Os01g0646700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0646700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.57 | 0.378 | 9.55 | -0.917 | 0.63 | -1.26 | 0.269 | -0.994 | 0.305 | 4.34 | 21.7 | 5852 | -- | -- |
| 65.56 | 0.377 | 9.61 | -1.12 | 0.63 | -1.12 | 0.275 | -- | 0.238 | 4.3 | 22 | 6145 | -- | -- |
| 64.76 | 0.375 | 9.55 | -0.919 | 0.632 | -1.26 | -- | -0.994 | 0.303 | 4.38 | 21.71 | 5849 | -- | -- |
| 65.69 | 0.377 | 9.6 | -1.13 | 0.639 | -1.13 | -- | -- | 0.229 | 4.41 | 22 | 6144 | -- | -- |
| 85.89 | 0.432 | 9.56 | -0.852 | -- | -1.21 | -- | -0.869 | 0.303 | -- | 22 | 5638 | -- | -- |
| 97.96 | 0.464 | 9.5 | -0.423 | 0.656 | -- | 0.256 | -- | 0.661 | 4.24 | -- | -- | -- | -- |
| 98.14 | 0.464 | 9.5 | -0.426 | 0.658 | -- | -- | -- | 0.659 | 4.28 | -- | -- | -- | -- |
| 81.1 | 0.419 | 9.59 | -0.854 | -- | -1.07 | -- | -- | 0.295 | -- | 24.1 | 2713 | -- | -- |
| 82.43 | 0.423 | 9.54 | -- | 0.552 | -0.706 | -- | -- | 0.473 | 4.67 | 23.81 | 2525 | -- | -- |
| 121.5 | 0.515 | 9.51 | -0.4 | -- | -- | -- | -- | 0.677 | -- | -- | -- | -- | -- |
| 102.91 | 0.475 | 9.49 | -- | 0.65 | -- | -- | -- | 0.707 | 4.29 | -- | -- | -- | -- |
| 97.71 | 0.46 | 9.56 | -- | -- | -0.828 | -- | -- | 0.461 | -- | 24.08 | 2629 | -- | -- |
| 125.71 | 0.523 | 9.5 | -- | -- | -- | -- | -- | 0.721 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.19 | temperature | 20 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 2 | 65.25 | temperature | 20 | 14400 | < th | dose dependent | rect. | 3 | 3 |
| 11 | 65.70 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 12 |
| 32 | 65.84 | temperature | 25 | 4320 | < th | dose dependent | sin | 8 | NA |
| 52 | 65.90 | temperature | 25 | 4320 | < th | dose dependent | rect. | 22 | 5 |
| 77 | 65.98 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 87 | 65.99 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 12 |
| 91 | 66.00 | temperature | 25 | 4320 | < th | dose dependent | rect. | 22 | 3 |
| 100 | 66.01 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 120 | 66.04 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 124 | 66.04 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 10 |
| 157 | 66.11 | temperature | 10 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 221 | 66.24 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 10 |
| 227 | 66.26 | temperature | 10 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 257 | 66.32 | temperature | 10 | 4320 | > th | dose dependent | rect. | 2 | 5 |
| 322 | 66.39 | radiation | 1 | 43200 | < th | dose dependent | sin | 15 | NA |
| 485 | 66.52 | temperature | 10 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 510 | 66.54 | radiation | 1 | 43200 | < th | dose dependent | rect. | 11 | 18 |
| 611 | 66.63 | radiation | 1 | 43200 | < th | dose independent | sin | 16 | NA |
| 638 | 66.65 | temperature | 10 | 4320 | > th | dose dependent | sin | 10 | NA |
| 671 | 66.67 | radiation | 1 | 43200 | < th | dose dependent | rect. | 11 | 8 |
| 713 | 66.70 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
| 744 | 66.73 | radiation | 1 | 43200 | > th | dose independent | sin | 16 | NA |
| 857 | 66.81 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 23 |
| 859 | 66.82 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 19 |
| 873 | 66.82 | temperature | 25 | 4320 | < th | dose dependent | rect. | 4 | 23 |
| 886 | 66.84 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 9 |