Os08g0112000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF889, eukaryote family protein.
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Os08g0112000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF889, eukaryote family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.39 | 0.371 | 6.91 | 0.82 | 0.417 | -0.705 | 0.199 | 1.43 | 0.275 | 19 | 21.42 | 70 | -- | -- |
| 63.97 | 0.373 | 6.94 | 0.594 | 0.406 | -0.65 | 0.254 | -- | 0.211 | 19 | 18.8 | 75 | -- | -- |
| 62.48 | 0.368 | 6.91 | 0.825 | 0.417 | -0.718 | -- | 1.48 | 0.279 | 18.9 | 21.4 | 64 | -- | -- |
| 64.14 | 0.373 | 6.94 | 0.587 | 0.403 | -0.655 | -- | -- | 0.209 | 19.1 | 18.3 | 75 | -- | -- |
| 69.65 | 0.391 | 6.91 | 0.769 | -- | -0.587 | -- | 1.44 | 0.246 | -- | 21.4 | 64 | -- | -- |
| 70.09 | 0.392 | 6.96 | 0.443 | 0.356 | -- | 0.185 | -- | 0.0985 | 21.4 | -- | -- | -- | -- |
| 70.21 | 0.392 | 6.96 | 0.437 | 0.355 | -- | -- | -- | 0.0983 | 21.4 | -- | -- | -- | -- |
| 70.99 | 0.394 | 6.93 | 0.561 | -- | -0.676 | -- | -- | 0.187 | -- | 12.05 | 17 | -- | -- |
| 72.16 | 0.398 | 6.96 | -- | 0.35 | -0.427 | -- | -- | 0.111 | 19.7 | 21.6 | 58 | -- | -- |
| 77.59 | 0.412 | 6.95 | 0.439 | -- | -- | -- | -- | 0.0971 | -- | -- | -- | -- | -- |
| 75.24 | 0.406 | 6.98 | -- | 0.355 | -- | -- | -- | 0.0497 | 21.5 | -- | -- | -- | -- |
| 78.7 | 0.415 | 6.95 | -- | -- | -0.413 | -- | -- | 0.105 | -- | 19.7 | 7 | -- | -- |
| 82.66 | 0.424 | 6.97 | -- | -- | -- | -- | -- | 0.0484 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.49 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 5 | 22 |
| 10 | 62.08 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 12 | 62.17 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 13 | 62.19 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 1 | 21 |
| 26 | 62.38 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 27 | 62.41 | temperature | 25.0 | 30 | < th | dose independent | rect. | 5 | 21 |
| 28 | 62.41 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 31 | 62.43 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 22 | 22 |
| 36 | 62.49 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 13 | 22 |
| 49 | 62.67 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 53 | 62.70 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 6 | 16 |
| 54 | 62.70 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 6 | 23 |
| 58 | 62.73 | wind | 3.0 | 4320 | > th | dose independent | rect. | 1 | 1 |
| 65 | 62.78 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 66 | 62.79 | temperature | 20.0 | 90 | > th | dose dependent | no | NA | NA |
| 78 | 62.86 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 22 | 20 |
| 95 | 62.91 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 96 | 62.92 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 16 | 5 |
| 98 | 62.92 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 104 | 62.95 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 142 | 63.04 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 163 | 63.10 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 9 | 22 |
| 176 | 63.13 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 184 | 63.15 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 20 | 22 |
| 194 | 63.17 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 197 | 63.19 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 11 | 10 |
| 199 | 63.19 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 22 | 20 |
| 210 | 63.21 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 217 | 63.23 | temperature | 30.0 | 30 | < th | dose dependent | no | NA | NA |
| 220 | 63.23 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 16 | 15 |
| 224 | 63.24 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 15 | NA |
| 229 | 63.24 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 15 | 21 |
| 244 | 63.26 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 11 | 20 |
| 247 | 63.27 | temperature | 25.0 | 10 | > th | dose independent | rect. | 6 | 16 |
| 260 | 63.28 | wind | 3.0 | 4320 | < th | dose independent | rect. | 1 | 1 |
| 286 | 63.29 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 9 | 23 |
| 299 | 63.32 | temperature | 10.0 | 90 | > th | dose dependent | no | NA | NA |
| 310 | 63.33 | temperature | 20.0 | 720 | > th | dose dependent | no | NA | NA |
| 343 | 63.36 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 381 | 63.40 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 383 | 63.41 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 390 | 63.42 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 391 | 63.42 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 20 | 2 |
| 402 | 63.42 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 403 | 63.43 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 17 | 6 |
| 410 | 63.43 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 440 | 63.46 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 19 | 11 |
| 455 | 63.47 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 535 | 63.58 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 17 | 5 |
| 581 | 63.64 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 625 | 63.67 | atmosphere | 1005.0 | 270 | > th | dose dependent | no | NA | NA |
| 626 | 63.67 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 689 | 63.71 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 695 | 63.72 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 745 | 63.77 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 23 | 9 |
| 776 | 63.79 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 792 | 63.79 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 794 | 63.80 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 796 | 63.80 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 6 | 22 |
| 815 | 63.82 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 22 | 17 |
| 826 | 63.83 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 7 | 19 |
| 857 | 63.85 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 2 | 6 |
| 860 | 63.85 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 5 | 16 |
| 912 | 63.87 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 3 | 21 |
| 916 | 63.87 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 919 | 63.88 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 921 | 63.88 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 1 | 6 |
| 923 | 63.88 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 2 | 6 |
| 945 | 63.89 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 18 | 11 |
| 962 | 63.90 | temperature | 20.0 | 720 | > th | dose dependent | sin | 9 | NA |