BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0646700 Os01g0646700|AK101336
(162 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0646700 Conserved hypothetical protein 265 8e-72
Os02g0480100 Similar to Helicase-like protein [Oryza sativa... 253 5e-68
Os10g0192300 Protein of unknown function DUF889, eukaryote ... 200 5e-52
Os10g0186600 199 5e-52
Os07g0438100 181 2e-46
Os02g0463700 Similar to Helicase-like protein [Oryza sativa... 162 1e-40
Os01g0632900 135 9e-33
Os02g0701833 Protein of unknown function DUF889, eukaryote ... 132 1e-31
Os08g0112000 Protein of unknown function DUF889, eukaryote ... 74 3e-14
Os05g0523000 68 3e-12
Os11g0630100 67 4e-12
Os11g0595800 67 4e-12
Os11g0671400 67 4e-12
>Os01g0646700 Conserved hypothetical protein
Length = 162
Score = 265 bits (678), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 127/151 (84%), Positives = 127/151 (84%)
Query: 12 EYYMFAGLGXXXXXXXXXXXXXXXXXXXXXXXXPYDYMYSNIPQSTNVLKPEPDCKHCGA 71
EYYMFAGLG PYDYMYSNIPQSTNVLKPEPDCKHCGA
Sbjct: 12 EYYMFAGLGDDEDDEMVQSDDDDTQSPTSSVPDPYDYMYSNIPQSTNVLKPEPDCKHCGA 71
Query: 72 KRFQYEPPSFCCRGGKIKLVQNETPPELMRLWTSSDPDAKHFRDNNRYFNGHFSFTTLGV 131
KRFQYEPPSFCCRGGKIKLVQNETPPELMRLWTSSDPDAKHFRDNNRYFNGHFSFTTLGV
Sbjct: 72 KRFQYEPPSFCCRGGKIKLVQNETPPELMRLWTSSDPDAKHFRDNNRYFNGHFSFTTLGV 131
Query: 132 SLDKAFANMSSGVYTFRAHGQIYHNIHSFSP 162
SLDKAFANMSSGVYTFRAHGQIYHNIHSFSP
Sbjct: 132 SLDKAFANMSSGVYTFRAHGQIYHNIHSFSP 162
>Os02g0480100 Similar to Helicase-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 1466
Score = 253 bits (645), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 120/151 (79%), Positives = 122/151 (80%)
Query: 12 EYYMFAGLGXXXXXXXXXXXXXXXXXXXXXXXXPYDYMYSNIPQSTNVLKPEPDCKHCGA 71
EYYMF GLG P+DY+YSNIPQSTNVLKPEPDCKHCGA
Sbjct: 274 EYYMFVGLGDDEDDDMVQSDDDDTQSPTSSVPDPFDYVYSNIPQSTNVLKPEPDCKHCGA 333
Query: 72 KRFQYEPPSFCCRGGKIKLVQNETPPELMRLWTSSDPDAKHFRDNNRYFNGHFSFTTLGV 131
KRFQYEPPSFCCR GKI LVQNETPPELMRLWTSSDPDAKHFRDN RYFNGHFSFTTLGV
Sbjct: 334 KRFQYEPPSFCCRDGKINLVQNETPPELMRLWTSSDPDAKHFRDNIRYFNGHFSFTTLGV 393
Query: 132 SLDKAFANMSSGVYTFRAHGQIYHNIHSFSP 162
SLDKAFANMSSGVYTFRAHGQI HNIHSFSP
Sbjct: 394 SLDKAFANMSSGVYTFRAHGQICHNIHSFSP 424
>Os10g0192300 Protein of unknown function DUF889, eukaryote family protein
Length = 1575
Score = 200 bits (508), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 90/116 (77%), Positives = 101/116 (87%)
Query: 45 PYDYMYSNIPQSTNVLKPEPDCKHCGAKRFQYEPPSFCCRGGKIKLVQNETPPELMRLWT 104
PYD++YSNIP++T+VLKP +CKHCGAK+FQYE FCCRGGKIKL ETPPELMRLW+
Sbjct: 218 PYDHVYSNIPRNTHVLKPTANCKHCGAKKFQYETNGFCCRGGKIKLSNLETPPELMRLWS 277
Query: 105 SSDPDAKHFRDNNRYFNGHFSFTTLGVSLDKAFANMSSGVYTFRAHGQIYHNIHSF 160
S D DA HFRDN R+FNGHFSFTTLGVSLD+ + NM SGVYTFRAHGQIYHNIHSF
Sbjct: 278 SMDSDATHFRDNIRFFNGHFSFTTLGVSLDERYTNMRSGVYTFRAHGQIYHNIHSF 333
>Os10g0186600
Length = 1638
Score = 199 bits (507), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 90/116 (77%), Positives = 101/116 (87%)
Query: 45 PYDYMYSNIPQSTNVLKPEPDCKHCGAKRFQYEPPSFCCRGGKIKLVQNETPPELMRLWT 104
PYD++YSNIP++T+VLKP +CKHCGAK+FQYE FCCRGGKIKL ETPPELMRLW+
Sbjct: 240 PYDHVYSNIPRNTHVLKPTANCKHCGAKKFQYETNGFCCRGGKIKLSNLETPPELMRLWS 299
Query: 105 SSDPDAKHFRDNNRYFNGHFSFTTLGVSLDKAFANMSSGVYTFRAHGQIYHNIHSF 160
S D DA HFRDN R+FNGHFSFTTLGVSLD+ + NM SGVYTFRAHGQIYHNIHSF
Sbjct: 300 SMDSDATHFRDNIRFFNGHFSFTTLGVSLDERYTNMRSGVYTFRAHGQIYHNIHSF 355
>Os07g0438100
Length = 576
Score = 181 bits (460), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 90/126 (71%), Positives = 94/126 (74%), Gaps = 1/126 (0%)
Query: 12 EYYMFAGLGXXXXXXXXXXXXXXXXXXXXXXXXPYDYMYSNIPQSTNVLKPEPDCKHCGA 71
EYYMFAGLG P+DY+YSNIPQSTNVLKPEPDCKHCGA
Sbjct: 146 EYYMFAGLGDGEDDEMVQSDDDTQSPNSSVLD-PFDYVYSNIPQSTNVLKPEPDCKHCGA 204
Query: 72 KRFQYEPPSFCCRGGKIKLVQNETPPELMRLWTSSDPDAKHFRDNNRYFNGHFSFTTLGV 131
KRFQYEPPSFC R GKIKLVQNETP ELMRLWTSSDPDAKHFRDN RYFNGHFSFTTLG
Sbjct: 205 KRFQYEPPSFCFRDGKIKLVQNETPLELMRLWTSSDPDAKHFRDNIRYFNGHFSFTTLGG 264
Query: 132 SLDKAF 137
+ + F
Sbjct: 265 NERRKF 270
>Os02g0463700 Similar to Helicase-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 1221
Score = 162 bits (410), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 71/115 (61%), Positives = 95/115 (82%), Gaps = 1/115 (0%)
Query: 47 DYMYSNIPQSTNVLKPEPDCKHCGAKRFQYEPPSFCCRGGKIKLVQNETPPELMRLWTSS 106
+ +YSNIPQST++L+P +C+ C AK+F++EP FCCR G+I+L +TPPELMRLWTS+
Sbjct: 236 ELVYSNIPQSTHMLEPVKNCEFCDAKKFEHEPKGFCCRSGQIRLANQDTPPELMRLWTSN 295
Query: 107 DPDAKHFRDNNRYFNGHFSFTTLGVSLDKAFANM-SSGVYTFRAHGQIYHNIHSF 160
D DA+HFR+N R+FNGHFSFT+L LD+ ++ +SG+YTFRAHGQ+YHNIHSF
Sbjct: 296 DSDAQHFRNNIRFFNGHFSFTSLYCHLDRETTDIRNSGIYTFRAHGQMYHNIHSF 350
>Os01g0632900
Length = 2198
Score = 135 bits (341), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 65/120 (54%), Positives = 85/120 (70%), Gaps = 2/120 (1%)
Query: 45 PYDYMYSNIPQSTNVLKPEPDCKHCGAKRFQYEPPSFCCRGGKIKLVQNETPPELMRLWT 104
PYDY+Y N+P+ +VLK +CK+CGA RFQYEPP FCCR GKI + P EL+RL+T
Sbjct: 311 PYDYVYHNLPKKHHVLKKVANCKYCGAIRFQYEPPGFCCRQGKITVATPLVPLELVRLFT 370
Query: 105 SS-DPDAKHFRDNNRYFNGHFSFTTLGVSLDKAFANMS-SGVYTFRAHGQIYHNIHSFSP 162
S D DA +FR + RYFN HFSFT+LGV+LD + + +GVYTF+ HG +YH + + P
Sbjct: 371 SQVDNDANYFRKHIRYFNSHFSFTSLGVTLDHNVSTAAGTGVYTFQVHGALYHRLDNLVP 430
>Os02g0701833 Protein of unknown function DUF889, eukaryote family protein
Length = 1582
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/120 (52%), Positives = 84/120 (70%), Gaps = 2/120 (1%)
Query: 45 PYDYMYSNIPQSTNVLKPEPDCKHCGAKRFQYEPPSFCCRGGKIKLVQNETPPELMRLWT 104
P+D +Y +P++ +VLK PDCKHC A RFQ+E P FCCR GKI + P EL+RL+T
Sbjct: 310 PHDRVYHKLPKTHHVLKKVPDCKHCQAIRFQFESPGFCCREGKINVKIPTVPDELIRLFT 369
Query: 105 SS-DPDAKHFRDNNRYFNGHFSFTTLGVSLDKAFANMS-SGVYTFRAHGQIYHNIHSFSP 162
S DAK+FR + RYFN HFSFT+LGV+LD+ + + +GVYTFR HG +YH + + P
Sbjct: 370 SQVHNDAKYFRKHIRYFNSHFSFTSLGVTLDQRVSTAAGTGVYTFRVHGALYHRLDNLVP 429
>Os08g0112000 Protein of unknown function DUF889, eukaryote family protein
Length = 1481
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 39/68 (57%)
Query: 12 EYYMFAGLGXXXXXXXXXXXXXXXXXXXXXXXXPYDYMYSNIPQSTNVLKPEPDCKHCGA 71
EYY+FA LG P+D +YSNIPQSTNVLKPEPDCKHCGA
Sbjct: 340 EYYLFARLGDDEDDDMVQSDDDDTQAPTSSIPDPFDCVYSNIPQSTNVLKPEPDCKHCGA 399
Query: 72 KRFQYEPP 79
KRFQ P
Sbjct: 400 KRFQESSP 407
>Os05g0523000
Length = 1634
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 60/115 (52%), Gaps = 15/115 (13%)
Query: 61 KPEPDCKHCGAKRFQYE---------PPSF--CCRGGKIKLVQNETPPELMR--LWTSSD 107
KP C+HCGA F YE PPSF CC+ GK+ L + PP + +
Sbjct: 239 KPTCTCQHCGA-LFWYEERTRGKGKGPPSFSLCCKQGKVDLPTLKKPPTYLSNLMCKEKG 297
Query: 108 PDAKHFRDNNRYFNGHFSFTTLGVSLDKAFANMSSGVYTFRAHGQIYHNIHSFSP 162
++++ DN R +N F+FT++G +D+ N SG Y FR +GQ YH I + P
Sbjct: 298 KRSRNYMDNIRVYNSMFAFTSMGGKVDREINN-GSGPYVFRMNGQNYHRISTLLP 351
>Os11g0630100
Length = 1682
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 60/115 (52%), Gaps = 15/115 (13%)
Query: 61 KPEPDCKHCGAKRFQYE---------PPSF--CCRGGKIKLVQNETPPELMR--LWTSSD 107
KP C+HCGA F YE PPSF CC+ GK+ L + PP + +
Sbjct: 287 KPTCTCQHCGA-LFWYEERTRGKGKGPPSFSLCCKQGKVDLPTLKKPPTYLSNLMCKEKG 345
Query: 108 PDAKHFRDNNRYFNGHFSFTTLGVSLDKAFANMSSGVYTFRAHGQIYHNIHSFSP 162
++++ DN R +N F+FT++G +D+ N SG Y FR +GQ YH I + P
Sbjct: 346 KRSRNYMDNIRVYNSMFAFTSMGGKVDREINN-GSGPYVFRMNGQNYHRIGTLLP 399
>Os11g0595800
Length = 1618
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 60/115 (52%), Gaps = 15/115 (13%)
Query: 61 KPEPDCKHCGAKRFQYE---------PPSF--CCRGGKIKLVQNETPPELMR--LWTSSD 107
KP C+HCGA F YE PPSF CC+ GK+ L + PP + +
Sbjct: 287 KPTCTCQHCGA-LFWYEERTRGKGKGPPSFSLCCKQGKVDLPTLKKPPTYLSNLMCKEKG 345
Query: 108 PDAKHFRDNNRYFNGHFSFTTLGVSLDKAFANMSSGVYTFRAHGQIYHNIHSFSP 162
++++ DN R +N F+FT++G +D+ N SG Y FR +GQ YH I + P
Sbjct: 346 KRSRNYMDNIRVYNSMFAFTSMGGKVDREINN-GSGPYVFRMNGQNYHRIGTLLP 399
>Os11g0671400
Length = 1682
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 60/115 (52%), Gaps = 15/115 (13%)
Query: 61 KPEPDCKHCGAKRFQYE---------PPSF--CCRGGKIKLVQNETPPELMR--LWTSSD 107
KP C+HCGA F YE PPSF CC+ GK+ L + PP + +
Sbjct: 287 KPTCTCQHCGA-LFWYEERTRGKGKGPPSFSLCCKQGKVDLPTLKKPPTYLSNLMCKEKG 345
Query: 108 PDAKHFRDNNRYFNGHFSFTTLGVSLDKAFANMSSGVYTFRAHGQIYHNIHSFSP 162
++++ DN R +N F+FT++G +D+ N SG Y FR +GQ YH I + P
Sbjct: 346 KRSRNYMDNIRVYNSMFAFTSMGGKVDREINN-GSGPYVFRMNGQNYHRIGTLLP 399
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.138 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,128,036
Number of extensions: 209114
Number of successful extensions: 372
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 368
Number of HSP's successfully gapped: 13
Length of query: 162
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 69
Effective length of database: 12,179,899
Effective search space: 840413031
Effective search space used: 840413031
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)