Os05g0155000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein MFP-b.
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Os05g0155000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein MFP-b.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.13 | 0.367 | 3.97 | -7.17 | 1.08 | -790 | -0.715 | -1660 | 0.139 | 1.13 | 15 | 90 | -- | -- |
| 70.12 | 0.393 | 8.08 | 1.37 | 1.04 | -1.58 | -0.456 | -- | 0.116 | 1.15 | 15 | 90 | -- | -- |
| 64.2 | 0.373 | 3.97 | -7.12 | 1.08 | -790 | -- | -1670 | 0.148 | 1.08 | 15.01 | 87 | -- | -- |
| 70.96 | 0.395 | 8.07 | 1.39 | 1.04 | -1.47 | -- | -- | 0.119 | 1.12 | 15 | 90 | -- | -- |
| 135.26 | 0.542 | 4 | -6.93 | -- | -790 | -- | -1670 | 0.201 | -- | 14.98 | 90 | -- | -- |
| 74.82 | 0.406 | 8.07 | 1.44 | 1.02 | -- | -0.27 | -- | 0.132 | 1.17 | -- | -- | -- | -- |
| 75.12 | 0.406 | 8.07 | 1.45 | 1.02 | -- | -- | -- | 0.134 | 1.15 | -- | -- | -- | -- |
| 137.52 | 0.549 | 8.06 | 1.45 | -- | -0.921 | -- | -- | 0.145 | -- | 15 | 90 | -- | -- |
| 121.03 | 0.515 | 8.11 | -- | 1.08 | -2.18 | -- | -- | -0.0399 | 1.16 | 15 | 90 | -- | -- |
| 139.17 | 0.551 | 8.05 | 1.49 | -- | -- | -- | -- | 0.154 | -- | -- | -- | -- | -- |
| 130.41 | 0.534 | 8.11 | -- | 1.04 | -- | -- | -- | -0.0273 | 1.21 | -- | -- | -- | -- |
| 163.73 | 0.596 | 8.14 | -- | -- | -1.35 | -- | -- | -0.269 | -- | 29.79 | 984 | -- | -- |
| 197.53 | 0.656 | 8.09 | -- | -- | -- | -- | -- | -0.0106 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.50 | temperature | 25 | 90 | < th | dose dependent | rect. | 4 | 13 |
| 8 | 62.13 | temperature | 15 | 90 | > th | dose independent | no | NA | NA |
| 10 | 62.13 | temperature | 15 | 90 | < th | dose independent | sin | 7 | NA |
| 58 | 62.13 | temperature | 15 | 90 | < th | dose independent | no | NA | NA |
| 60 | 62.13 | temperature | 15 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 62 | 62.13 | temperature | 15 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 65 | 62.13 | atmosphere | 1015 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 196 | 62.13 | temperature | 15 | 270 | < th | dose independent | rect. | 24 | 10 |
| 645 | 62.13 | temperature | 15 | 90 | < th | dose dependent | sin | 7 | NA |
| 693 | 62.13 | temperature | 15 | 90 | < th | dose dependent | no | NA | NA |
| 695 | 62.13 | temperature | 15 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 697 | 62.13 | temperature | 15 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 700 | 62.13 | atmosphere | 1015 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 831 | 62.13 | temperature | 15 | 270 | < th | dose dependent | rect. | 24 | 10 |