Os01g0925200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Enoyl CoA hydratase-like protein.
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Os01g0925200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Enoyl CoA hydratase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.6 | 0.288 | 12.6 | -0.313 | 0.346 | 1.21 | 0.682 | -0.543 | -0.204 | 17.1 | 14.34 | 321 | -- | -- |
| 37.75 | 0.286 | 12.5 | -0.229 | 0.348 | 1.2 | 0.532 | -- | -0.18 | 16.9 | 14.04 | 334 | -- | -- |
| 38.39 | 0.289 | 12.5 | -0.235 | 0.35 | 1.22 | -- | 0.0189 | -0.181 | 16.4 | 13.28 | 353 | -- | -- |
| 38.39 | 0.289 | 12.5 | -0.234 | 0.348 | 1.23 | -- | -- | -0.183 | 16.4 | 13.26 | 353 | -- | -- |
| 42.79 | 0.305 | 12.5 | -0.295 | -- | 1.57 | -- | 0.12 | -0.232 | -- | 12.86 | 312 | -- | -- |
| 53.13 | 0.342 | 12.5 | 0.0313 | 0.686 | -- | 0.788 | -- | -0.00895 | 17.1 | -- | -- | -- | -- |
| 54.67 | 0.346 | 12.5 | 0.0328 | 0.691 | -- | -- | -- | -0.00499 | 16.9 | -- | -- | -- | -- |
| 42.8 | 0.305 | 12.5 | -0.316 | -- | 1.57 | -- | -- | -0.237 | -- | 13.06 | 309 | -- | -- |
| 39.68 | 0.293 | 12.5 | -- | 0.383 | 1.12 | -- | -- | -0.143 | 16.5 | 13.97 | 353 | -- | -- |
| 79.79 | 0.417 | 12.5 | 0.00741 | -- | -- | -- | -- | -0.0228 | -- | -- | -- | -- | -- |
| 54.7 | 0.346 | 12.5 | -- | 0.69 | -- | -- | -- | -0.00864 | 16.9 | -- | -- | -- | -- |
| 44.57 | 0.311 | 12.5 | -- | -- | 1.21 | -- | -- | -0.189 | -- | 18.7 | 304 | -- | -- |
| 79.79 | 0.417 | 12.5 | -- | -- | -- | -- | -- | -0.0236 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.49 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 5 | 35.96 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 20 |
| 9 | 36.08 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 20 |
| 15 | 36.32 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 18 |
| 60 | 37.37 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 67 | 37.46 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 88 | 37.74 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 97 | 37.91 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 101 | 37.97 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 107 | 38.04 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 180 | 38.71 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 188 | 38.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 190 | 38.76 | temperature | 15 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 335 | 39.41 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 372 | 39.53 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 379 | 39.55 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 17 |
| 400 | 39.63 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 421 | 39.70 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 11 |
| 449 | 39.75 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 9 |
| 450 | 39.75 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 9 |
| 486 | 39.80 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 2 |
| 534 | 39.83 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 4 |
| 638 | 39.92 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 17 |
| 639 | 39.92 | temperature | 30 | 1440 | < th | dose dependent | sin | 11 | NA |
| 670 | 39.95 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 745 | 40.00 | temperature | 15 | 10 | > th | dose dependent | rect. | 12 | 17 |
| 778 | 40.03 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 895 | 40.11 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |