Os02g0654100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Enoyl-CoA hydratase.
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Os02g0654100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Enoyl-CoA hydratase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.13 | 0.274 | 10.1 | -0.526 | 0.589 | -0.342 | -1.31 | -0.01 | -0.224 | 20.8 | 24.5 | 131 | -- | -- |
| 34.12 | 0.272 | 10.1 | -0.531 | 0.588 | -0.345 | -1.31 | -- | -0.225 | 20.8 | 24.5 | 135 | -- | -- |
| 39.75 | 0.294 | 10.1 | -0.45 | 0.602 | -0.309 | -- | -0.0823 | -0.198 | 20.5 | 24.59 | 133 | -- | -- |
| 39.77 | 0.294 | 10.1 | -0.475 | 0.599 | -0.315 | -- | -- | -0.208 | 20.5 | 24.56 | 141 | -- | -- |
| 54.43 | 0.344 | 10.1 | -0.796 | -- | -0.521 | -- | 0.827 | -0.333 | -- | 25.14 | 420 | -- | -- |
| 41.58 | 0.302 | 10 | -0.411 | 0.681 | -- | -1.2 | -- | -0.0352 | 19.9 | -- | -- | -- | -- |
| 45.53 | 0.316 | 10 | -0.375 | 0.691 | -- | -- | -- | -0.0347 | 19.5 | -- | -- | -- | -- |
| 55.58 | 0.347 | 10.1 | -0.522 | -- | -0.5 | -- | -- | -0.254 | -- | 25.27 | 394 | -- | -- |
| 45.57 | 0.314 | 10.1 | -- | 0.614 | -0.264 | -- | -- | -0.138 | 20.2 | 24.7 | 132 | -- | -- |
| 71.09 | 0.394 | 10 | -0.385 | -- | -- | -- | -- | -0.0455 | -- | -- | -- | -- | -- |
| 49.24 | 0.328 | 10 | -- | 0.694 | -- | -- | -- | 0.00709 | 19.5 | -- | -- | -- | -- |
| 62.43 | 0.368 | 10.1 | -- | -- | -0.428 | -- | -- | -0.17 | -- | 25.3 | 350 | -- | -- |
| 75.01 | 0.404 | 10 | -- | -- | -- | -- | -- | -0.00271 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.12 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 5 | 32.56 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 6 | 32.59 | temperature | 25 | 90 | < th | dose independent | sin | 5 | NA |
| 7 | 32.59 | temperature | 30 | 30 | < th | dose dependent | sin | 4 | NA |
| 9 | 32.66 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 6 |
| 12 | 32.76 | temperature | 10 | 10 | > th | dose dependent | sin | 2 | NA |
| 13 | 32.77 | temperature | 25 | 90 | > th | dose independent | rect. | 24 | 18 |
| 14 | 32.77 | temperature | 25 | 90 | > th | dose independent | rect. | 24 | 20 |
| 16 | 32.77 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 21 |
| 17 | 32.77 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 22 |
| 61 | 33.01 | temperature | 25 | 90 | > th | dose independent | sin | 4 | NA |
| 83 | 33.11 | temperature | 25 | 90 | < th | dose independent | rect. | 23 | 16 |
| 88 | 33.12 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 12 |
| 89 | 33.14 | temperature | 25 | 90 | < th | dose independent | rect. | 23 | 14 |
| 142 | 33.36 | temperature | 25 | 90 | > th | dose independent | rect. | 4 | 14 |
| 169 | 33.41 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 171 | 33.41 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 20 |
| 179 | 33.43 | temperature | 20 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 180 | 33.43 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 188 | 33.46 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 12 |
| 211 | 33.51 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 10 |
| 213 | 33.51 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 215 | 33.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 9 |
| 220 | 33.53 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 14 |
| 231 | 33.56 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 12 |
| 252 | 33.59 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 2 |
| 253 | 33.59 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 306 | 33.69 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 353 | 33.84 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 10 |
| 354 | 33.84 | temperature | 25 | 90 | < th | dose independent | rect. | 21 | 19 |
| 362 | 33.85 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 391 | 33.90 | temperature | 25 | 90 | < th | dose independent | rect. | 19 | 22 |
| 409 | 33.93 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 7 |
| 421 | 33.95 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 5 |
| 423 | 33.95 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 424 | 33.95 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 444 | 33.97 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 454 | 33.99 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 456 | 33.99 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 465 | 34.01 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 17 |
| 492 | 34.05 | temperature | 25 | 90 | < th | dose independent | rect. | 23 | 20 |
| 519 | 34.08 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 539 | 34.11 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 545 | 34.13 | temperature | 25 | 90 | > th | dose independent | rect. | 24 | 11 |
| 560 | 34.15 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 561 | 34.15 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 23 |
| 580 | 34.17 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 581 | 34.17 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 600 | 34.19 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 1 |
| 616 | 34.20 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 632 | 34.22 | temperature | 25 | 90 | < th | dose independent | rect. | 19 | 18 |
| 660 | 34.25 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 678 | 34.27 | temperature | 20 | 720 | > th | dose independent | sin | 5 | NA |
| 741 | 34.31 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 14 |
| 762 | 34.33 | temperature | 25 | 90 | < th | dose independent | rect. | 23 | 22 |
| 771 | 34.33 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 775 | 34.34 | temperature | 25 | 90 | > th | dose independent | rect. | 12 | 23 |
| 845 | 34.41 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 4 |
| 885 | 34.44 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 11 |
| 896 | 34.45 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 13 |
| 937 | 34.48 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 1 |
| 974 | 34.52 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 10 | 3 |