Os01g0662700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Naphthoate synthase (EC 4.1.3.36).
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Os01g0662700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Naphthoate synthase (EC 4.1.3.36).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.02 | 0.443 | 13.1 | 0.298 | 2.11 | -0.774 | -0.728 | 0.996 | -0.199 | 22.5 | 20.1 | 693 | -- | -- |
| 90.73 | 0.444 | 13.1 | 0.33 | 2.1 | -1.12 | -0.478 | -- | -0.201 | 22.6 | 19.3 | 2183 | -- | -- |
| 90.65 | 0.443 | 13.1 | 0.254 | 2.1 | -0.765 | -- | 0.754 | -0.219 | 22.5 | 20.3 | 551 | -- | -- |
| 91.27 | 0.445 | 13.1 | 0.35 | 2.07 | -1.13 | -- | -- | -0.192 | 22.6 | 19.14 | 2164 | -- | -- |
| 308.64 | 0.823 | 13 | 0.257 | -- | -1.02 | -- | 0.671 | -0.186 | -- | 20.3 | 551 | -- | -- |
| 112.48 | 0.497 | 13.1 | -0.181 | 2 | -- | -0.443 | -- | -0.416 | 22.6 | -- | -- | -- | -- |
| 113.29 | 0.498 | 13.1 | -0.164 | 2 | -- | -- | -- | -0.415 | 22.6 | -- | -- | -- | -- |
| 311.01 | 0.825 | 13 | 0.139 | -- | -1.05 | -- | -- | -0.212 | -- | 20.3 | 551 | -- | -- |
| 93.69 | 0.451 | 13.1 | -- | 2.06 | -0.946 | -- | -- | -0.252 | 22.6 | 19.13 | 2076 | -- | -- |
| 360.66 | 0.887 | 13.1 | -0.126 | -- | -- | -- | -- | -0.405 | -- | -- | -- | -- | -- |
| 114 | 0.499 | 13.1 | -- | 2 | -- | -- | -- | -0.397 | 22.6 | -- | -- | -- | -- |
| 311.5 | 0.825 | 13 | -- | -- | -1.03 | -- | -- | -0.231 | -- | 20.3 | 551 | -- | -- |
| 361.08 | 0.887 | 13.1 | -- | -- | -- | -- | -- | -0.391 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 82.18 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 2 | 82.51 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 5 | 83.05 | humidity | 70 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 15 | 83.43 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 16 | 83.54 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 17 | 83.54 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 18 | 83.58 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 20 | 83.66 | humidity | 90 | 14400 | > th | dose dependent | rect. | 7 | 6 |
| 25 | 83.82 | humidity | 90 | 14400 | > th | dose dependent | rect. | 7 | 9 |
| 28 | 83.86 | humidity | 90 | 14400 | > th | dose dependent | rect. | 7 | 13 |
| 52 | 84.58 | humidity | 90 | 14400 | > th | dose dependent | sin | 22 | NA |
| 60 | 84.78 | humidity | 90 | 14400 | > th | dose independent | rect. | 7 | 16 |
| 94 | 85.14 | wind | 3 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 99 | 85.22 | humidity | 90 | 14400 | > th | dose independent | rect. | 7 | 7 |
| 100 | 85.23 | humidity | 70 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 116 | 85.34 | humidity | 90 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 130 | 85.50 | humidity | 80 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 137 | 85.55 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 20 |
| 139 | 85.58 | humidity | 60 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 142 | 85.60 | humidity | 60 | 14400 | > th | dose independent | rect. | 1 | 7 |
| 165 | 85.73 | humidity | 90 | 14400 | > th | dose independent | sin | 22 | NA |
| 169 | 85.74 | wind | 1 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 180 | 85.81 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 5 |
| 183 | 85.84 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 186 | 85.86 | humidity | 90 | 14400 | < th | dose independent | rect. | 7 | 8 |
| 190 | 85.88 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 16 |
| 199 | 85.91 | humidity | 90 | 14400 | < th | dose independent | rect. | 7 | 14 |
| 277 | 86.23 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 280 | 86.23 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 18 |
| 282 | 86.23 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 310 | 86.36 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 18 |
| 313 | 86.37 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 7 |
| 323 | 86.40 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 20 |
| 362 | 86.53 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 7 |
| 375 | 86.58 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 391 | 86.65 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 404 | 86.69 | humidity | 90 | 14400 | < th | dose independent | sin | 22 | NA |
| 412 | 86.70 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 2 |
| 441 | 86.78 | wind | 1 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 443 | 86.78 | humidity | 70 | 14400 | < th | dose dependent | rect. | 20 | 11 |
| 447 | 86.79 | wind | 1 | 14400 | > th | dose dependent | rect. | 23 | 6 |
| 448 | 86.79 | wind | 9 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 454 | 86.82 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 18 |
| 508 | 86.97 | wind | 7 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 573 | 87.13 | humidity | 90 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 588 | 87.16 | radiation | 10 | 4320 | < th | dose dependent | rect. | 3 | 2 |
| 654 | 87.29 | temperature | 20 | 720 | > th | dose independent | sin | 9 | NA |
| 669 | 87.33 | humidity | 80 | 14400 | > th | dose dependent | rect. | 12 | 2 |
| 684 | 87.37 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 687 | 87.37 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 756 | 87.52 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 3 |
| 759 | 87.53 | humidity | 70 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 780 | 87.58 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 799 | 87.63 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 801 | 87.65 | wind | 7 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 804 | 87.65 | wind | 3 | 43200 | < th | dose dependent | rect. | 1 | 7 |
| 864 | 87.78 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 988 | 88.06 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |