BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0662700 Os01g0662700|AK068152
(331 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0662700 Similar to Naphthoate synthase (EC 4.1.3.36) 615 e-176
Os02g0654100 Similar to Enoyl-CoA hydratase 108 7e-24
Os03g0310400 Enoyl-CoA hydratase/isomerase domain containin... 103 2e-22
Os05g0155000 Similar to Protein MFP-b 75 5e-14
Os05g0362100 Similar to Protein MFP-b 74 2e-13
Os01g0925200 Similar to Enoyl CoA hydratase-like protein 71 1e-12
>Os01g0662700 Similar to Naphthoate synthase (EC 4.1.3.36)
Length = 331
Score = 615 bits (1586), Expect = e-176, Method: Compositional matrix adjust.
Identities = 305/331 (92%), Positives = 305/331 (92%)
Query: 1 MDAAGRRLARVTAHXXXXXXXXXXXXXXXXXXXXXXXXXXDSYRRVHGDVPSEPPEWRAA 60
MDAAGRRLARVTAH DSYRRVHGDVPSEPPEWRAA
Sbjct: 1 MDAAGRRLARVTAHLLPSSLPLPLASAPTLAPSPAASPASDSYRRVHGDVPSEPPEWRAA 60
Query: 61 TDESGKGFVDILYDKAVGEGIAKITINRPDRRNAFRPLTVKELMRAFEDARDDSSIGVII 120
TDESGKGFVDILYDKAVGEGIAKITINRPDRRNAFRPLTVKELMRAFEDARDDSSIGVII
Sbjct: 61 TDESGKGFVDILYDKAVGEGIAKITINRPDRRNAFRPLTVKELMRAFEDARDDSSIGVII 120
Query: 121 LTGKGTQSFCSGGDQALRDADGYVDFDSFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGG 180
LTGKGTQSFCSGGDQALRDADGYVDFDSFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGG
Sbjct: 121 LTGKGTQSFCSGGDQALRDADGYVDFDSFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGG 180
Query: 181 HVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGTSIMSRLVGPKKAREMWFLSRFYTADE 240
HVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGTSIMSRLVGPKKAREMWFLSRFYTADE
Sbjct: 181 HVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGTSIMSRLVGPKKAREMWFLSRFYTADE 240
Query: 241 ADRMGLVNVVVPLADLERETVKWCRKILRNSPTAIRVLKSALNAADDGHAGLQELGGNAT 300
ADRMGLVNVVVPLADLERETVKWCRKILRNSPTAIRVLKSALNAADDGHAGLQELGGNAT
Sbjct: 241 ADRMGLVNVVVPLADLERETVKWCRKILRNSPTAIRVLKSALNAADDGHAGLQELGGNAT 300
Query: 301 LIFYGTEEAKEGKNAYMERRRPDFSKFPRKP 331
LIFYGTEEAKEGKNAYMERRRPDFSKFPRKP
Sbjct: 301 LIFYGTEEAKEGKNAYMERRRPDFSKFPRKP 331
>Os02g0654100 Similar to Enoyl-CoA hydratase
Length = 300
Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 121/249 (48%), Gaps = 6/249 (2%)
Query: 80 GIAKITINRPDRRNAFRPLTVKELMRAFEDARDDSSIGVIILTGKGTQSFCSGGDQALRD 139
GI ++ + RP+ RNA ++ L A E + D++ V++L + FC+G D R
Sbjct: 53 GIVEMRLERPEARNAIGREMLQGLRSAIEKVKADATAKVVLLASSVPKVFCAGADLKERR 112
Query: 140 ADGYVDFDSFGRLNVL-DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
+ F +N L + L P IA+V G A GGG L + CDL I +NA F
Sbjct: 113 LMSPCEVREF--VNSLRSTFLSFEALSIPTIAIVEGAAFGGGLELALSCDLRICGENATF 170
Query: 199 GQTGPKVGSFDAGYGTSIMSRLVGPKKAREMWFLSRFYTADEADRMGLVNVVVPLADLER 258
+ GT + R+VG +A+E+ F R + A EA MG+VN VP + +
Sbjct: 171 SLPETGLAIIPGAGGTQRLPRIVGKSRAKELIFTGRRFDAVEAVTMGVVNYCVPAGEAYK 230
Query: 259 ETVKWCRKILRNSPTAIRVLKSALNAAD--DGHAGLQELGGNATLIFYGTEEAKEGKNAY 316
++ ++I + P AIR+ K A+N D AGL + + T++ EG A+
Sbjct: 231 RALELAQEINQKGPLAIRMAKKAINQGMEVDLSAGLAVEEECYEQVLH-TQDRLEGLAAF 289
Query: 317 MERRRPDFS 325
E+R+P ++
Sbjct: 290 AEKRKPVYT 298
>Os03g0310400 Enoyl-CoA hydratase/isomerase domain containing protein
Length = 268
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 109/207 (52%), Gaps = 7/207 (3%)
Query: 78 GEGIAKITINRPDRRNAF-RPLTVKELMRAFEDARDDSSIGVIILTGKGTQSFCSGGDQA 136
G +A +TINRP NA RP+ V L AF D + ++L G+G ++FCSG D
Sbjct: 20 GSRVAVVTINRPKALNALTRPMMV-SLAAAFRRLDADDGVAAVVLAGRG-RAFCSGVD-- 75
Query: 137 LRDADGYVDFDSFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNA 196
L A+ D + D VQ+ R KP++ +AG+AV G + + CD+ +A +A
Sbjct: 76 LTAAEEVFKGDV--KDPAADPVVQMERCRKPIVGAIAGFAVTAGFEIALACDILVAGRSA 133
Query: 197 IFGQTGPKVGSFDAGYGTSIMSRLVGPKKAREMWFLSRFYTADEADRMGLVNVVVPLADL 256
F T K G F + + +SR++GP +ARE+ TA+ A++ GLVN +V +
Sbjct: 134 KFIDTHAKFGIFPSWGLSQKLSRVIGPNRAREVSLTCMPITAEMAEKWGLVNHIVDDTQV 193
Query: 257 ERETVKWCRKILRNSPTAIRVLKSALN 283
+ ++ C I RN+ + + KS +N
Sbjct: 194 LSKAIEVCEAIARNNRNLVVLYKSVIN 220
>Os05g0155000 Similar to Protein MFP-b
Length = 724
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 94/201 (46%), Gaps = 26/201 (12%)
Query: 80 GIAKITINRPDRRNAFRPLTVKELMRAFEDARDDSSIGVIILTGKGTQSFCSGGDQALRD 139
G+A ITI+ P NA + L +E+A + + I++TGKG SGG
Sbjct: 15 GVALITISNPPV-NALSIHVLYSLKDHYEEALRRNDVKAIVVTGKG--GVFSGG------ 65
Query: 140 ADGYVDFDSFG----------RLNVLDLQVQIRRLP---KPVIAMVAGYAVGGGHVLHMV 186
+D ++FG +++ + + V L KP +A + G A+GGG + MV
Sbjct: 66 ----LDINTFGAIQRNKAEQLKVDYVSIDVMTNTLEAAGKPSVAAINGPALGGGLEISMV 121
Query: 187 CDLTIAADNAIFGQTGPKVGSFDAGYGTSIMSRLVGPKKAREMWFLSRFYTADEADRMGL 246
C I+ A G ++G A GT + RLVG KA EM +S+ A+EA ++ L
Sbjct: 122 CQARISIPTAQLGLPELQLGVIPAFGGTQRLPRLVGLTKALEMMLMSKPIKAEEAHQLAL 181
Query: 247 VNVVVPLADLERETVKWCRKI 267
++ +V DL +W I
Sbjct: 182 IDAIVSPNDLLNTACRWALDI 202
>Os05g0362100 Similar to Protein MFP-b
Length = 465
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 92/193 (47%), Gaps = 6/193 (3%)
Query: 79 EGIAKITINRPDRRNAFRPLTVKELMRAFEDARDDSSIGVIILTG-KGTQSFCSGGDQAL 137
+G+A IT++ P NA + L R + +A S + I+LTG KG F G D +
Sbjct: 13 DGVAVITVSNPPV-NALSLDVIASLQRDYGEALRRSDVKAIVLTGAKG--RFSGGFD--I 67
Query: 138 RDADGYVDFDSFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAI 197
D + G L++ L + PKP +A + G A+GGG L MVC ++ +A
Sbjct: 68 NAFDKKPKNEKPGYLSIDFLTDIVEDAPKPSVAAIDGVALGGGLELVMVCHARVSTSSAQ 127
Query: 198 FGQTGPKVGSFDAGYGTSIMSRLVGPKKAREMWFLSRFYTADEADRMGLVNVVVPLADLE 257
G ++G GT + RLVG KA EM +S+ EA + GLV+ VV +L
Sbjct: 128 LGLPELQLGIIPGLGGTQRLPRLVGLPKALEMLLMSKPLKGVEAHKFGLVDAVVSADELI 187
Query: 258 RETVKWCRKILRN 270
W +I+ +
Sbjct: 188 STACSWALEIVED 200
>Os01g0925200 Similar to Enoyl CoA hydratase-like protein
Length = 291
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 115/269 (42%), Gaps = 31/269 (11%)
Query: 80 GIAKITINRPDRRNAFRPLTVKELMRAFEDARDDSSIGVIILTGKGTQSFCSG------- 132
+ ++ +NRP R NA P E+ RA + ++L+ G FC+G
Sbjct: 33 AVYEVRLNRPTRLNALSPDAFAEIPRAMALLDRAPAARAVVLSAAGPH-FCAGIELGSPG 91
Query: 133 -------GDQALRDADGYVDFDSFGRLNVLDLQ---VQIRRLPKPVIAMVAGYAVGGGHV 182
GD A A+G R +L++Q I R KPV+A V G VGGG
Sbjct: 92 SPATAPSGDPAPAAAEGL-------RRAILEMQAALTAIERCRKPVVAAVHGACVGGGVE 144
Query: 183 LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGTSIMSRLVGPKKAREMWFLSRFYTADEAD 242
+ CD+ + +A F + + R+VG A ++ R TA EA
Sbjct: 145 VVAACDIRCCSKDATFVLREVDMAIVADLGALQRLPRIVGYGNAADLALTGRKITAMEAK 204
Query: 243 RMGLVN-VVVPLADLERETVKWCRKILRNSPTAIRVLKSALNAADD--GHAGLQELGG-N 298
MGLV V +L+ K ++I S A+ K+ L + D GL+ + N
Sbjct: 205 EMGLVTRVFNSKQELDAGVAKIAKEISEKSAWAVMGTKAVLLRSRDITVEQGLEHVATWN 264
Query: 299 ATLIFYGTEEAKEGKNAYMERRRPDFSKF 327
A ++ + + +E A++E+R+P FSK
Sbjct: 265 AAMLR--SNDLEEAIQAFLEKRKPVFSKL 291
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.138 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,153,831
Number of extensions: 468850
Number of successful extensions: 991
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 984
Number of HSP's successfully gapped: 9
Length of query: 331
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 230
Effective length of database: 11,762,187
Effective search space: 2705303010
Effective search space used: 2705303010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)