Os09g0467400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF6, transmembrane domain containing protein.
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Os09g0467400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF6, transmembrane domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.06 | 0.24 | 12.2 | 0.62 | 0.428 | -1.21 | -0.162 | -0.708 | 0.171 | 3.95 | 13.41 | 11370 | -- | -- |
| 26.58 | 0.24 | 12.1 | 0.807 | 0.402 | -1.13 | -0.19 | -- | 0.242 | 3.84 | 13.12 | 12185 | -- | -- |
| 26.13 | 0.238 | 12.2 | 0.618 | 0.425 | -1.22 | -- | -0.736 | 0.175 | 3.94 | 13.28 | 11390 | -- | -- |
| 26.68 | 0.241 | 12.1 | 0.8 | 0.404 | -1.11 | -- | -- | 0.239 | 3.86 | 13.45 | 12193 | -- | -- |
| 34.81 | 0.275 | 12.1 | 0.732 | -- | -1.22 | -- | -0.702 | 0.246 | -- | 12.92 | 13455 | -- | -- |
| 47.61 | 0.323 | 12.2 | 0.0507 | 0.385 | -- | -0.214 | -- | -0.165 | 4.08 | -- | -- | -- | -- |
| 47.74 | 0.324 | 12.2 | 0.0532 | 0.384 | -- | -- | -- | -0.163 | 4.12 | -- | -- | -- | -- |
| 35.18 | 0.276 | 12.1 | 1.14 | -- | -1.14 | -- | -- | 0.312 | -- | 13.59 | 29237 | -- | -- |
| 32.12 | 0.264 | 12.2 | -- | 0.434 | -0.642 | -- | -- | -0.0688 | 3.92 | 22.3 | 5572 | -- | -- |
| 55.76 | 0.349 | 12.2 | 0.0687 | -- | -- | -- | -- | -0.153 | -- | -- | -- | -- | -- |
| 47.81 | 0.323 | 12.2 | -- | 0.385 | -- | -- | -- | -0.169 | 4.12 | -- | -- | -- | -- |
| 40.07 | 0.295 | 12.2 | -- | -- | -0.607 | -- | -- | -0.0959 | -- | 26.03 | 6238 | -- | -- |
| 55.89 | 0.349 | 12.2 | -- | -- | -- | -- | -- | -0.161 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.34 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 3 | 25.35 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 10 | 25.46 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 16 | 16 |
| 12 | 25.54 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 14 | 5 |
| 13 | 25.54 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 17 | 12 |
| 20 | 25.61 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 36 | 25.68 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 17 | 19 |
| 55 | 25.80 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 57 | 25.82 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 17 | 18 |
| 62 | 25.84 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 17 | 12 |
| 65 | 25.85 | radiation | 1.0 | 14400 | > th | dose independent | sin | 12 | NA |
| 83 | 25.89 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 84 | 25.90 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 108 | 25.91 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 110 | 25.91 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 112 | 25.93 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 113 | 25.93 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 15 | 17 |
| 133 | 25.97 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 18 | 12 |
| 135 | 25.98 | radiation | 1.0 | 14400 | < th | dose independent | sin | 11 | NA |
| 141 | 25.99 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 149 | 25.99 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 181 | 26.03 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 199 | 26.05 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 200 | 26.06 | radiation | 1.0 | 14400 | > th | dose independent | no | NA | NA |
| 201 | 26.06 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 15 |
| 259 | 26.08 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 23 |
| 294 | 26.12 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 322 | 26.15 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 7 | 4 |
| 328 | 26.15 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 14 | 17 |
| 329 | 26.16 | radiation | 1.0 | 14400 | < th | dose independent | no | NA | NA |
| 330 | 26.16 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 15 |
| 371 | 26.16 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 9 | 23 |
| 415 | 26.20 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 17 | 13 |
| 421 | 26.21 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 12 |
| 449 | 26.22 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 18 | 13 |
| 463 | 26.23 | temperature | 10.0 | 14400 | > th | dose dependent | sin | 11 | NA |
| 466 | 26.23 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 20 | 11 |
| 467 | 26.23 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 479 | 26.24 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 488 | 26.24 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 20 | 11 |
| 530 | 26.26 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 8 |
| 547 | 26.26 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 22 | 2 |
| 549 | 26.26 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 22 | 3 |
| 584 | 26.27 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 22 | 19 |
| 595 | 26.28 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 3 | 9 |
| 608 | 26.28 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 4 |
| 663 | 26.29 | temperature | 30.0 | 14400 | < th | dose dependent | sin | 10 | NA |
| 703 | 26.30 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 9 | 10 |
| 726 | 26.30 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 20 | 7 |
| 727 | 26.30 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 20 | 7 |
| 766 | 26.31 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 6 |
| 812 | 26.31 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 5 | 7 |
| 845 | 26.32 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 7 | 14 |
| 855 | 26.32 | temperature | 10.0 | 14400 | > th | dose dependent | no | NA | NA |
| 925 | 26.33 | atmosphere | 1005.0 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 977 | 26.34 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 986 | 26.34 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 17 | 9 |