BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0672100 Os01g0672100|AK102794
(252 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0672100 No apical meristem (NAM) protein domain contai... 329 1e-90
Os05g0563000 No apical meristem (NAM) protein domain contai... 171 4e-43
Os01g0191300 No apical meristem (NAM) protein domain contai... 114 9e-26
Os06g0560300 No apical meristem (NAM) protein domain contai... 105 3e-23
Os05g0194500 No apical meristem (NAM) protein domain contai... 101 6e-22
Os02g0594800 No apical meristem (NAM) protein domain contai... 91 7e-19
Os04g0477300 No apical meristem (NAM) protein domain contai... 72 5e-13
>Os01g0672100 No apical meristem (NAM) protein domain containing protein
Length = 252
Score = 329 bits (844), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 176/252 (69%), Positives = 176/252 (69%)
Query: 1 MTWCNSFNDVRAVENNLATXXXXXXXXXXXXXXXXSQHVNLIKTCPSCGHRAQYEQXXXX 60
MTWCNSFNDVRAVENNLAT SQHVNLIKTCPSCGHRAQYEQ
Sbjct: 1 MTWCNSFNDVRAVENNLATAAAVAAAKKQQQQQQVSQHVNLIKTCPSCGHRAQYEQAAAA 60
Query: 61 XTIQDLPGLPAGVKFDPTDQELLEHLEGKARPDARKLHPLIDEFIPTIEGENGICYTHPE 120
TIQDLPGLPAGVKFDPTDQELLEHLEGKARPDARKLHPLIDEFIPTIEGENGICYTHPE
Sbjct: 61 ATIQDLPGLPAGVKFDPTDQELLEHLEGKARPDARKLHPLIDEFIPTIEGENGICYTHPE 120
Query: 121 RLPGTRQGRPDPALLPPPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRRQAEG 180
RLPGTRQGRPDPALLPPPV HRRQAEG
Sbjct: 121 RLPGTRQGRPDPALLPPPVEGVHDGDAEAAEGAHRRAGRRDAVAQDRQDAAGVHRRQAEG 180
Query: 181 VQEDPGALHQLRQAAQAGEDQLGDAXXXXXXXXXXXXXXXXXXXXXLPDAAEAVRRRLGS 240
VQEDPGALHQLRQAAQAGEDQLGDA LPDAAEAVRRRLGS
Sbjct: 181 VQEDPGALHQLRQAAQAGEDQLGDAPVPPGLRRGGEGRRARRVQGVLPDAAEAVRRRLGS 240
Query: 241 DGQGPLRRPRRR 252
DGQGPLRRPRRR
Sbjct: 241 DGQGPLRRPRRR 252
>Os05g0563000 No apical meristem (NAM) protein domain containing protein
Length = 314
Score = 171 bits (434), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 84/127 (66%), Positives = 93/127 (73%), Gaps = 4/127 (3%)
Query: 1 MTWCNSFNDVRAVENNLATXXXXXXXXXXXXXXXXSQHVNLIKTCPSCGHRAQYEQXXXX 60
MTWCNSF+DVR ++ + L+K CPSCGHRA+YEQ
Sbjct: 1 MTWCNSFSDVRTAVDSSLSPAAAVAAAAGKKAAASLA--VLVKMCPSCGHRARYEQETT- 57
Query: 61 XTIQDLPGLPAGVKFDPTDQELLEHLEGKARPDARKLHPLIDEFIPTIEGENGICYTHPE 120
TIQDLPGLPAGVKFDPTDQELLEHLEGKARPD+RKLHPL+DEFIPTIEGENGICYTHPE
Sbjct: 58 -TIQDLPGLPAGVKFDPTDQELLEHLEGKARPDSRKLHPLVDEFIPTIEGENGICYTHPE 116
Query: 121 RLPGTRQ 127
RLPG +
Sbjct: 117 RLPGVSK 123
>Os01g0191300 No apical meristem (NAM) protein domain containing protein
Length = 433
Score = 114 bits (284), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 56/91 (61%), Positives = 66/91 (72%), Gaps = 9/91 (9%)
Query: 39 VNLIKTCPSCGHRAQYEQXXXXXTIQDLPGLPAGVKFDPTDQELLEHLEGKARPDARKLH 98
++ K CPSCG++ + D GLPAGVKFDPTDQEL+EHLE K R + + H
Sbjct: 21 ISTAKHCPSCGNKLDCKP--------DWVGLPAGVKFDPTDQELIEHLEAKVREEGSRSH 72
Query: 99 PLIDEFIPTIEGENGICYTHPERLPG-TRQG 128
PLIDEFIPTIEGE+GICYTHPE+LPG TR G
Sbjct: 73 PLIDEFIPTIEGEDGICYTHPEKLPGVTRDG 103
>Os06g0560300 No apical meristem (NAM) protein domain containing protein
Length = 110
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/89 (59%), Positives = 62/89 (69%), Gaps = 9/89 (10%)
Query: 37 QHVNLIKTCPSCGHRAQYEQXXXXXTIQDLPGLPAGVKFDPTDQELLEHLEGKARPDARK 96
++++ CP CGH+ + D GLPAGVKFDPTDQEL+EHLE K RP
Sbjct: 30 KYMSEESCCPRCGHKIDRKL--------DWVGLPAGVKFDPTDQELIEHLEAKVRPGGEA 81
Query: 97 L-HPLIDEFIPTIEGENGICYTHPERLPG 124
HPLIDEFIPTIEGE+GICYTHPE+LPG
Sbjct: 82 AAHPLIDEFIPTIEGEDGICYTHPEKLPG 110
>Os05g0194500 No apical meristem (NAM) protein domain containing protein
Length = 104
Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 56/80 (70%), Gaps = 6/80 (7%)
Query: 45 CPSCGHRAQYEQXXXXXTIQDLPGLPAGVKFDPTDQELLEHLEGKARPDARKLHPLIDEF 104
CPSCGH + D+ G+PAGV+FDPTDQEL+EHLE K + HPLIDEF
Sbjct: 30 CPSCGHDPDCNKPF------DMVGMPAGVRFDPTDQELIEHLEAKVKDGGSTSHPLIDEF 83
Query: 105 IPTIEGENGICYTHPERLPG 124
I TI+GE+GICYTHPE LPG
Sbjct: 84 IHTIQGEDGICYTHPENLPG 103
>Os02g0594800 No apical meristem (NAM) protein domain containing protein
Length = 393
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 53/83 (63%), Gaps = 5/83 (6%)
Query: 45 CPSCGHRAQYEQXXXXXTIQDLPGLPAGVKFDPTDQELLEHLEGKARPDARKLHPLIDEF 104
CP+C H IQ PGLPAGVKFDP+D ELLEHLE K K H IDEF
Sbjct: 38 CPNCKHVID----NSDVAIQ-WPGLPAGVKFDPSDLELLEHLEQKIGLGGSKPHTFIDEF 92
Query: 105 IPTIEGENGICYTHPERLPGTRQ 127
IPTI+ + GICY+HPE LPG ++
Sbjct: 93 IPTIDNDEGICYSHPENLPGMKK 115
>Os04g0477300 No apical meristem (NAM) protein domain containing protein
Length = 176
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 45 CPSCGHRAQYEQXXXXXTIQDLPGLPAGVKFDPTDQELLEHLEGKARPDARKLHPLIDEF 104
CP+C + T+Q P P GVKFDP+D E+LEHLE K LID F
Sbjct: 46 CPNC----KCHIDNSDVTLQ-WPEFPDGVKFDPSDLEVLEHLERKINLGNPGPQGLIDHF 100
Query: 105 IPTIEGENGICYTHPERLPGTR 126
IPT+E GICYTHPE LPG +
Sbjct: 101 IPTLEKVEGICYTHPENLPGIK 122
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.137 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,352,593
Number of extensions: 255441
Number of successful extensions: 861
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 852
Number of HSP's successfully gapped: 7
Length of query: 252
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 154
Effective length of database: 11,918,829
Effective search space: 1835499666
Effective search space used: 1835499666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)