BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0265800 Os01g0265800|AK099896
(524 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0265800 Similar to Sulfated surface glycoprotein 185 p... 640 0.0
Os01g0614500 RNA-binding region RNP-1 (RNA recognition moti... 173 3e-43
Os02g0602600 RNA-binding region RNP-1 (RNA recognition moti... 134 2e-31
Os11g0603300 124 1e-28
Os02g0755400 Similar to RNA recognition motif-containing pr... 89 1e-17
Os06g0622900 Similar to RNA-binding region containing prote... 80 4e-15
Os02g0714000 Similar to Yarrowia lipolytica chromosome C of... 76 7e-14
Os03g0286500 Similar to RNA-binding region containing prote... 75 1e-13
Os01g0958500 Similar to RNA binding protein-like 69 1e-11
Os03g0245900 68 2e-11
>Os01g0265800 Similar to Sulfated surface glycoprotein 185 precursor (SSG 185)
Length = 524
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/478 (71%), Positives = 343/478 (71%)
Query: 1 EPQTPHHTAPLSPPLHSRRNPSPKVPPRLALAVAMGKKRKLDSKSPXXXXXXXXXXXXXX 60
EPQTPHHTAPLSPPLHSRRNPSPKVPPRLALAVAMGKKRKLDSKSP
Sbjct: 1 EPQTPHHTAPLSPPLHSRRNPSPKVPPRLALAVAMGKKRKLDSKSPAAARSAAARAAAAA 60
Query: 61 XXXXXXXXXXEPSSQPEALAEDPAPSSQPLGLSSEGAGERMMSRXXXXXXXXXXXXXXXX 120
EPSSQPEALAEDPAPSSQPLGLSSEGAGERMMSR
Sbjct: 61 AAAAAAAAVAEPSSQPEALAEDPAPSSQPLGLSSEGAGERMMSREAGGGEEEEVEEVEVE 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXRDADSIQALLNSFPKDQLVELLSAAALSHEDVLTAVH 180
RDADSIQALLNSFPKDQLVELLSAAALSHEDVLTAVH
Sbjct: 121 EEVEVDEDEDGEGEGEEEEEAAERDADSIQALLNSFPKDQLVELLSAAALSHEDVLTAVH 180
Query: 181 RAADADPALRKIFVHGLGWDATAETLTEAFSAYGEIEDLRVVTDRATGKCKGYGFILFSR 240
RAADADPALRKIFVHGLGWDATAETLTEAFSAYGEIEDLRVVTDRATGKCKGYGFILFSR
Sbjct: 181 RAADADPALRKIFVHGLGWDATAETLTEAFSAYGEIEDLRVVTDRATGKCKGYGFILFSR 240
Query: 241 RSGARAALREPQKKIGNRTTACQLASVGPVPPGGMATNXXXXXXXXXXXXXXXXXSEYTQ 300
RSGARAALREPQKKIGNRTTACQLASVGPVPPGGMATN SEYTQ
Sbjct: 241 RSGARAALREPQKKIGNRTTACQLASVGPVPPGGMATNPAPAVAPAPAQLALPPVSEYTQ 300
Query: 301 RKIFVSNVGADIDPQKLLQFFSKYGEIEEGPLGLDKVTGKPKGFALFVYKTLDSAKKALQ 360
RKIFVSNVGADIDPQKLLQFFSKYGEIEEGPLGLDKVTGKPKGFALFVYKTLDSAKKALQ
Sbjct: 301 RKIFVSNVGADIDPQKLLQFFSKYGEIEEGPLGLDKVTGKPKGFALFVYKTLDSAKKALQ 360
Query: 361 EPHKQFEGVVLHCQKAIDGPKPNKXXXXXXXXXXXXXXXXXXXXXXXXHSHSLPGAAVGG 420
EPHKQFEGVVLHCQKAIDGPKPNK HSHSLPGAAVGG
Sbjct: 361 EPHKQFEGVVLHCQKAIDGPKPNKGGGLGGLYGAGTSGGRKGAGGYGAHSHSLPGAAVGG 420
Query: 421 HVMPSPVSSLTSXXXXXXXXXXXXXXXQALTAILASQXXXXXXXXXXXXXXXXSGLPN 478
HVMPSPVSSLTS QALTAILASQ SGLPN
Sbjct: 421 HVMPSPVSSLTSLPGVAGGPGVNPALGQALTAILASQGGGLGLNNILGVGANGSGLPN 478
>Os01g0614500 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 447
Score = 173 bits (439), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 101/232 (43%), Positives = 138/232 (59%), Gaps = 10/232 (4%)
Query: 147 DSIQALLNSFPKDQLVELLSAAALSHEDVLTAVHRAADADPALRKIFVHGLGWDATAETL 206
D + L+ +DQL ++ + AAL+ L AV AAD DPALRK+FV GLGW+ +++L
Sbjct: 33 DDLLRLVEPLSRDQLADIAATAALASGVALDAVRAAADRDPALRKLFVRGLGWETNSDSL 92
Query: 207 TEAFSAYGEIEDLRVVTDRATGKCKGYGFILFSRRSGARAALREPQKKIGNRTTACQLAS 266
FSA+G++E+ V+TD++TG+ KGYGF+ F A AL+EP KKI R T QLA
Sbjct: 93 RAIFSAFGDLEEAVVITDKSTGRSKGYGFVTFRHADSAVLALKEPSKKIDGRMTVTQLA- 151
Query: 267 VGPVPPGGMATNXXXXXXXXXXXXXXXXXSEYTQRKIFVSNVGADIDPQKLLQFFSKYGE 326
A ++ + RKIFV NV AD+ ++LL F+ YGE
Sbjct: 152 ---------AAGAAGGASGGAAGAGGAPAADVSLRKIFVGNVPADMPSERLLAHFAAYGE 202
Query: 327 IEEGPLGLDKVTGKPKGFALFVYKTLDSAKKALQEPHKQFEGVVLHCQKAID 378
IEEGPLG DK TGK +GFALFVYKT + A+ +L + K +G L C+ AI+
Sbjct: 203 IEEGPLGFDKQTGKFRGFALFVYKTPEGAQASLVDSVKVIDGHQLVCKLAIE 254
>Os02g0602600 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 415
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 125/224 (55%), Gaps = 30/224 (13%)
Query: 156 FPKDQLVELLSAAALSHEDVLTAVHRAADADPALRKIFVHGLGWDATAETLTEAFSAYGE 215
F +++L++LL A L + + + + A++D A R++FVHGL TA + AF+ +G
Sbjct: 70 FTRNELLDLLVEACLRNPALRSRLAATAESDAAHRRLFVHGLSPGVTAAAMAAAFAPFGA 129
Query: 216 IEDLRVVTDRATGKCKGYGFILFSRRSGARAALREPQKK---IGNRTTACQLASVGPVPP 272
+++ V DRATG+C+GYGF+ F RRS AR AL +G R ACQLAS+GP P
Sbjct: 130 LDECHAVADRATGRCRGYGFVTFRRRSAARRALAADASSRLAVGGRPVACQLASLGPTSP 189
Query: 273 GGMATNXXXXXXXXXXXXXXXXXSEYTQRKIFVSNVGADIDPQKLLQFFSKYGEIEEGPL 332
RK+FV NV A +L + FS++GEIE GPL
Sbjct: 190 ---------------------------DRKLFVDNVPARAAHDELRRLFSRFGEIEAGPL 222
Query: 333 GLDKVTGKPKGFALFVYKTLDSAKKALQEPHKQFEGVVLHCQKA 376
G D+ TG+ +G+A+F YK + KAL+E F+G LHC++A
Sbjct: 223 GADRATGQFRGYAIFFYKYPEGLTKALEERKVVFDGCELHCRRA 266
>Os11g0603300
Length = 415
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 109/204 (53%), Gaps = 20/204 (9%)
Query: 175 VLTAVHRAADADPALRKIFVHGLGWDATAETLTEAFSAYGEIEDLRVVTDRATGKCKGYG 234
+L + AADA P+ R++FVHGL A A L AFS +G + + VV RATG CKG+G
Sbjct: 73 LLARIRAAADASPSHRRLFVHGLPPHADAPALAAAFSRFGPLAECDVVARRATGACKGFG 132
Query: 235 FILFSRRSGARAALREPQKKIGNRTTACQLASVGPVPPGGMATNXXXXXXXXXXXXXXXX 294
F+ F R+ AR ALRE +G GG+A
Sbjct: 133 FVTFQSRAAARRALRE----VGR---------------GGVAV-AGRAVSAQYATAGAAA 172
Query: 295 XSEYTQRKIFVSNVGADIDPQKLLQFFSKYGEIEEGPLGLDKVTGKPKGFALFVYKTLDS 354
+ R+++V+NV ++L FF+ +GE+E GP G D TG +G ALFVY+ +
Sbjct: 173 AASAAGRRVYVTNVAPGASAERLRAFFAGFGELEGGPFGFDADTGSSRGCALFVYRAAED 232
Query: 355 AKKALQEPHKQFEGVVLHCQKAID 378
A++AL+EP++ FEG LHCQ A D
Sbjct: 233 ARRALEEPYRVFEGRTLHCQLAAD 256
>Os02g0755400 Similar to RNA recognition motif-containing protein SEB-4
Length = 176
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 52/90 (57%)
Query: 180 HRAADADPALRKIFVHGLGWDATAETLTEAFSAYGEIEDLRVVTDRATGKCKGYGFILFS 239
HR D L K+FV GL W+ ++ L + F YGEI + V+TDR T + KGYGF+ F
Sbjct: 36 HRTRFGDTTLTKVFVGGLAWETPSKGLQDHFQQYGEILEAVVITDRETSRSKGYGFVTFR 95
Query: 240 RRSGARAALREPQKKIGNRTTACQLASVGP 269
AR A+R P IG R C +AS+GP
Sbjct: 96 EPESAREAVRNPNPTIGGRRANCNIASMGP 125
>Os06g0622900 Similar to RNA-binding region containing protein 1 (HSRNASEB)
(ssDNA binding protein SEB4) (CLL-associated antigen
KW-5). Splice isoform 2
Length = 275
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 47/84 (55%)
Query: 185 ADPALRKIFVHGLGWDATAETLTEAFSAYGEIEDLRVVTDRATGKCKGYGFILFSRRSGA 244
D K+FV GL W+ +E L F AYGEI + V+TDRATG+ KGYGF+ F A
Sbjct: 28 GDTTYTKVFVGGLAWETRSEGLRAHFEAYGEILEAVVITDRATGRSKGYGFVTFRDPDSA 87
Query: 245 RAALREPQKKIGNRTTACQLASVG 268
R A +P I R C LA +G
Sbjct: 88 RMACMDPYPVIDGRRANCNLAILG 111
>Os02g0714000 Similar to Yarrowia lipolytica chromosome C of strain CLIB99 of
Yarrowia lipolytica
Length = 287
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 47/84 (55%)
Query: 185 ADPALRKIFVHGLGWDATAETLTEAFSAYGEIEDLRVVTDRATGKCKGYGFILFSRRSGA 244
D K+FV GL W+ T+E L + +GEI + V+TDR +G+ KGYGF+ F A
Sbjct: 32 GDTTYTKVFVGGLAWETTSERLRRFYDRFGEILEAVVITDRHSGRSKGYGFVTFRDPESA 91
Query: 245 RAALREPQKKIGNRTTACQLASVG 268
R A +P I R C LAS+G
Sbjct: 92 RKACEDPTPVIDGRRANCNLASLG 115
>Os03g0286500 Similar to RNA-binding region containing protein 1 (HSRNASEB)
(ssDNA binding protein SEB4) (CLL-associated antigen
KW-5). Splice isoform 2
Length = 310
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%)
Query: 182 AADADPALRKIFVHGLGWDATAETLTEAFSAYGEIEDLRVVTDRATGKCKGYGFILFSRR 241
AA D L K+FV GL W+ +TL E F +G+I + +++D+ TG+ KGYGF+ F
Sbjct: 25 AAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFKEA 84
Query: 242 SGARAALREPQKKIGNRTTACQLASVGPVP 271
A+ A + I R C LAS+G P
Sbjct: 85 DAAKKACEDATPVINGRRANCNLASLGAKP 114
>Os01g0958500 Similar to RNA binding protein-like
Length = 310
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 44/83 (53%)
Query: 186 DPALRKIFVHGLGWDATAETLTEAFSAYGEIEDLRVVTDRATGKCKGYGFILFSRRSGAR 245
D L K+FV GL W+ E + F +G+I + V+TD+ TG+ KGYGF+ F A
Sbjct: 17 DTTLTKVFVGGLAWETQKEGMRGYFEQFGDILEAVVITDKNTGRSKGYGFVTFREPEAAM 76
Query: 246 AALREPQKKIGNRTTACQLASVG 268
A +P I R C LA +G
Sbjct: 77 KACFDPYPVIDGRRANCNLAYLG 99
>Os03g0245900
Length = 101
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 46/85 (54%)
Query: 184 DADPALRKIFVHGLGWDATAETLTEAFSAYGEIEDLRVVTDRATGKCKGYGFILFSRRSG 243
D D K+FV GL W+ + + F +GEI + V+ D+ TG+ KGYGF+ F G
Sbjct: 2 DGDTTFTKLFVGGLPWETRGDAVRRHFEQFGEIVEAVVIADKHTGRSKGYGFVTFRDPDG 61
Query: 244 ARAALREPQKKIGNRTTACQLASVG 268
A AL++P I R C LA+ G
Sbjct: 62 AARALQDPTPVIDGRRANCNLAAFG 86
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.131 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,603,087
Number of extensions: 429682
Number of successful extensions: 1905
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 1905
Number of HSP's successfully gapped: 11
Length of query: 524
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 419
Effective length of database: 11,553,331
Effective search space: 4840845689
Effective search space used: 4840845689
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)