Os10g0192300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF889, eukaryote family protein.
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Os10g0192300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF889, eukaryote family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 266.97 | 0.761 | -20.1 | 80.8 | 0.237 | -10500 | -0.105 | 36500 | 0.0967 | 11.1 | 90 | 90 | 9 | 1 |
| 295.55 | 0.807 | 3.04 | 0.217 | 0.279 | -0.528 | 0.0702 | -- | 0.087 | 10.9 | 90 | 90 | 9 | 1 |
| 267.02 | 0.761 | -20.1 | 80.8 | 0.237 | -10500 | -- | 36500 | 0.0968 | 11.1 | 90 | 91 | 9 | 1 |
| 295.57 | 0.806 | 3.04 | 0.219 | 0.279 | -0.519 | -- | -- | 0.0873 | 10.9 | 89.02 | 3 | 8.02 | 3.93 |
| 270.52 | 0.766 | -20.1 | 80.8 | -- | -10500 | -- | 36500 | 0.0946 | -- | 90.01 | 91 | 9.01 | 0.998 |
| 295.82 | 0.806 | 3.04 | 0.212 | 0.275 | -- | 0.0533 | -- | 0.088 | 10.9 | -- | -- | -- | -- |
| 295.83 | 0.805 | 3.04 | 0.214 | 0.275 | -- | -- | -- | 0.0882 | 10.9 | -- | -- | -- | -- |
| 300.15 | 0.807 | 3.05 | 0.217 | -- | -0.427 | -- | -- | 0.0847 | -- | 87 | 4 | 8.27 | 3.24 |
| 296.43 | 0.802 | 3.04 | -- | 0.288 | -0.355 | -- | -- | 0.0684 | 10.9 | 87.7 | 2 | 8.92 | 3.08 |
| 300.52 | 0.81 | 3.05 | 0.208 | -- | -- | -- | -- | 0.0863 | -- | -- | -- | -- | -- |
| 297.04 | 0.806 | 3.05 | -- | 0.273 | -- | -- | -- | 0.0643 | 10.8 | -- | -- | -- | -- |
| 301.26 | 0.808 | 3.06 | -- | -- | -0.332 | -- | -- | 0.0643 | -- | 86 | 2 | 8.94 | 3.04 |
| 301.66 | 0.811 | 3.05 | -- | -- | -- | -- | -- | 0.0632 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 266.97 | humidity | 90 | 90 | > th | dose independent | rect. | 9 | 1 |
| 2 | 266.97 | humidity | 90 | 90 | > th | dose dependent | rect. | 9 | 1 |
| 3 | 269.08 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 3 | 6 |
| 8 | 269.24 | wind | 7 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 12 | 269.97 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 3 | 6 |
| 24 | 273.03 | wind | 7 | 10 | > th | dose independent | rect. | 12 | 1 |
| 28 | 274.40 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 7 | 1 |
| 35 | 274.40 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 44 | 274.47 | humidity | 70 | 10 | < th | dose independent | rect. | 7 | 1 |
| 104 | 274.47 | humidity | 70 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 167 | 274.51 | wind | 1 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 171 | 274.55 | wind | 1 | 10 | < th | dose independent | rect. | 7 | 1 |
| 176 | 275.10 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 3 | 1 |
| 183 | 275.10 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 3 | 1 |
| 207 | 275.61 | humidity | 50 | 90 | < th | dose independent | rect. | 13 | 2 |
| 208 | 275.61 | humidity | 50 | 90 | < th | dose dependent | rect. | 13 | 2 |
| 212 | 275.88 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 12 | 1 |
| 214 | 275.92 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 12 | 1 |
| 247 | 278.74 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 24 | 5 |
| 250 | 278.94 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 24 | 5 |
| 269 | 280.38 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 2 | 12 |
| 281 | 281.38 | wind | 1 | 90 | < th | dose independent | rect. | 2 | 1 |
| 291 | 282.18 | atmosphere | 1000 | 30 | < th | dose dependent | rect. | 3 | 12 |
| 294 | 282.23 | wind | 1 | 90 | < th | dose dependent | rect. | 2 | 2 |
| 296 | 282.34 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 23 | 15 |
| 308 | 282.62 | temperature | 30 | 30 | > th | dose dependent | rect. | 13 | 1 |
| 350 | 283.58 | wind | 1 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 364 | 283.87 | atmosphere | 1000 | 30 | < th | dose dependent | rect. | 24 | 15 |
| 373 | 284.02 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 6 | 8 |
| 391 | 284.20 | wind | 1 | 720 | < th | dose dependent | rect. | 16 | 6 |
| 396 | 284.31 | radiation | 30 | 10 | > th | dose independent | rect. | 7 | 1 |
| 413 | 284.31 | wind | 9 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 440 | 284.36 | wind | 1 | 720 | < th | dose independent | rect. | 19 | 2 |
| 508 | 284.77 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 21 | 11 |
| 530 | 285.02 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 6 | 8 |
| 553 | 285.21 | atmosphere | 1000 | 270 | < th | dose independent | sin | 6 | NA |
| 658 | 286.09 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 23 | 8 |
| 659 | 286.09 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 19 | 16 |
| 708 | 286.40 | atmosphere | 1000 | 270 | > th | dose independent | sin | 5 | NA |
| 786 | 286.74 | wind | 9 | 270 | > th | dose independent | rect. | 9 | 1 |
| 862 | 287.04 | atmosphere | 1000 | 90 | < th | dose dependent | sin | 5 | NA |
| 872 | 287.09 | wind | 1 | 720 | < th | dose independent | rect. | 16 | 6 |
| 888 | 287.16 | atmosphere | 1000 | 720 | > th | dose independent | sin | 8 | NA |
| 958 | 287.57 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 968 | 287.62 | humidity | 80 | 30 | < th | dose dependent | rect. | 24 | 2 |