BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0567200 Os01g0567200|AK071488
(272 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0567200 Conserved hypothetical protein 367 e-102
Os01g0108500 Conserved hypothetical protein 340 7e-94
Os08g0195400 Conserved hypothetical protein 85 6e-17
Os03g0629800 Conserved hypothetical protein 78 5e-15
Os02g0265300 Conserved hypothetical protein 76 3e-14
Os01g0780900 Conserved hypothetical protein 67 2e-11
>Os01g0567200 Conserved hypothetical protein
Length = 272
Score = 367 bits (941), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/255 (76%), Positives = 194/255 (76%)
Query: 18 EIRRPVDESTEKAGSXXXXXXXXXXXPGEAGSXXXXXXXXXXXXXXXXPDESTEKAGSLW 77
EIRRPVDESTEKAGS PGEAGS PDESTEKAGSLW
Sbjct: 18 EIRRPVDESTEKAGSLRRRRLHRRRRPGEAGSLRRCQLLRRRCPGCRRPDESTEKAGSLW 77
Query: 78 QCQWLXXXXXXXXXXXXXXXXXSFLRPASPGQXXXXXXXXXXXXXXXXXWRRFCQCMLEC 137
QCQWL SFLRPASPGQ WRRFCQCMLEC
Sbjct: 78 QCQWLRRRCPGGRRPVPRDGGGSFLRPASPGQAVARSLLLVVLDSLLARWRRFCQCMLEC 137
Query: 138 FLYHGSISQVSQDFSPPFSHVDPRRQQFVCHHSSSSVGLGIWMWAPSSSVFPTSSFHARF 197
FLYHGSISQVSQDFSPPFSHVDPRRQQFVCHHSSSSVGLGIWMWAPSSSVFPTSSFHARF
Sbjct: 138 FLYHGSISQVSQDFSPPFSHVDPRRQQFVCHHSSSSVGLGIWMWAPSSSVFPTSSFHARF 197
Query: 198 VVRVELTLLRFNDELRGLLLLSPVMPPQNLRLSSKPPFCAVFVEATGWGLPVCQACCTPK 257
VVRVELTLLRFNDELRGLLLLSPVMPPQNLRLSSKPPFCAVFVEATGWGLPVCQACCTPK
Sbjct: 198 VVRVELTLLRFNDELRGLLLLSPVMPPQNLRLSSKPPFCAVFVEATGWGLPVCQACCTPK 257
Query: 258 EAQGCIRRGIAAAPC 272
EAQGCIRRGIAAAPC
Sbjct: 258 EAQGCIRRGIAAAPC 272
>Os01g0108500 Conserved hypothetical protein
Length = 306
Score = 340 bits (872), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 185/256 (72%), Positives = 188/256 (73%), Gaps = 1/256 (0%)
Query: 18 EIRRPVDESTEKAGSXXXXXXXXXX-XPGEAGSXXXXXXXXXXXXXXXXPDESTEKAGSL 76
EIRRPVDESTEKAGS GEAGS PDESTEKAGSL
Sbjct: 18 EIRRPVDESTEKAGSLRRRRRLHRRRQSGEAGSLRRRQLLRRRRPGCHCPDESTEKAGSL 77
Query: 77 WQCQWLXXXXXXXXXXXXXXXXXSFLRPASPGQXXXXXXXXXXXXXXXXXWRRFCQCMLE 136
WQCQWL SFLRPASPGQ WRRFC+CMLE
Sbjct: 78 WQCQWLRHRCPGGRCPVPRDGGGSFLRPASPGQAIAQSLLLVVLDCPLARWRRFCRCMLE 137
Query: 137 CFLYHGSISQVSQDFSPPFSHVDPRRQQFVCHHSSSSVGLGIWMWAPSSSVFPTSSFHAR 196
CFL HGSISQVSQDFSPPF HVDPRRQQF+CHHSS+SVGLGIWMWAPSSSVFPTSSFHA
Sbjct: 138 CFLCHGSISQVSQDFSPPFPHVDPRRQQFICHHSSASVGLGIWMWAPSSSVFPTSSFHAG 197
Query: 197 FVVRVELTLLRFNDELRGLLLLSPVMPPQNLRLSSKPPFCAVFVEATGWGLPVCQACCTP 256
FVVRVELTLLRFNDELRGLLLLSPVM PQNLRLSSKPPFCAVFVEATGW LPVCQACCTP
Sbjct: 198 FVVRVELTLLRFNDELRGLLLLSPVMLPQNLRLSSKPPFCAVFVEATGWRLPVCQACCTP 257
Query: 257 KEAQGCIRRGIAAAPC 272
KEAQGCIRRGIAAAPC
Sbjct: 258 KEAQGCIRRGIAAAPC 273
>Os08g0195400 Conserved hypothetical protein
Length = 283
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 65/119 (54%), Gaps = 2/119 (1%)
Query: 154 PFSHVDPRRQQFVCHHSSSSVGLGIWMWAPSSSVFPTSSFHARFVVRVELTLLRFNDELR 213
P V P R+QF+ SS+ G W+W PS S F S HA + +RVEL LLRF ELR
Sbjct: 149 PTLCVVPSREQFIRQWLCSSLLQGGWIWGPSPSSFLGSCIHAGWAIRVELMLLRFKGELR 208
Query: 214 GLLLLSPV-MPPQNLRLSSKPPFCAVFVEATGWGLPVCQACCTPKEAQGCIRRGIAAAP 271
G + LSPV + P++ C E GLPV QA C KE QG RRG AAAP
Sbjct: 209 GEVWLSPVKLTPKSTAQQQISNLCR-LCEGVRRGLPVRQAVCMSKETQGSNRRGFAAAP 266
>Os03g0629800 Conserved hypothetical protein
Length = 99
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 35/38 (92%), Positives = 36/38 (94%)
Query: 235 FCAVFVEATGWGLPVCQACCTPKEAQGCIRRGIAAAPC 272
FCAVFVEATGWGLPVC+ACCTPKEAQGCIR GI AAPC
Sbjct: 12 FCAVFVEATGWGLPVCRACCTPKEAQGCIRHGIIAAPC 49
>Os02g0265300 Conserved hypothetical protein
Length = 251
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
Query: 162 RQQFVCHHSSSSVGLGIWMWAPSSSVFPTSSFHARFVVRVELTLLRFNDELRGLLLLSPV 221
R+QF+ SS+ G W+W PSSS+ P S HA +RVEL LLRFN ELRG + LSPV
Sbjct: 103 REQFIRRWLCSSLHQGGWIWDPSSSLSPGSGIHAGCAIRVELKLLRFNGELRGEVWLSPV 162
Query: 222 -MPPQNLRLSSKPPFCAVFVEATGWGLPVCQACCTPKEAQGCIRRGIAAAPC 272
+PP++ C+ F GL V QA C KE QGC G AAAPC
Sbjct: 163 KLPPKSTAQQQISNLCS-FCGGDRRGLTVRQAVCMLKETQGCNCHGFAAAPC 213
>Os01g0780900 Conserved hypothetical protein
Length = 349
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 163 QQFVCHHSSSSVGLGIWMWAPSSSV-FPTSSFHARFVVRVELTLLRFNDELRGLLLLSPV 221
Q+ +C HSS+S L + + SS + FP H FV+RVEL DE RG LLSPV
Sbjct: 204 QKLICSHSSASS-LKVGCSSDSSILLFPNRRNHVGFVIRVELGPP---DEPRGDPLLSPV 259
Query: 222 MPPQNLRLSSKPPFCAVFVEATGWGLPVCQACCTPKEAQGCIRRGIAAAPC 272
+ F + WGL VCQA CT EAQG RRG AA PC
Sbjct: 260 THTPKSTAQHQTSVLCRFRGGSRWGLTVCQADCTSFEAQGSSRRGFAADPC 310
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.135 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,517,005
Number of extensions: 268704
Number of successful extensions: 613
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 606
Number of HSP's successfully gapped: 6
Length of query: 272
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 173
Effective length of database: 11,866,615
Effective search space: 2052924395
Effective search space used: 2052924395
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 155 (64.3 bits)