BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0480100 Os02g0480100|Os02g0480100
(1466 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G28780.1 | chr5:10812907-10814173 REVERSE LENGTH=338 168 2e-41
AT3G51700.1 | chr3:19179443-19181145 REVERSE LENGTH=345 146 9e-35
AT3G51690.1 | chr3:19176731-19178107 REVERSE LENGTH=332 140 7e-33
>AT5G28780.1 | chr5:10812907-10814173 REVERSE LENGTH=338
Length = 337
Score = 168 bits (426), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/242 (40%), Positives = 140/242 (57%), Gaps = 12/242 (4%)
Query: 1214 VGNG---TEEVNKEGLIGLPSDICVSCKGNETDLERLIDTVFPNLNDNLTDPNYITCRAI 1270
VGNG T E + ++ + + + GN L+++ + + + + Y+T R I
Sbjct: 63 VGNGNAPTCETDDGEVVEMDTSFFLKHNGNR--LQQVTKGAYVQFSVSQPNFQYLTERGI 120
Query: 1271 LSTRNEFVDRINMKMIERFRGDVMTY---HSFDRADDDPHNY---YPPEFLNSLTPNGLP 1324
L+ NE+VD IN M+ + GD Y +S +AD +Y Y ++LNSL LP
Sbjct: 121 LTPHNEYVDEINAYMLSQVGGDSKEYLSSYSIGKADTIGADYEALYHVKYLNSLEFPSLP 180
Query: 1325 PHVLKLKINCPIMLLRNIDPANGLCNGTRLVVRQFGKNAIDAEIVVGQHAGKRVFLPRIP 1384
H + LK PIM +RN + GLCNGTRL+V G+ I+A+IV G HAGK V +PR
Sbjct: 181 KHKISLKKGVPIMQMRNFNQKEGLCNGTRLIVTNLGEQVIEAQIVTGTHAGKMVSIPRFI 240
Query: 1385 LCPSDDEMFPFRFKRKQFLVRLSFALTINKAQGQTIPNAGVYLPEPVFSHGQLYVALSRA 1444
L P E PF +R+QF +R+ +A+TI K QGQ++ + +YLP PVFSH QLYVALSR
Sbjct: 241 LSPPQSE-HPFTLRRQQFPMRVCYAMTIIKNQGQSLKSDVLYLPNPVFSHVQLYVALSRV 299
Query: 1445 TS 1446
TS
Sbjct: 300 TS 301
>AT3G51700.1 | chr3:19179443-19181145 REVERSE LENGTH=345
Length = 344
Score = 146 bits (368), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 144/263 (54%), Gaps = 20/263 (7%)
Query: 1204 DAWFADYLLRVGNGTEEVNK----EGLIGLPSDICVS-CKGNETDLERLIDTVFPNLNDN 1258
D F ++ +G E +NK E I + D+ ++ CK ++ ++D V+
Sbjct: 57 DEAFTKWITNIGG--ENINKPNDGETKIDIHEDLLITECKD---PIKTIVDEVYGESFTE 111
Query: 1259 LTDPNYITCRAILSTRNEFVDRINMKMIERFRGDVMTYHSFD-----RADDDPHNYYPPE 1313
+P++ RAIL N+ D IN M+ + +G+ + D A + YP E
Sbjct: 112 SYNPDFYQERAILCHTNDVADEINDYMLSQLQGEETKCYGADTIYPTHASPNDKMLYPLE 171
Query: 1314 FLNSLTPNGLPPHVLKLKINCPIMLLRNIDPANGLCNGTRLVVRQFGKNAIDAEIVVGQH 1373
FLNS+ G P L+LK+ P+MLLR++ P L GTRL + + ++A I+ G +
Sbjct: 172 FLNSIKIPGFPDFKLRLKVGAPVMLLRDLAPYGWLRKGTRLQITRVETFVLEAMIITGNN 231
Query: 1374 AGKRVFLPRIPLCPSD--DEMFPFRFKRKQFLVRLSFALTINKAQGQTIPNAGVYLPEPV 1431
G++V +PRI PSD + FP + +R+QF V+L+FA+TI+++Q QT+ G+YLP +
Sbjct: 232 HGEKVLIPRI---PSDLREAKFPIKMRRRQFPVKLAFAMTIDESQRQTLSKVGIYLPRQL 288
Query: 1432 FSHGQLYVALSRATSRSNIKNTI 1454
HGQ YVA+S+ SR+ +K I
Sbjct: 289 LFHGQRYVAISKVKSRAGLKVLI 311
>AT3G51690.1 | chr3:19176731-19178107 REVERSE LENGTH=332
Length = 331
Score = 140 bits (352), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 127/212 (59%), Gaps = 7/212 (3%)
Query: 1261 DPNYITCRAILSTRNEFVDRINMKMIERFRGDVMTYHSFDRADDDPHN--YYPPEFLNSL 1318
+P++ AIL R++ VD+IN M+ G+ S D P++ + P E LNS+
Sbjct: 113 NPDFCHDSAILCHRDDDVDQINDYMLSLLPGEEKECLSTDSISPSPNDDMFVPLEVLNSI 172
Query: 1319 TPNGLPPHVLKLKINCPIMLLRNIDPANGLCNGTRLVVRQFGKNAIDAEIVVGQHAGKRV 1378
GLP L+LK+ P+MLLR++DP+ G GTRL + + ++A I+ G GK++
Sbjct: 173 KVPGLPDFKLRLKVGAPVMLLRDLDPSRGFFTGTRLQITRLCGFLLEAMIIAGNKHGKKI 232
Query: 1379 FLPRIPLCPSDDEMFPFRFKRKQFLVRLSFALTINKAQGQTIPNAGVYLPEPVFSHG-QL 1437
++PRI P++ FP + +R Q+ ++L+FA+TI+++Q T+ G+YLP VFSHG Q+
Sbjct: 233 WIPRIASYPTETN-FPLQMRRTQYPLKLAFAMTIDESQVHTLSKVGLYLPRQVFSHGRQM 291
Query: 1438 YVALSRATSRSNIKNTI---DACRRQETKEKV 1466
+VA+S+ SR+ +K I D ++E K V
Sbjct: 292 FVAISKVKSRAGLKVLITDKDGNPQEEAKNVV 323
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 32,440,676
Number of extensions: 1444593
Number of successful extensions: 3269
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3263
Number of HSP's successfully gapped: 3
Length of query: 1466
Length of database: 11,106,569
Length adjustment: 111
Effective length of query: 1355
Effective length of database: 8,063,393
Effective search space: 10925897515
Effective search space used: 10925897515
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 118 (50.1 bits)