BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0574600 Os01g0574600|AK064876
(341 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0574600 Similar to Gamma hydroxybutyrate dehydrogenase... 550 e-157
Os02g0562700 Similar to Gamma hydroxybutyrate dehydrogenase... 302 2e-82
Os01g0742300 Hydroxyacid dehydrogenase/reductase family pro... 125 4e-29
Os06g0677400 Hydroxyacid dehydrogenase/reductase family pro... 104 8e-23
Os05g0565500 6-phosphogluconate dehydrogenase family protein 102 3e-22
Os06g0258900 Ketose-bisphosphate aldolase, class-II family ... 75 9e-14
>Os01g0574600 Similar to Gamma hydroxybutyrate dehydrogenase (EC 1.1.1.61)
Length = 341
Score = 550 bits (1416), Expect = e-157, Method: Compositional matrix adjust.
Identities = 276/290 (95%), Positives = 276/290 (95%)
Query: 52 KVGFLGLGIMGAPMASNLINAGCDVTVWNRTRSKCDPLLSLGAKYEPSPADVASSCDVTF 111
KVGFLGLGIMGAPMASNLINAGCDVTVWNRTRSKCDPLLSLGAKYEPSPADVASSCDVTF
Sbjct: 52 KVGFLGLGIMGAPMASNLINAGCDVTVWNRTRSKCDPLLSLGAKYEPSPADVASSCDVTF 111
Query: 112 AMLADPESAVEVACGANGAAQGMAPGKGYVDVSTVDAATSKLIGKHITSTGASFLEAPVS 171
AMLADPESAVEVACGANGAAQGMAPGKGYVDVSTVDAATSKLIGKHITSTGASFLEAPVS
Sbjct: 112 AMLADPESAVEVACGANGAAQGMAPGKGYVDVSTVDAATSKLIGKHITSTGASFLEAPVS 171
Query: 172 GSKKPAEDGLLIFLTAGDESLYNRVASLLDVMGKSRFFLGDVGKGADMKLXXXXXXXXXX 231
GSKKPAEDGLLIFLTAGDESLYNRVASLLDVMGKSRFFLGDVGKGADMKL
Sbjct: 172 GSKKPAEDGLLIFLTAGDESLYNRVASLLDVMGKSRFFLGDVGKGADMKLVVNMVMGSMM 231
Query: 232 XXXXEGLLLSEKVGLDPNTLVEVISQGAISAPMFSLKGPSMVKAAYPTAFPLKHQQKDLR 291
EGLLLSEKVGLDPNTLVEVISQGAISAPMFSLKGPSMVKAAYPTAFPLKHQQKDLR
Sbjct: 232 VSFSEGLLLSEKVGLDPNTLVEVISQGAISAPMFSLKGPSMVKAAYPTAFPLKHQQKDLR 291
Query: 292 LALALAESVSQSIPTVAAANELYKVAKSLGLADQDFSAVIEALKAKEQSK 341
LALALAESVSQSIPTVAAANELYKVAKSLGLADQDFSAVIEALKAKEQSK
Sbjct: 292 LALALAESVSQSIPTVAAANELYKVAKSLGLADQDFSAVIEALKAKEQSK 341
>Os02g0562700 Similar to Gamma hydroxybutyrate dehydrogenase (EC 1.1.1.61)
Length = 293
Score = 302 bits (774), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 155/284 (54%), Positives = 195/284 (68%)
Query: 52 KVGFLGLGIMGAPMASNLINAGCDVTVWNRTRSKCDPLLSLGAKYEPSPADVASSCDVTF 111
+VGFLGLGIMG MA+NL+ G VTVWNRT SKC L++LGA +PA V + C T
Sbjct: 2 EVGFLGLGIMGKAMAANLLRHGFRVTVWNRTLSKCQELVALGAAVGETPAAVVAKCRYTI 61
Query: 112 AMLADPESAVEVACGANGAAQGMAPGKGYVDVSTVDAATSKLIGKHITSTGASFLEAPVS 171
AML+DP +A+ V +G + + GKGYVD+STVDAATS I + I G +F+EAPVS
Sbjct: 62 AMLSDPSAALSVVFDKDGVLEQIGEGKGYVDMSTVDAATSCKISEAIKQKGGAFVEAPVS 121
Query: 172 GSKKPAEDGLLIFLTAGDESLYNRVASLLDVMGKSRFFLGDVGKGADMKLXXXXXXXXXX 231
GSKKPAEDG L+ L AGD+ LY+ + DV+GK FFLG++G GA MKL
Sbjct: 122 GSKKPAEDGQLVILAAGDKVLYDDMVPAFDVLGKKSFFLGEIGNGAKMKLVVNMIMGSMM 181
Query: 232 XXXXEGLLLSEKVGLDPNTLVEVISQGAISAPMFSLKGPSMVKAAYPTAFPLKHQQKDLR 291
EGL L++ GL P TL++V+ GAI+ PMF LKGPSM++ +Y AFPLKHQQKD+R
Sbjct: 182 NALSEGLSLADNSGLSPQTLLDVLDLGAIANPMFKLKGPSMLQGSYNPAFPLKHQQKDMR 241
Query: 292 LALALAESVSQSIPTVAAANELYKVAKSLGLADQDFSAVIEALK 335
LALAL + + S+P AA+NE +K A+SLGL D DFSAV E LK
Sbjct: 242 LALALGDENAVSMPVAAASNEAFKKARSLGLGDLDFSAVYEVLK 285
>Os01g0742300 Hydroxyacid dehydrogenase/reductase family protein
Length = 316
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 135/264 (51%), Gaps = 2/264 (0%)
Query: 52 KVGFLGLGIMGAPMASNLINAGCDVTVWNRTRSKCDPLLSLGAKYEPSPADVASSCDVTF 111
+V ++G G+MG MA +L+ AG +TV+NRT SK + L+S GA SP A++ DV F
Sbjct: 21 RVAWVGTGVMGQSMAGHLLAAGYALTVYNRTASKAEGLVSRGATLAESPRAAAAAADVIF 80
Query: 112 AMLADPESAVEVACG-ANGAAQGMAPGKGYVDVSTVDAATSKLIGKHITSTGASFLEAPV 170
M+ P + + GA G+APG VD++T D + I + + + ++APV
Sbjct: 81 LMVGFPSDVRSTSLDPSTGALAGLAPGGLLVDMTTSDPTLAAEIAEAAAAKSCAAVDAPV 140
Query: 171 SGSKKPAEDGLLIFLTAGDESLYNRVASLLDVMGKSRFFLGDVGKGADMKLXXXXXXXXX 230
SG + A L GD ++ R+A L +MG + ++G G G KL
Sbjct: 141 SGGDRGARSATLSIFAGGDAAVVARLAPLFKLMGNA-LYMGGPGAGQRAKLGNQIAIAST 199
Query: 231 XXXXXEGLLLSEKVGLDPNTLVEVISQGAISAPMFSLKGPSMVKAAYPTAFPLKHQQKDL 290
EG++ + K GLD +E IS GA + L G M++ F ++H KDL
Sbjct: 200 MVGLVEGMVYAHKAGLDVAKWLEAISTGAAGSKSLDLYGKRMLERDMAAGFYVRHFVKDL 259
Query: 291 RLALALAESVSQSIPTVAAANELY 314
+ L+ +++ ++P +A A++LY
Sbjct: 260 GICLSECQAMGLALPGLALAHQLY 283
>Os06g0677400 Hydroxyacid dehydrogenase/reductase family protein
Length = 342
Score = 104 bits (260), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 126/302 (41%), Gaps = 23/302 (7%)
Query: 52 KVGFLGLGIMGAPMASNLINAGCDVTVWNRTRSKCDPLLSLGAKYEPSPADVASSCDVTF 111
VGF+GLG MGA MA NL+ AG VTV + + G + SP +V+ S DV
Sbjct: 34 NVGFIGLGNMGAHMARNLVMAGYKVTVHDVNENTMKKFSDDGIPTKLSPLEVSKSSDVVI 93
Query: 112 AMLADPESAVEVACGANG-AAQGMAPGKG-YVDVSTVDAATSKLIGKHITSTGAS----- 164
ML ++V G NG A G G Y+D STVD TS+ I I+
Sbjct: 94 TMLPSSAHVLDVYNGRNGLLANGGCLGPWLYIDSSTVDPQTSRKISMDISRCTLKEKKAY 153
Query: 165 -----FLEAPVSGSKKPAEDGLLIFLTAGDESLYNRVASLLDVMGKSRFFLGDVGKGADM 219
L+APVSG AE G L F+ G E Y LL MGK + G G G+
Sbjct: 154 AEKPMMLDAPVSGGVPAAEAGKLTFMVGGSEEAYLAAKPLLLSMGKKTIYCGGAGNGSVA 213
Query: 220 KLXXXXXXXXXXXXXXEGLLLSEKVGLDPNTLVEVISQGAISA---------PMFSLKGP 270
K+ E L + +G+ + L ++ + + P + P
Sbjct: 214 KICNNMAMAISMLGVSEAFALGQNLGIKASVLTDIFNCSSARCWSSDTYNPVPGVMMDVP 273
Query: 271 SMVKAAYPTAFPLKHQQKDLRLALALAESVSQSIPTVAAANELYKVAKSLGLADQDFSAV 330
S Y F K KDL LA+A A V + P + A E+Y+ + G +DFS
Sbjct: 274 S--SRNYDGGFTSKLMTKDLDLAMASASGVGFNCPFGSQALEIYRKLCADGCELKDFSCA 331
Query: 331 IE 332
Sbjct: 332 FR 333
>Os05g0565500 6-phosphogluconate dehydrogenase family protein
Length = 312
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 144/290 (49%), Gaps = 7/290 (2%)
Query: 52 KVGFLGLGIMGAPMASNLINAGCDVTVWNRTRSKCDPLLSLGAKYEPSPADVASSCDVTF 111
+VG++G+G+MG MA+ L+ AG VT + RT +K + L++ GA SPA VA++CDV F
Sbjct: 20 RVGWVGIGVMGGAMAARLLAAGFAVTAYARTPAKAEALVAAGASLAGSPAAVAAACDVVF 79
Query: 112 AMLADPESAVEVAC-GANGAAQGMAPGKGYVDVSTVDAATSKLIGKHITSTGASFLEAPV 170
M+ +P V A+G G+ PG VD ++ + ++ + + G +++PV
Sbjct: 80 TMVGNPGDVRAVVLDAASGVLAGLRPGGVLVDCTSSSPSLAREVAAAARAAGCYAVDSPV 139
Query: 171 SGSKKPAEDGLLIFLTAGDESLYNRVASLLDVMGKSRFFLGDVGKGADMKLXXXXXXXXX 230
SG A DG L L GDE++ + +A L +G+ ++G G G K+
Sbjct: 140 SGGDVGARDGALALLAGGDEAVVSWLAPLFAHLGRPT-YMGPPGSGQSSKIANQIAVAGA 198
Query: 231 XXXXXEGLLLSEKVGLDPNTLVEVISQGAISAPMFSLKGPSMVKAAYPTAFPLKHQQKDL 290
E L + GLD ++ +S+GA + + + G M++ + + +K+ KDL
Sbjct: 199 VVGASEALAFANAAGLDAPLFLDAVSKGAAGSRVMDIFGERMLRREFASGGSVKYIIKDL 258
Query: 291 RLALALAESV--SQSIPTVAAANELYKVAKSLGLAD---QDFSAVIEALK 335
+AL E ++++P A +++ + G D Q V+E L
Sbjct: 259 GMALETEEGPEGAKALPGAAMFRQMFSAMAANGDGDLSLQGLITVVERLN 308
>Os06g0258900 Ketose-bisphosphate aldolase, class-II family protein
Length = 1376
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 122/288 (42%), Gaps = 7/288 (2%)
Query: 53 VGFLGLGIMGAPMASNLINAGCDVTVWNRTRSKCDPLLSLGAKYEPSPADVASSCDVTFA 112
+GF+GLG MG MAS+L+ +G V ++ + LG + SP +V+ ++
Sbjct: 326 IGFIGLGAMGFGMASHLLKSGFSVIAYDVYKPTLARFTDLGGLTKDSPEEVSKDVEILVI 385
Query: 113 MLADPESAVEVACGANGAAQGMAPGKGYVDVSTVDAATSKLIGKHITS--TGASFLEAPV 170
M+A+ A V G GA MA G + STV + + + + ++APV
Sbjct: 386 MVANEVQAENVLYGNAGAVSVMAAGTSIILSSTVSPGFVIKLKERLEAECRDIKLVDAPV 445
Query: 171 SGSKKPAEDGLLIFLTAGDESLYNRVASLLDVMGKSRFFL-GDVGKGADMKLXXXXXXXX 229
SG K A +G L + +G + S+L + + + + G G + +K+
Sbjct: 446 SGGVKRAAEGTLTIIASGTDEALQCTGSVLSALSEKLYVIKGGCGAASSVKMVNQLLAGV 505
Query: 230 XXXXXXEGLLLSEKVGLDPNTLVEVISQGAISAPMFSLKGPSMVKAAYPTAFPLKHQQKD 289
E + ++ L L E+I + MF + P M+ Y + KD
Sbjct: 506 HIASAAEAMAFGARLNLRTRRLFEIIQHARGYSWMFGNRVPHMLDNDYTPYSAVDIFVKD 565
Query: 290 LRLALALAESVSQSIP--TVAAANELYKVAKSLGLADQDFSAVIEALK 335
L + ES + IP + A++L+ + G D +AV++ +
Sbjct: 566 --LGIVSHESSNARIPLHVSSIAHQLFLSGSASGWGRFDDAAVVKVYE 611
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.131 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,465,838
Number of extensions: 321946
Number of successful extensions: 878
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 869
Number of HSP's successfully gapped: 6
Length of query: 341
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 239
Effective length of database: 11,709,973
Effective search space: 2798683547
Effective search space used: 2798683547
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)