Os02g0463700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Helicase-like protein [Oryza sativa (japonica cultivar-group)].
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Os02g0463700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Helicase-like protein [Oryza sativa (japonica cultivar-group)].
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 156.76 | 0.588 | 2.98 | -0.00134 | 0.145 | 4.5 | -0.26 | 10.2 | 0.0199 | 9.13 | 9.9 | 249 | -- | -- |
| 161.99 | 0.593 | 2.94 | 0.00442 | 0.134 | 3.07 | -0.591 | -- | 0.153 | 6.97 | 10.2 | 186 | -- | -- |
| 156.64 | 0.583 | 2.98 | -0.0293 | 0.14 | 4.82 | -- | 10.9 | 0.0151 | 9.19 | 10 | 225 | -- | -- |
| 159.18 | 0.588 | 2.94 | -0.08 | 0.098 | 2.16 | -- | -- | 0.037 | 6.95 | 10.2 | 224 | -- | -- |
| 157.86 | 0.585 | 2.98 | -0.0183 | -- | 4.83 | -- | 11 | 0.0175 | -- | 10 | 224 | -- | -- |
| 167.58 | 0.607 | 2.95 | -0.189 | 0.12 | -- | -0.153 | -- | -0.00891 | 11.1 | -- | -- | -- | -- |
| 167.68 | 0.606 | 2.95 | -0.195 | 0.121 | -- | -- | -- | -0.00959 | 10.9 | -- | -- | -- | -- |
| 159.82 | 0.589 | 2.95 | -0.0992 | -- | 2.16 | -- | -- | 0.0269 | -- | 10.19 | 224 | -- | -- |
| 159.06 | 0.587 | 2.94 | -- | 0.135 | 2.24 | -- | -- | 0.0209 | 8.99 | 10.18 | 225 | -- | -- |
| 168.59 | 0.607 | 2.95 | -0.198 | -- | -- | -- | -- | -0.0104 | -- | -- | -- | -- | -- |
| 168.68 | 0.608 | 2.95 | -- | 0.123 | -- | -- | -- | 0.0121 | 11 | -- | -- | -- | -- |
| 160.06 | 0.589 | 2.94 | -- | -- | 2.19 | -- | -- | 0.0373 | -- | 10.16 | 224 | -- | -- |
| 169.62 | 0.608 | 2.95 | -- | -- | -- | -- | -- | 0.0115 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 151.16 | humidity | 80 | 30 | < th | dose dependent | rect. | 20 | 12 |
| 3 | 151.25 | humidity | 70 | 10 | < th | dose dependent | rect. | 17 | 15 |
| 6 | 151.29 | humidity | 70 | 10 | < th | dose independent | rect. | 18 | 14 |
| 18 | 151.55 | radiation | 30 | 30 | > th | dose dependent | rect. | 7 | 2 |
| 101 | 151.61 | humidity | 80 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 103 | 151.62 | humidity | 80 | 90 | < th | dose dependent | rect. | 2 | 5 |
| 104 | 151.63 | radiation | 30 | 30 | > th | dose independent | rect. | 7 | 1 |
| 125 | 151.64 | humidity | 80 | 90 | < th | dose independent | rect. | 6 | 1 |
| 179 | 151.67 | humidity | 70 | 10 | < th | dose independent | rect. | 7 | 1 |
| 240 | 151.67 | humidity | 70 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 666 | 154.12 | wind | 9 | 10 | > th | dose dependent | rect. | 15 | 3 |
| 719 | 154.60 | wind | 9 | 30 | > th | dose independent | rect. | 17 | 3 |
| 726 | 154.64 | wind | 9 | 10 | > th | dose dependent | rect. | 17 | 3 |
| 781 | 154.87 | wind | 9 | 270 | > th | dose independent | rect. | 14 | 3 |
| 784 | 154.90 | wind | 9 | 10 | > th | dose independent | rect. | 17 | 1 |
| 785 | 154.90 | wind | 9 | 90 | > th | dose independent | rect. | 17 | 1 |
| 787 | 154.90 | wind | 9 | 90 | > th | dose dependent | rect. | 17 | 1 |
| 788 | 154.90 | wind | 9 | 270 | > th | dose dependent | rect. | 14 | 3 |
| 790 | 154.91 | wind | 9 | 270 | > th | dose dependent | rect. | 14 | 5 |
| 792 | 154.92 | wind | 9 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 828 | 154.97 | wind | 9 | 270 | > th | dose independent | rect. | 14 | 5 |
| 861 | 155.26 | wind | 9 | 10 | > th | dose dependent | sin | 14 | NA |
| 903 | 155.63 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 7 | 1 |
| 919 | 155.69 | wind | 9 | 270 | > th | dose dependent | rect. | 14 | 12 |
| 991 | 155.94 | wind | 9 | 270 | > th | dose independent | rect. | 14 | 12 |