 52 RFYFTHGGRNRWVVTLVQSAGFPLLVAGALAGGRPASAPRPFTWLSRRFLAVCLVIGALM 111
Query: 115 GVNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAIIVRHPLNFSNLNAVVLLTLSSVLI 174
G NN A +IVRHP+ F NLNAVVLLTLSSVL+
Sbjct: 112 GANNLLFAYSTSLLPVSTSSLLLSTQLAFTLVLAVVIVRHPVTFVNLNAVVLLTLSSVLL 171
Query: 175 ALRSSDSGEQP----GGGSRARYFVGFAVTLGAAGLFAAYLPVMELVYRKAVSGGFRMAV 230
ALRS DSGE GGG R Y VGF VTLGAAGLF+AYLPVMELVYR+AVSGGF +AV
Sbjct: 172 ALRSGDSGETAEGGVGGGGRKSYLVGFVVTLGAAGLFSAYLPVMELVYREAVSGGFVLAV 231
Query: 231 EVQVIMQXXXXXXXXXXXXXXXXWKEELARW---DLSPXXXXXXXXXXXXXXXXCLMGTA 287
EVQ +MQ ++++ W SP C MGTA
Sbjct: 232 EVQAVMQAMASLIAAVGLAASGGVADDVSGWVDGGSSPAVYWAVVATLVLTWQACFMGTA 291
Query: 288 GMVYLTSSLHSGVCMTAVLTANVIGGVVVFRDPFGADKAVATVLCVWGFSSYLYGEY--- 344
G++YLTSSLHSGVCM AVLT NV+GGV VF DPFGA+KA+AT LC WGFSSYLYGEY
Sbjct: 292 GVIYLTSSLHSGVCMAAVLTLNVLGGVAVFGDPFGAEKALATALCAWGFSSYLYGEYAKA 351
Query: 345 -------------TTQKKVDGDGKVXXXXXXXXXXXXDKIPTGGGAAEGD 381
+ DG+G V K TGGGAA G
Sbjct: 352 KKVAAAAAVAAAEEEESASDGEGSV------------HKSLTGGGAAGGH 389
>Os01g0504100 Protein of unknown function DUF6, transmembrane domain containing
protein
Length = 379
Score = 209 bits (533), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 143/299 (47%), Positives = 171/299 (57%), Gaps = 6/299 (2%)
Query: 56 RYYFAHGGHNRWVATLVQSVGFPFLLVPVYAGRSPSQPRPFAWFTRRLLAACVVIGVLMG 115
R+YFAHGG +RW+ATLVQS GFP LL+P+ R P+ RPFA FT RL+ CV++G++MG
Sbjct: 68 RFYFAHGGADRWLATLVQSAGFPALLLPLMCARRPAS-RPFAGFTPRLVMYCVLLGLVMG 126
Query: 116 VNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAIIVRHPLNFSNLNAVVLLTLSSVLIA 175
+NN AA +VR PL+F+N NAVVLLTLSS+L+A
Sbjct: 127 LNNLLYSCGTSYLPVSTTALLLSMQLAFTLALAAALVRVPLSFANFNAVVLLTLSSLLLA 186
Query: 176 LRSSDSGEQPG-GGSRARYFVGFAVTLGAAGLFAAYLPVMELVYRKAVSGGFRMAVEVQV 234
LR G G + Y VG A TLGAA LFA YLP ELVYR GFRM VE QV
Sbjct: 187 LRHGAGGGGGGADATSPDYLVGVAATLGAALLFALYLPAAELVYRHGGVTGFRMVVEAQV 246
Query: 235 IMQXXXXXXXXXXXXXXX----XWKEELARWDLSPXXXXXXXXXXXXXXXXCLMGTAGMV 290
IM+ W A WDLSP C +GTAG V
Sbjct: 247 IMEAVATAVGAAGMVSSAGGKWPWDGVEATWDLSPAAYYAVVGAAVLSWQLCFLGTAGTV 306
Query: 291 YLTSSLHSGVCMTAVLTANVIGGVVVFRDPFGADKAVATVLCVWGFSSYLYGEYTTQKK 349
+LT+SLH G+CMTA+L NV GGVVVF D FG +KAVA +LC+W FSSY+YGEY K
Sbjct: 307 FLTTSLHGGICMTALLAVNVAGGVVVFGDEFGPEKAVAMLLCLWAFSSYVYGEYKKGDK 365
>Os09g0467400 Protein of unknown function DUF6, transmembrane domain containing
protein
Length = 361
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 139/298 (46%), Gaps = 13/298 (4%)
Query: 56 RYYFAHGGHNRWVATLVQSVGFPFLLVPVYAG----RSPSQPRPFAWFTRRLLAACVVIG 111
R YF+ GGH +W++ +Q+ G+P LLVPV A R+ + P R+L A V +G
Sbjct: 47 RLYFSKGGHRQWLSAWLQTAGWPLLLVPVAASYLSRRARDRRAPLFLTPTRVLLAGVGLG 106
Query: 112 VLMGVNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAIIVRHPLNFSNLNAVVLLTLSS 171
L G ++ A +IVR + LNAV LLT+ +
Sbjct: 107 FLNGADDFIYAYGLAYLPVSTSAILISTQLAFTVFFACLIVRQRFTAATLNAVALLTIGA 166
Query: 172 VLIALRSSDSGEQPGGGSRARYFVGFAVTLGAAGLFAAYLPVMELVYRKAVSGG----FR 227
V++ L +S ++P G + +Y++GF +TLGAA L+ LP++EL Y+ A GG +
Sbjct: 167 VVLGLHASK--DRPAGVTSGKYWMGFFLTLGAAALYGLILPLVELAYKHAAGGGRAVTYA 224
Query: 228 MAVEVQVIMQXXXXXXXXXXXXXXXXWK---EELARWDLSPXXXXXXXXXXXXXXXXCLM 284
+ +E+Q++M ++ E +++L +
Sbjct: 225 LVMEMQLVMGFFATAFCTVGMVVNKDFQAIPREAKQYELGEARYYVVLVFNAVLWEFFFV 284
Query: 285 GTAGMVYLTSSLHSGVCMTAVLTANVIGGVVVFRDPFGADKAVATVLCVWGFSSYLYG 342
G G+++ +L +G+ + + + GV+ + F ++K VA VL +WG +SY YG
Sbjct: 285 GAVGVIFCVHTLLAGIIIAVFIPITEVLGVIFLHEKFSSEKGVALVLSLWGLASYSYG 342
>Os09g0467300 Protein of unknown function DUF6, transmembrane domain containing
protein
Length = 390
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 137/310 (44%), Gaps = 24/310 (7%)
Query: 56 RYYFAHGGHNRWVATLVQSVGFPFLLVPVY---------------AGRSPSQPRPFAWFT 100
R YF GG+ +W+++L+Q+ G+P LL P+ + + P T
Sbjct: 59 RAYFLRGGNRKWLSSLLQTAGWPLLLAPLCFSYSSRRRRREVEDDGAGAGAAATPLFLMT 118
Query: 101 RRLLAACVVIGVLMGVNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAIIVRHPLNFSN 160
RLL A V+G++ GV++ A ++VR +
Sbjct: 119 PRLLVASAVVGLMTGVDDLLYAYGLAYLPVSTSSILISTQLAFTAAFALLLVRQRFTAFS 178
Query: 161 LNAVVLLTLSSVLIALRSSDSGEQPGGGSRARYFVGFAVTLGAAGLFAAYLPVMEL--VY 218
+NAVVLL++ + ++ + + G++P G SRA+Y GFA+TL AA L+ LPVMEL +
Sbjct: 179 VNAVVLLSVGAAMLGMNAG--GDRPAGVSRAQYCAGFAMTLAAAALYGLVLPVMELSQAH 236
Query: 219 RKAVSGG--FRMAVEVQVIMQXXXXXXXXXXXXXXXXWKE---ELARWDLSPXXXXXXXX 273
A G + + +E+Q+++ + E + L
Sbjct: 237 HAAARGAVTYTLVMEMQLVIGFVATAFSAVGMLVNNDFHAIPGEAHEFGLGQAGYYLLLA 296
Query: 274 XXXXXXXXCLMGTAGMVYLTSSLHSGVCMTAVLTANVIGGVVVFRDPFGADKAVATVLCV 333
+GT G ++ S+L +GV MT ++ + V+ F +PF K VA L +
Sbjct: 297 GSAAMYQCFFLGTIGAIFYGSALLAGVIMTVLIPVTEVLAVMFFHEPFNGTKGVALALSL 356
Query: 334 WGFSSYLYGE 343
WGF SY YGE
Sbjct: 357 WGFVSYFYGE 366
>Os09g0467500 Protein of unknown function DUF6, transmembrane domain containing
protein
Length = 253
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 99/189 (52%), Gaps = 10/189 (5%)
Query: 56 RYYFAHGGHNRWVATLVQSVGFPFLLVPVYAG----RSPSQPRPFAWFTRRLLAACVVIG 111
R YF+ GGH +W++ +++ G+P LLVPV A R+ + P RR+L ACV +G
Sbjct: 47 RLYFSKGGHRQWLSAWLETAGWPLLLVPVSASYLGRRARDRGAPLFLTPRRVLLACVGLG 106
Query: 112 VLMGVNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAIIVRHPLNFSNLNAVVLLTLSS 171
VL G ++ A +IVR L + LNAV LLT+ +
Sbjct: 107 VLTGADDFIYAYGLDYLPVSTSAILTSTHLAFTVFFACLIVRQRLTAATLNAVALLTIGA 166
Query: 172 VLIALRSSDSGEQPGGGSRARYFVGFAVTLGAAGLFAAYLPVMELVYRKAVSGG----FR 227
V++ L S ++P G + +Y++GF + +GAA L+ LP++EL Y+ + G +
Sbjct: 167 VVLGLHVSK--DRPAGVTNGKYWMGFFLIIGAAALYGLILPLVELAYKHVAARGRAVTYA 224
Query: 228 MAVEVQVIM 236
+ +E+Q++M
Sbjct: 225 LVMEMQLVM 233
>Os09g0548600
Length = 346
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 71/315 (22%), Positives = 121/315 (38%), Gaps = 17/315 (5%)
Query: 56 RYYFAHGGHNRWVATLVQSVG-----FPFLLVPVYAGRSPSQPRPFAWFTRRLLAACVVI 110
R Y+ GG++ W+ TL QS G PFLL P A +P P A +++A CV +
Sbjct: 19 RLYYNSGGNSLWMVTLAQSAGAPLLVIPFLLTPRAAAVGEPRPAPAA---SKMVAICVAL 75
Query: 111 GVLMGVNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAIIVRHPLNFSNLNAVVLLTLS 170
G+++G +N + +I +N+VV+LT S
Sbjct: 76 GLVVGCDNLMYSYAMLYLPVSTFSLLAATQLAFNAVTSRLINAQRFTPLVVNSVVVLTFS 135
Query: 171 SVLIALRS----SDSGEQPGGGSRARYFVGFAVTLGAAGLFAAYLPVMELVYRKAVSGGF 226
+ L+ + G R ++ G +TL A+ ++A L + E + K +
Sbjct: 136 AALLGVDDPSSSVGGGAGGDAVQRGKHAAGVVLTLSASAVYALILSLFEATFDKVIGAAT 195
Query: 227 -RMAVEVQVIMQXXXXXXXXXXXXXXXXWKE---ELARWDLSPXXXXXXXXXXXXXXXXC 282
R +++Q+ W+ E+A +
Sbjct: 196 PRWVLKMQISTNAVAATVSATALFASGEWRTIGGEMAAFKGGKAAYAATVVGVAVGWQAA 255
Query: 283 LMGTAGMVYLTSSLHSGVCMTAVLTANVIGGVVVFRDPFGADKAVATVLCVWGFSSYLYG 342
+G ++ SSL + V T L + V +F D K VA ++ VWGF SY+Y
Sbjct: 256 TLGAVRLIARVSSLFANVTGTLALPMVPVLAVALFGDKMTGTKVVAMLMAVWGFLSYVYQ 315
Query: 343 EYTTQKKVDG-DGKV 356
Y ++ +G+V
Sbjct: 316 HYLDGRRAAAREGRV 330
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.137 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,163,991
Number of extensions: 341482
Number of successful extensions: 695
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 670
Number of HSP's successfully gapped: 8
Length of query: 387
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 284
Effective length of database: 11,657,759
Effective search space: 3310803556
Effective search space used: 3310803556
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)