Os01g0680200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF6, transmembrane domain containing protein.
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Os01g0680200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF6, transmembrane domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 417.79 | 0.96 | 7.03 | -1.38 | 1.77 | 2.18 | 1.33 | 4.7 | 0.441 | 4.07 | 21.6 | 1331 | -- | -- |
| 458.46 | 0.997 | 7.19 | -2.43 | 1.74 | 1.86 | 2.38 | -- | 0.129 | 4.68 | 21.9 | 1048 | -- | -- |
| 422.49 | 0.957 | 7.03 | -1.36 | 1.77 | 2.17 | -- | 4.81 | 0.445 | 3.94 | 21.62 | 1321 | -- | -- |
| 465.95 | 1.01 | 7.19 | -2.52 | 1.76 | 1.78 | -- | -- | 0.139 | 4.38 | 22 | 1020 | -- | -- |
| 587.27 | 1.13 | 7.06 | -1.15 | -- | 2.24 | -- | 4.92 | 0.448 | -- | 21.89 | 1194 | -- | -- |
| 585.23 | 1.13 | 7.06 | -1.9 | 1.86 | -- | 1.45 | -- | 0.72 | 3.94 | -- | -- | -- | -- |
| 591.09 | 1.14 | 7.06 | -1.92 | 1.87 | -- | -- | -- | 0.712 | 3.81 | -- | -- | -- | -- |
| 628.98 | 1.17 | 7.21 | -2.56 | -- | 1.98 | -- | -- | 0.116 | -- | 22.04 | 1091 | -- | -- |
| 619.02 | 1.16 | 7.1 | -- | 1.81 | 1.2 | -- | -- | 0.512 | 4.35 | 22.4 | 889 | -- | -- |
| 783.38 | 1.31 | 7.07 | -1.84 | -- | -- | -- | -- | 0.761 | -- | -- | -- | -- | -- |
| 687.93 | 1.23 | 7.02 | -- | 1.83 | -- | -- | -- | 0.925 | 3.82 | -- | -- | -- | -- |
| 782.49 | 1.3 | 7.1 | -- | -- | 1.41 | -- | -- | 0.539 | -- | 22.4 | 1063 | -- | -- |
| 872.62 | 1.38 | 7.02 | -- | -- | -- | -- | -- | 0.966 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 420.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 2 | 421.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 15 |
| 17 | 428.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 17 |
| 22 | 430.06 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 29 | 431.84 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 55 | 434.53 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 58 | 434.69 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 16 |
| 63 | 434.95 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 14 |
| 66 | 435.16 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 6 |
| 103 | 437.93 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 239 | 442.33 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 243 | 442.53 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 301 | 443.53 | temperature | 25 | 720 | < th | dose dependent | rect. | 2 | 22 |
| 348 | 444.33 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 380 | 444.81 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 9 |
| 389 | 444.90 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 499 | 446.11 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 554 | 446.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 7 |
| 701 | 447.86 | temperature | 25 | 720 | < th | dose dependent | rect. | 2 | 16 |
| 715 | 448.05 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 767 | 448.69 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 1 |