BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0610100 Os01g0610100|AK059810
(176 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0610100 Similar to Clone ZZZ51 mRNA sequence 314 3e-86
Os02g0550100 Similar to Vacuolar ATP synthase 16 kDa proteo... 74 4e-14
Os12g0168900 Similar to Vacuolar ATP synthase 16 kDa proteo... 74 5e-14
Os11g0169900 Similar to Vacuolar ATP synthase 16 kDa proteo... 74 6e-14
Os05g0106100 Similar to Vacuolar ATP synthase 16 kDa proteo... 74 7e-14
Os01g0962300 Similar to Vacuolar ATP synthase 16 kDa proteo... 69 2e-12
>Os01g0610100 Similar to Clone ZZZ51 mRNA sequence
Length = 176
Score = 314 bits (804), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 164/176 (93%), Positives = 164/176 (93%)
Query: 1 MSSDSSSWARALVQISPYTFSAIGIAVSIGVSVLGAAWGIFITGSSLIGAAIKAPRITSK 60
MSSDSSSWARALVQISPYTFSAIGIAVSIGVSVLGAAWGIFITGSSLIGAAIKAPRITSK
Sbjct: 1 MSSDSSSWARALVQISPYTFSAIGIAVSIGVSVLGAAWGIFITGSSLIGAAIKAPRITSK 60
Query: 61 NLISVIFCEXXXXXXXXXXXXLQTKLESVPTALVHHPESLRAGYAIFASGLIVGFANLVC 120
NLISVIFCE LQTKLESVPTALVHHPESLRAGYAIFASGLIVGFANLVC
Sbjct: 61 NLISVIFCEAVAIYGVIVAIILQTKLESVPTALVHHPESLRAGYAIFASGLIVGFANLVC 120
Query: 121 GVCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSSQATWPAKA 176
GVCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSSQATWPAKA
Sbjct: 121 GVCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSSQATWPAKA 176
>Os02g0550100 Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC
3.6.3.14) (V- ATPase 16 kDa proteolipid subunit)
(Fragment)
Length = 167
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 6/157 (3%)
Query: 14 QISPYTFSAIGIAVSIGVSVLGAAWGIFITGSSLIGAAIKAPRITSKNLISVIFCEXXXX 73
+ +P+ F +G A ++ S +GAA+G +G + + P + K+++ V+
Sbjct: 11 ETAPF-FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGI 69
Query: 74 XXXXXXXXLQTKLESVPTALVHHPESLRAGYAIFASGLIVGFANLVCGVCVGIIGSSCAL 133
+ T + P A P L GYA +SGL G A L G+ +GI+G +
Sbjct: 70 YGLIIAVIISTGIN--PKA---KPYFLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVR 124
Query: 134 SDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSSQA 170
++AQ LFV +++I IF AL L+G+IVGII+SS+A
Sbjct: 125 ANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRA 161
>Os12g0168900 Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC
3.6.3.14) (V- ATPase 16 kDa proteolipid subunit)
(Fragment)
Length = 165
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 6/157 (3%)
Query: 14 QISPYTFSAIGIAVSIGVSVLGAAWGIFITGSSLIGAAIKAPRITSKNLISVIFCEXXXX 73
+ +P+ F +G A ++ S +GAA+G +G + + P + K+++ V+
Sbjct: 9 ETAPF-FGFLGAASALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGI 67
Query: 74 XXXXXXXXLQTKLESVPTALVHHPESLRAGYAIFASGLIVGFANLVCGVCVGIIGSSCAL 133
+ T + P A P L GYA +SGL G A L G+ +GI+G +
Sbjct: 68 YGLIIAVIISTGIN--PKA---KPYYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVR 122
Query: 134 SDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSSQA 170
++AQ LFV +++I IF AL L+G+IVGII+SS+A
Sbjct: 123 ANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRA 159
>Os11g0169900 Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC
3.6.3.14) (V- ATPase 16 kDa proteolipid subunit)
(Fragment)
Length = 165
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 6/157 (3%)
Query: 14 QISPYTFSAIGIAVSIGVSVLGAAWGIFITGSSLIGAAIKAPRITSKNLISVIFCEXXXX 73
+ +P+ F +G A ++ S +GAA+G +G + + P + K+++ V+
Sbjct: 9 ETAPF-FGFLGAASALIFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGI 67
Query: 74 XXXXXXXXLQTKLESVPTALVHHPESLRAGYAIFASGLIVGFANLVCGVCVGIIGSSCAL 133
+ T + P A P L GYA +SGL G A L G+ +GI+G +
Sbjct: 68 YGLIIAVIISTGIN--PKA---KPYYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVR 122
Query: 134 SDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSSQA 170
++AQ LFV +++I IF AL L+G+IVGII+SS+A
Sbjct: 123 ANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRA 159
>Os05g0106100 Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC
3.6.3.14) (V- ATPase 16 kDa proteolipid subunit)
(Fragment)
Length = 166
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 6/157 (3%)
Query: 14 QISPYTFSAIGIAVSIGVSVLGAAWGIFITGSSLIGAAIKAPRITSKNLISVIFCEXXXX 73
+ +P+ F +G A ++ S +GAA+G +G + + P + K+++ V+
Sbjct: 10 ETAPF-FGFLGAASALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGI 68
Query: 74 XXXXXXXXLQTKLESVPTALVHHPESLRAGYAIFASGLIVGFANLVCGVCVGIIGSSCAL 133
+ T + P A P L GYA +SGL G A L G+ +GI+G +
Sbjct: 69 YGLIIAVIISTGIN--PKA---KPYFLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVR 123
Query: 134 SDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSSQA 170
++AQ LFV +++I IF AL L+G+IVGII+SS+A
Sbjct: 124 ANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRA 160
>Os01g0962300 Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC
3.6.3.14) (V- ATPase 16 kDa proteolipid subunit)
(Fragment)
Length = 165
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 82/157 (52%), Gaps = 6/157 (3%)
Query: 14 QISPYTFSAIGIAVSIGVSVLGAAWGIFITGSSLIGAAIKAPRITSKNLISVIFCEXXXX 73
+ +P+ IG A+++ S +GAA+G +G + + P + K+++ V+
Sbjct: 9 EFAPF-LGFIGAALALVFSCMGAAYGTARSGVGVAHMGVMRPELVMKSIVPVVMAGVLGI 67
Query: 74 XXXXXXXXLQTKLESVPTALVHHPESLRAGYAIFASGLIVGFANLVCGVCVGIIGSSCAL 133
+ T + PTA+ P G A+GL G L G+ +G++G +
Sbjct: 68 YGLIIAVIITTGIN--PTAM---PYYHFDGSVHLAAGLATGLCALAAGLAIGVVGDAGVR 122
Query: 134 SDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSSQA 170
++AQ LFV +++I IF ALGL+G+IVGII+SS+A
Sbjct: 123 ANAQQPKLFVGMILILIFAEALGLYGLIVGIILSSRA 159
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.135 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,685,478
Number of extensions: 148996
Number of successful extensions: 356
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 344
Number of HSP's successfully gapped: 6
Length of query: 176
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 82
Effective length of database: 12,127,685
Effective search space: 994470170
Effective search space used: 994470170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 152 (63.2 bits)