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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0467300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF6, transmembrane domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.46 (0.024) R2 : 0.00916
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.104 (0.0506) R2dN8 : 0.0118 R2N8 : 0.00916
σ : 0.453
deviance : 93.99
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
83.76 0.43 3.39 0.585 0.286 -0.0556 -0.195 4.5 -0.0356 3.7 29.7 757 -- --
84.06 0.427 3.45 0.13 0.292 0.382 -0.241 -- -0.0982 3.74 26.8 816 -- --
83.88 0.427 3.39 0.587 0.288 -0.0548 -- 4.56 -0.0331 3.68 29.6 743 -- --
84.07 0.427 3.45 0.126 0.295 0.467 -- -- -0.0862 4.25 27 801 -- --
87.24 0.435 3.37 0.789 -- -0.168 -- 4.77 -0.0237 -- 30.1 948 -- --
88.94 0.442 3.45 0.211 0.248 -- -0.166 -- -0.0859 2.5 -- -- -- --
89.03 0.442 3.45 0.216 0.247 -- -- -- -0.0847 2.27 -- -- -- --
87.09 0.435 3.46 0.117 -- 0.409 -- -- -0.118 -- 25.1 1038 -- --
84.43 0.428 3.45 -- 0.299 0.499 -- -- -0.104 4.42 26.52 803 -- --
92.64 0.45 3.45 0.226 -- -- -- -- -0.0787 -- -- -- -- --
90.25 0.444 3.46 -- 0.251 -- -- -- -0.109 2.29 -- -- -- --
87.4 0.435 3.46 -- -- 0.44 -- -- -0.133 -- 24.95 1039 -- --
93.99 0.453 3.46 -- -- -- -- -- -0.104 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 82.07 temperature 30 720 < th dose independent rect. 3 8
2 82.64 humidity 70 270 < th dose independent rect. 16 16
3 82.67 humidity 70 270 < th dose independent rect. 17 14
6 82.74 temperature 25 270 > th dose dependent rect. 17 12
7 82.75 humidity 70 270 < th dose independent rect. 17 3
18 82.75 temperature 25 270 > th dose dependent rect. 17 10
33 82.80 humidity 70 90 < th dose independent rect. 19 12
44 83.00 temperature 30 720 < th dose independent rect. 15 8
46 83.02 temperature 25 270 > th dose dependent sin 12 NA
50 83.07 humidity 70 90 < th dose dependent rect. 19 12
56 83.15 temperature 25 270 > th dose dependent rect. 18 2
58 83.17 temperature 25 270 > th dose dependent rect. 17 4
59 83.18 humidity 70 90 < th dose independent rect. 19 1
86 83.26 humidity 80 270 < th dose dependent rect. 17 3
90 83.30 atmosphere 995 720 > th dose independent rect. 15 8
93 83.32 atmosphere 995 720 > th dose independent rect. 11 16
94 83.34 humidity 70 270 < th dose independent sin 12 NA
99 83.37 temperature 30 720 > th dose independent sin 11 NA
101 83.37 temperature 30 720 > th dose dependent rect. 14 21
102 83.38 atmosphere 1000 30 > th dose independent rect. 23 23
103 83.38 humidity 70 90 < th dose dependent rect. 19 1
116 83.40 humidity 70 90 > th dose independent sin 12 NA
117 83.40 temperature 30 720 > th dose independent rect. 15 20
137 83.45 humidity 50 270 > th dose dependent rect. 14 11
144 83.48 radiation 30 720 < th dose dependent rect. 15 10
145 83.50 humidity 70 10 > th dose independent rect. 14 12
149 83.51 temperature 30 720 > th dose dependent rect. 14 5
153 83.51 temperature 10 720 > th dose dependent rect. 11 9
184 83.53 temperature 20 720 > th dose dependent rect. 11 9
194 83.55 temperature 25 720 > th dose dependent rect. 11 15
198 83.56 temperature 30 270 < th dose independent sin 11 NA
226 83.59 temperature 30 720 < th dose independent rect. 13 22
227 83.59 radiation 30 720 < th dose independent rect. 13 22
233 83.60 radiation 30 720 < th dose independent rect. 13 20
236 83.61 radiation 20 720 < th dose independent rect. 14 18
257 83.62 humidity 80 270 < th dose dependent rect. 16 16
263 83.63 temperature 30 720 < th dose independent rect. 24 23
311 83.68 temperature 30 270 > th dose independent rect. 17 2
353 83.72 temperature 30 720 < th dose independent rect. 20 15
358 83.73 radiation 30 720 < th dose independent rect. 3 14
363 83.73 temperature 30 720 > th dose dependent rect. 18 17
370 83.74 humidity 70 90 > th dose independent rect. 15 10
381 83.74 humidity 60 10 > th dose dependent rect. 16 10
391 83.75 atmosphere 995 720 > th dose independent rect. 23 16
419 83.78 temperature 30 720 < th dose independent rect. 5 20
420 83.78 temperature 30 720 < th dose independent rect. 9 23
428 83.79 humidity 70 10 > th dose independent sin 11 NA
458 83.81 radiation 10 43200 < th dose dependent rect. 23 1
479 83.83 temperature 30 720 > th dose dependent no NA NA
635 83.84 radiation 30 720 < th dose independent rect. 19 23
661 83.85 temperature 30 720 > th dose dependent rect. 15 1
676 83.86 temperature 30 720 < th dose independent rect. 20 23
678 83.86 radiation 30 720 < th dose independent rect. 10 23
691 83.87 radiation 30 720 > th dose independent sin 12 NA
705 83.88 temperature 30 720 < th dose independent rect. 3 22
723 83.90 temperature 30 720 < th dose independent sin 14 NA
726 83.90 temperature 30 720 < th dose independent rect. 1 18
741 83.91 radiation 20 720 > th dose independent rect. 15 2
750 83.91 temperature 30 270 < th dose independent rect. 14 11
754 83.91 temperature 30 720 < th dose independent rect. 15 14
774 83.91 temperature 30 720 > th dose dependent rect. 17 23
828 83.93 temperature 30 720 > th dose independent rect. 15 4
838 83.93 radiation 30 720 < th dose independent rect. 5 12
862 83.94 radiation 30 720 < th dose independent rect. 3 22
880 83.95 radiation 30 720 > th dose independent rect. 14 23
888 83.95 humidity 60 30 > th dose dependent rect. 14 12
919 83.97 temperature 30 720 > th dose independent rect. 9 10
936 83.97 temperature 30 720 > th dose independent rect. 17 23
953 83.98 temperature 30 720 < th dose independent no NA NA
973 83.98 temperature 30 720 < th dose independent rect. 5 23
986 83.99 temperature 30 720 > th dose independent no NA NA