Os02g0480100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Helicase-like protein [Oryza sativa (japonica cultivar-group)].
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Os02g0480100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Helicase-like protein [Oryza sativa (japonica cultivar-group)].
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 69.66 | 0.392 | 7.02 | 0.0573 | 0.672 | -1.79 | -0.245 | -3.83 | 0.613 | 4.14 | 20.88 | 6152 | -- | -- |
| 74.45 | 0.405 | 7.11 | 0.149 | 0.711 | -0.365 | -0.227 | -- | 0.641 | 3.9 | 22.38 | 4826 | -- | -- |
| 69.76 | 0.389 | 7 | 0.0585 | 0.668 | -2.1 | -- | -4.51 | 0.62 | 4.13 | 20.2 | 6133 | -- | -- |
| 74.26 | 0.401 | 7.12 | 0.0485 | 0.674 | -0.361 | -- | -- | 0.595 | 4.12 | 23.67 | 6121 | -- | -- |
| 93.93 | 0.451 | 7.01 | 0.0582 | -- | -2.1 | -- | -4.44 | 0.633 | -- | 20.21 | 5719 | -- | -- |
| 75.92 | 0.408 | 7.1 | 0.218 | 0.677 | -- | -0.237 | -- | 0.682 | 4.1 | -- | -- | -- | -- |
| 76.08 | 0.408 | 7.1 | 0.22 | 0.675 | -- | -- | -- | 0.684 | 4.08 | -- | -- | -- | -- |
| 93.14 | 0.451 | 7.08 | 0.381 | -- | 0.732 | -- | -- | 0.799 | -- | 34.82 | 1200 | -- | -- |
| 74.24 | 0.401 | 7.12 | -- | 0.673 | -0.409 | -- | -- | 0.587 | 4.09 | 23.2 | 6091 | -- | -- |
| 100.88 | 0.469 | 7.1 | 0.248 | -- | -- | -- | -- | 0.702 | -- | -- | -- | -- | -- |
| 77.36 | 0.411 | 7.1 | -- | 0.679 | -- | -- | -- | 0.659 | 4.07 | -- | -- | -- | -- |
| 96.75 | 0.46 | 7.09 | -- | -- | 0.613 | -- | -- | 0.743 | -- | 52.36 | 2669 | -- | -- |
| 102.5 | 0.473 | 7.11 | -- | -- | -- | -- | -- | 0.674 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.24 | wind | 5.0 | 4320 | < th | dose independent | rect. | 24 | 2 |
| 2 | 66.29 | wind | 5.0 | 4320 | > th | dose independent | rect. | 24 | 2 |
| 6 | 66.61 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 9 | 66.63 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 23 | 4 |
| 53 | 67.81 | wind | 7.0 | 1440 | > th | dose dependent | rect. | 24 | 9 |
| 55 | 67.84 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 1 | 3 |
| 67 | 68.01 | wind | 7.0 | 1440 | > th | dose independent | rect. | 24 | 8 |
| 72 | 68.05 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 6 |
| 95 | 68.20 | wind | 7.0 | 1440 | < th | dose independent | rect. | 23 | 9 |
| 101 | 68.23 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 130 | 68.35 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 21 | 2 |
| 152 | 68.45 | wind | 1.0 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 160 | 68.50 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 174 | 68.59 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 3 |
| 206 | 68.71 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 6 |
| 235 | 68.84 | wind | 1.0 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 363 | 69.29 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 370 | 69.31 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 371 | 69.31 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 3 |
| 374 | 69.32 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 382 | 69.32 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 21 | 10 |
| 391 | 69.34 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 22 | 9 |
| 397 | 69.37 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 403 | 69.38 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 406 | 69.39 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 412 | 69.40 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 470 | 69.52 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 496 | 69.56 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 21 | 4 |
| 500 | 69.56 | humidity | 80.0 | 10 | > th | dose independent | rect. | 4 | 16 |
| 501 | 69.56 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 21 | 4 |
| 558 | 69.64 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 20 | 16 |
| 559 | 69.64 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 577 | 69.66 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 21 | 15 |
| 580 | 69.66 | wind | 1.0 | 14400 | < th | dose dependent | sin | 7 | NA |
| 583 | 69.66 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 8 | 3 |
| 598 | 69.68 | wind | 1.0 | 14400 | < th | dose independent | sin | 8 | NA |
| 629 | 69.69 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 669 | 69.71 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 671 | 69.71 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 4 | 7 |
| 696 | 69.72 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 3 | 4 |
| 745 | 69.74 | wind | 1.0 | 14400 | < th | dose independent | rect. | 16 | 17 |
| 757 | 69.75 | atmosphere | 1015.0 | 43200 | < th | dose independent | sin | 9 | NA |
| 814 | 69.77 | atmosphere | 1015.0 | 43200 | > th | dose independent | sin | 8 | NA |
| 852 | 69.77 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 5 | 13 |
| 959 | 69.81 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 16 | 17 |
| 974 | 69.82 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 8 | 16 |
| 975 | 69.82 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 8 | 18 |
| 986 | 69.83 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 5 | 1 |