BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0624500 Os01g0624500|AF192467
(367 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0624500 Sgt1 712 0.0
Os01g0512800 192 3e-49
Os05g0204900 Similar to Type 5 protein serine/threonine pho... 80 3e-15
Os03g0617100 78 8e-15
Os03g0680100 Tetratricopeptide-like helical domain containi... 67 2e-11
Os02g0644100 Similar to Heat shock protein STI (Stress indu... 65 5e-11
Os03g0679800 Tetratricopeptide-like helical domain containi... 65 6e-11
>Os01g0624500 Sgt1
Length = 367
Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/367 (95%), Positives = 351/367 (95%)
Query: 1 MATAAASDLESKAKAAFVDDDFELAAELYTQAIEASPATAELYADRAQAHIKLGNYTEAV 60
MATAAASDLESKAKAAFVDDDFELAAELYTQAIEASPATAELYADRAQAHIKLGNYTEAV
Sbjct: 1 MATAAASDLESKAKAAFVDDDFELAAELYTQAIEASPATAELYADRAQAHIKLGNYTEAV 60
Query: 61 ADANKAIELDPSMHKAYLRKGAACIRLEEYQTAKAALELGYSFASGDSRFTRLMKECDER 120
ADANKAIELDPSMHKAYLRKGAACIRLEEYQTAKAALELGYSFASGDSRFTRLMKECDER
Sbjct: 61 ADANKAIELDPSMHKAYLRKGAACIRLEEYQTAKAALELGYSFASGDSRFTRLMKECDER 120
Query: 121 IAEELSEVPVKKAEDGAAAPSVASFVEEKDDAANMDNTPPMVEVKPKYRHDFYNSATEVV 180
IAEELSEVPVKKAEDGAAAPSVASFVEEKDDAANMDNTPPMVEVKPKYRHDFYNSATEVV
Sbjct: 121 IAEELSEVPVKKAEDGAAAPSVASFVEEKDDAANMDNTPPMVEVKPKYRHDFYNSATEVV 180
Query: 181 LTIFAKGVPAENVVVDFGEQMLSVSIEVPGEEPYHFQPRLFSKIIPEKSRYQVLSTKVEI 240
LTIFAKGVPAENVVVDFGEQMLSVSIEVPGEEPYHFQPRLFSKIIPEKSRYQVLSTKVEI
Sbjct: 181 LTIFAKGVPAENVVVDFGEQMLSVSIEVPGEEPYHFQPRLFSKIIPEKSRYQVLSTKVEI 240
Query: 241 RLAKAEQITWTSLDYDKKPKAVPQKIIPPAESAQRPSYPSSKSKKDWDXXXXXXXXXXXX 300
RLAKAEQITWTSLDYDKKPKAVPQKIIPPAESAQRPSYPSSKSKKDWD
Sbjct: 241 RLAKAEQITWTSLDYDKKPKAVPQKIIPPAESAQRPSYPSSKSKKDWDKLEAEVKKEEKE 300
Query: 301 XXXXGDAALNKFFRDIYSDADEDMRRAMMKSFVESNGTVLSTNWKDVGSKKVEGSPPDGM 360
GDAALNKFFRDIYSDADEDMRRAMMKSFVESNGTVLSTNWKDVGSKKVEGSPPDGM
Sbjct: 301 EKLEGDAALNKFFRDIYSDADEDMRRAMMKSFVESNGTVLSTNWKDVGSKKVEGSPPDGM 360
Query: 361 ELKKWEY 367
ELKKWEY
Sbjct: 361 ELKKWEY 367
>Os01g0512800
Length = 223
Score = 192 bits (488), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 118/267 (44%), Positives = 150/267 (56%), Gaps = 52/267 (19%)
Query: 103 FASGDSRFTRLMKECDERIAEELSEVPVKKAEDGAAAPSVASFVEEKDDAANMDNTPPMV 162
A GD+RF +L KE D++ + + P +ED AAA S
Sbjct: 7 LAPGDARFAKLAKELDDKAPPKAAAAPPAASEDQAAASSG-------------------- 46
Query: 163 EVKPKYRHDFYNSATEVVLTIFAKGVPAENVVVDFGEQMLSVSIEVPGEEPYHFQPRLFS 222
KPKY+HDFYN A+EVV+T+FAK V AE+V VDFGEQMLSVS+EV
Sbjct: 47 --KPKYKHDFYNGASEVVVTVFAKSVAAEHVSVDFGEQMLSVSVEV-------------- 90
Query: 223 KIIPEKSRYQVLSTKVEIRLAKA-EQITWTSLDYDKKPKAVPQKIIPPAESAQRPSYPSS 281
+P K RY +L +K+E+RLAKA EQ+TWTSL+Y K K+ A + R
Sbjct: 91 --VPAKCRYSILPSKIEVRLAKADEQVTWTSLEYTSKAN---NKLAATATTTTR------ 139
Query: 282 KSKKDWDXXXXXXXXXXXXXXX-XGDAALNKFFRDIYSDADEDMRRAMMKSFVESNGTVL 340
K DWD +N+FF+ +Y + DEDMRRA+MKS+VES VL
Sbjct: 140 -KKVDWDKLEAEVKKEEEEEEVDTATPVVNRFFQQMYGNGDEDMRRAIMKSYVES--YVL 196
Query: 341 STNWKDVGSKKVEGSPPDGMELKKWEY 367
ST+WKDVGSKK+E S P+GMEL KWEY
Sbjct: 197 STDWKDVGSKKIEASAPEGMELHKWEY 223
>Os05g0204900 Similar to Type 5 protein serine/threonine phosphatase 62 kDa
isoform
Length = 483
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 69/116 (59%)
Query: 6 ASDLESKAKAAFVDDDFELAAELYTQAIEASPATAELYADRAQAHIKLGNYTEAVADANK 65
+ +L+ KA AF + F LA ELY+QAIE + + A +A+RA AH KL Y AV DA+K
Sbjct: 12 SEELKLKANDAFKANKFSLAIELYSQAIELNSSNAVYWANRAFAHTKLEEYGSAVQDASK 71
Query: 66 AIELDPSMHKAYLRKGAACIRLEEYQTAKAALELGYSFASGDSRFTRLMKECDERI 121
AIE+D K Y R+GAA + + +++ A + + D TR +KEC++ +
Sbjct: 72 AIEIDARYSKGYYRRGAAYLAMGKFKEALKDFQQVKRISPNDPDATRKLKECEKAV 127
>Os03g0617100
Length = 47
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/47 (87%), Positives = 42/47 (89%)
Query: 1 MATAAASDLESKAKAAFVDDDFELAAELYTQAIEASPATAELYADRA 47
MATA A DL+SKA AAFVDDDFELA ELYTQAIEASPATAE YADRA
Sbjct: 1 MATAGALDLDSKAMAAFVDDDFELATELYTQAIEASPATAEFYADRA 47
>Os03g0680100 Tetratricopeptide-like helical domain containing protein
Length = 505
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 53/94 (56%)
Query: 7 SDLESKAKAAFVDDDFELAAELYTQAIEASPATAELYADRAQAHIKLGNYTEAVADANKA 66
S L+ AF + D+ A YT+A++ PA A LY++R+ H++ G EA+ DAN
Sbjct: 377 SKLKLHGGKAFEEGDYAGAIIFYTEAMKLDPADATLYSNRSLCHLRSGAAQEALLDANDC 436
Query: 67 IELDPSMHKAYLRKGAACIRLEEYQTAKAALELG 100
I+L P K Y RKG A + L+EY+ A A G
Sbjct: 437 IKLKPEWTKGYYRKGCAHMALKEYEEACTAFMAG 470
>Os02g0644100 Similar to Heat shock protein STI (Stress inducible protein)
(GmSTI)
Length = 578
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 55/110 (50%)
Query: 12 KAKAAFVDDDFELAAELYTQAIEASPATAELYADRAQAHIKLGNYTEAVADANKAIELDP 71
K F + + A + YT+AI +P ++Y++RA + KLG E + DA K IELDP
Sbjct: 395 KGNQLFKEQKYPDAVKHYTEAIRRNPKDPKVYSNRAACYTKLGAMPEGLKDAEKCIELDP 454
Query: 72 SMHKAYLRKGAACIRLEEYQTAKAALELGYSFASGDSRFTRLMKECDERI 121
+ K Y RKGA ++EY A + G + +K C E+I
Sbjct: 455 TFSKGYTRKGAIQFFMKEYDKAMETYQAGLKHDPNNPELLDGVKRCIEQI 504
>Os03g0679800 Tetratricopeptide-like helical domain containing protein
Length = 462
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%)
Query: 7 SDLESKAKAAFVDDDFELAAELYTQAIEASPATAELYADRAQAHIKLGNYTEAVADANKA 66
S L+ AF + D+ A YT+A++ PA A LY++R+ H++ G EA+ DAN
Sbjct: 334 SKLKLHGGKAFEEGDYAGAIIFYTEAMKLDPADATLYSNRSLCHLRSGAAQEALLDANDC 393
Query: 67 IELDPSMHKAYLRKGAACIRLEEYQTAKAALELG 100
I+L P K + RKG A + L+EY+ A A G
Sbjct: 394 IKLKPEWTKGHYRKGCAHMALKEYEEACTAFMAG 427
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.127 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,875,482
Number of extensions: 458675
Number of successful extensions: 1209
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 1205
Number of HSP's successfully gapped: 11
Length of query: 367
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 265
Effective length of database: 11,709,973
Effective search space: 3103142845
Effective search space used: 3103142845
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 157 (65.1 bits)