Os01g0624500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Sgt1.
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Os01g0624500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Sgt1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.31 | 0.33 | 13.6 | 0.464 | 0.572 | 0.527 | 0.939 | 0.0984 | 0.32 | 12.8 | 20.54 | 783 | -- | -- |
| 49.33 | 0.327 | 13.6 | 0.447 | 0.571 | 0.516 | 0.914 | -- | 0.316 | 12.8 | 20.6 | 775 | -- | -- |
| 52.7 | 0.338 | 13.6 | 0.443 | 0.582 | 0.501 | -- | -0.216 | 0.31 | 13 | 20.5 | 796 | -- | -- |
| 52.81 | 0.338 | 13.6 | 0.47 | 0.578 | 0.534 | -- | -- | 0.317 | 13 | 20.5 | 842 | -- | -- |
| 70.99 | 0.395 | 13.6 | 0.583 | -- | 0.367 | -- | 0.114 | 0.362 | -- | 20.5 | 796 | -- | -- |
| 56.98 | 0.354 | 13.6 | 0.638 | 0.514 | -- | 0.963 | -- | 0.43 | 13.1 | -- | -- | -- | -- |
| 60.79 | 0.365 | 13.6 | 0.672 | 0.515 | -- | -- | -- | 0.436 | 13.3 | -- | -- | -- | -- |
| 69.52 | 0.388 | 13.6 | 0.552 | -- | 0.399 | -- | -- | 0.308 | -- | 21.1 | 212 | -- | -- |
| 57.12 | 0.352 | 13.6 | -- | 0.549 | 0.664 | -- | -- | 0.224 | 13.2 | 19.39 | 6624 | -- | -- |
| 77.15 | 0.41 | 13.6 | 0.652 | -- | -- | -- | -- | 0.425 | -- | -- | -- | -- | -- |
| 72.7 | 0.399 | 13.6 | -- | 0.504 | -- | -- | -- | 0.361 | 13.3 | -- | -- | -- | -- |
| 74.2 | 0.401 | 13.6 | -- | -- | 0.681 | -- | -- | 0.241 | -- | 18.3 | 13732 | -- | -- |
| 88.36 | 0.439 | 13.6 | -- | -- | -- | -- | -- | 0.353 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.06 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 2 | 42.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 12 |
| 18 | 42.77 | temperature | 30 | 10 | < th | dose dependent | sin | 3 | NA |
| 35 | 43.72 | temperature | 10 | 10 | > th | dose dependent | sin | 3 | NA |
| 42 | 44.04 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 12 |
| 65 | 44.46 | temperature | 25 | 10 | > th | dose dependent | sin | 6 | NA |
| 72 | 44.53 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 21 |
| 80 | 44.69 | temperature | 25 | 90 | > th | dose independent | rect. | 5 | 6 |
| 110 | 45.02 | temperature | 25 | 90 | < th | dose independent | sin | 4 | NA |
| 117 | 45.10 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 135 | 45.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 15 |
| 152 | 45.49 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 17 |
| 158 | 45.54 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 12 |
| 172 | 45.64 | temperature | 15 | 720 | > th | dose dependent | rect. | 5 | 2 |
| 174 | 45.68 | temperature | 25 | 90 | > th | dose independent | rect. | 5 | 8 |
| 179 | 45.75 | temperature | 25 | 270 | > th | dose dependent | rect. | 5 | 3 |
| 187 | 45.82 | temperature | 25 | 90 | > th | dose independent | sin | 4 | NA |
| 205 | 45.99 | temperature | 25 | 90 | > th | dose independent | rect. | 5 | 11 |
| 207 | 46.00 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 8 |
| 217 | 46.09 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 5 |
| 223 | 46.13 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 3 |
| 235 | 46.20 | temperature | 20 | 90 | > th | dose dependent | rect. | 5 | 6 |
| 282 | 46.53 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 300 | 46.63 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 5 |
| 303 | 46.66 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 2 |
| 326 | 46.78 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 18 |
| 392 | 47.03 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 11 |
| 479 | 47.28 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 498 | 47.33 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 13 |
| 538 | 47.41 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 6 |
| 545 | 47.44 | temperature | 20 | 720 | > th | dose independent | sin | 5 | NA |
| 751 | 47.94 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 923 | 48.24 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 10 |
| 992 | 48.36 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 20 |