Os09g0467500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF6, transmembrane domain containing protein.
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Os09g0467500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF6, transmembrane domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.21 | 0.279 | 10.7 | 1.02 | 0.397 | -1.28 | -0.345 | 0.346 | 0.0634 | 2.61 | 10.19 | 4428 | -- | -- |
| 35.32 | 0.277 | 10.7 | 0.94 | 0.397 | -1.29 | -0.325 | -- | 0.0418 | 2.58 | 10.49 | 4438 | -- | -- |
| 35.62 | 0.278 | 10.7 | 1.03 | 0.401 | -1.28 | -- | 0.364 | 0.0673 | 2.7 | 8.345 | 4427 | -- | -- |
| 35.72 | 0.278 | 10.7 | 0.947 | 0.399 | -1.3 | -- | -- | 0.0443 | 2.73 | 10.3 | 4429 | -- | -- |
| 41.86 | 0.303 | 10.7 | 0.846 | -- | -1.45 | -- | 1.66 | 0.0502 | -- | 8.345 | 4427 | -- | -- |
| 65.5 | 0.379 | 10.8 | 0.336 | 0.35 | -- | -0.357 | -- | -0.212 | 2.55 | -- | -- | -- | -- |
| 65.94 | 0.38 | 10.8 | 0.345 | 0.352 | -- | -- | -- | -0.21 | 2.74 | -- | -- | -- | -- |
| 44.05 | 0.309 | 10.7 | 0.959 | -- | -1.28 | -- | -- | 0.0507 | -- | 8.676 | 4691 | -- | -- |
| 51.91 | 0.336 | 10.7 | -- | 0.423 | -0.868 | -- | -- | -0.109 | 1.96 | 15.3 | 2231 | -- | -- |
| 73.12 | 0.4 | 10.8 | 0.36 | -- | -- | -- | -- | -0.201 | -- | -- | -- | -- | -- |
| 69.08 | 0.389 | 10.8 | -- | 0.358 | -- | -- | -- | -0.249 | 2.75 | -- | -- | -- | -- |
| 53.68 | 0.342 | 10.7 | -- | -- | -1.17 | -- | -- | -0.103 | -- | 15.3 | 2231 | -- | -- |
| 76.55 | 0.408 | 10.8 | -- | -- | -- | -- | -- | -0.241 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.55 | temperature | 10 | 4320 | > th | dose dependent | rect. | 24 | 13 |
| 3 | 34.57 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 13 | 34.63 | temperature | 10 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 17 | 34.68 | temperature | 10 | 4320 | > th | dose dependent | sin | 5 | NA |
| 25 | 34.69 | temperature | 30 | 4320 | < th | dose dependent | rect. | 24 | 12 |
| 51 | 34.77 | temperature | 30 | 4320 | < th | dose dependent | sin | 5 | NA |
| 55 | 34.77 | temperature | 30 | 4320 | < th | dose dependent | rect. | 3 | 8 |
| 405 | 35.26 | temperature | 10 | 4320 | > th | dose dependent | no | NA | NA |
| 425 | 35.27 | temperature | 10 | 4320 | > th | dose dependent | rect. | 9 | 23 |
| 426 | 35.27 | temperature | 10 | 4320 | > th | dose dependent | rect. | 11 | 23 |
| 436 | 35.28 | temperature | 30 | 4320 | < th | dose dependent | rect. | 13 | 23 |
| 437 | 35.29 | temperature | 30 | 4320 | < th | dose dependent | no | NA | NA |
| 452 | 35.30 | temperature | 25 | 4320 | < th | dose dependent | rect. | 12 | 20 |
| 458 | 35.30 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 23 |
| 460 | 35.30 | temperature | 30 | 4320 | < th | dose dependent | rect. | 11 | 23 |
| 476 | 35.31 | temperature | 30 | 4320 | < th | dose dependent | rect. | 9 | 23 |
| 495 | 35.32 | temperature | 30 | 4320 | < th | dose dependent | rect. | 3 | 23 |
| 684 | 35.48 | temperature | 10 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 860 | 35.58 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 3 |