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Os02g0602600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.5 (0.0199) R2 : 0.00912
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0859 (0.0419) R2dN8 : 0.0118 R2N8 : 0.00912
σ : 0.375
deviance : 64.49
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
37.26 0.287 10.4 0.598 0.208 0.523 0.65 0.491 0.172 10.3 0.03965 83 -- --
37.82 0.286 10.4 0.644 0.171 0.488 0.326 -- 0.202 9.01 0.06 77 -- --
38.36 0.288 10.4 0.643 0.285 0.55 -- 0.255 0.215 10.6 0.06 74 -- --
37.68 0.286 10.4 0.638 0.226 0.541 -- -- 0.182 10.6 0.01803 80 -- --
39.77 0.294 10.4 0.671 -- 0.447 -- 0.146 0.264 -- 0.0302 88 -- --
42.76 0.307 10.5 0.592 0.442 -- 0.142 -- 0.144 1.49 -- -- -- --
42.84 0.306 10.5 0.587 0.442 -- -- -- 0.144 1.42 -- -- -- --
38.64 0.29 10.4 0.629 -- 0.407 -- -- 0.177 -- 0.0298 121 -- --
48.6 0.325 10.4 -- 0.169 0.491 -- -- 0.154 9.68 0.1419 77 -- --
54.84 0.346 10.4 0.605 -- -- -- -- 0.153 -- -- -- -- --
51.93 0.337 10.5 -- 0.452 -- -- -- 0.0782 1.47 -- -- -- --
48.95 0.326 10.5 -- -- 0.396 -- -- 0.106 -- 0.05999 100 -- --
64.49 0.375 10.5 -- -- -- -- -- 0.0859 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 33.51 temperature 15.0 270 > th dose independent rect. 17 10
3 33.97 temperature 15.0 270 > th dose independent rect. 7 19
6 34.46 temperature 15.0 270 > th dose independent rect. 8 17
11 34.65 temperature 10.0 270 > th dose dependent rect. 18 9
14 34.80 temperature 15.0 270 > th dose independent rect. 8 15
17 35.03 radiation 1.0 90 > th dose independent sin 12 NA
18 35.03 temperature 15.0 270 > th dose independent rect. 17 21
20 35.07 temperature 15.0 270 > th dose independent rect. 18 19
22 35.12 radiation 1.0 90 < th dose dependent sin 13 NA
27 35.28 humidity 50.0 270 > th dose independent rect. 17 10
29 35.31 temperature 15.0 10 > th dose independent rect. 9 20
33 35.35 radiation 30.0 270 < th dose dependent rect. 17 10
35 35.36 radiation 10.0 270 < th dose independent rect. 17 10
40 35.38 temperature 15.0 10 > th dose independent rect. 20 9
41 35.40 wind 9.0 270 < th dose independent rect. 17 10
46 35.42 temperature 10.0 270 > th dose independent rect. 3 14
47 35.42 atmosphere 1015.0 270 < th dose independent rect. 3 14
48 35.44 temperature 10.0 10 > th dose dependent rect. 20 9
52 35.49 radiation 1.0 90 < th dose independent sin 13 NA
57 35.51 precipitation 0.1 270 < th dose independent rect. 3 14
59 35.51 precipitation 0.1 270 < th dose dependent rect. 3 14
61 35.52 radiation 1.0 90 > th dose independent rect. 15 17
70 35.65 temperature 15.0 270 > th dose independent rect. 16 23
71 35.66 atmosphere 995.0 270 > th dose independent rect. 17 10
80 35.74 temperature 15.0 10 > th dose independent rect. 9 18
81 35.75 wind 9.0 270 < th dose independent rect. 3 14
82 35.76 precipitation 0.1 270 < th dose independent rect. 17 10
85 35.76 precipitation 0.1 270 < th dose dependent rect. 17 10
122 36.00 temperature 15.0 270 > th dose independent rect. 7 6
123 36.01 atmosphere 1000.0 270 > th dose independent rect. 3 4
125 36.03 temperature 15.0 90 > th dose independent rect. 9 6
126 36.03 radiation 1.0 270 > th dose independent rect. 7 6
128 36.05 radiation 40.0 90 < th dose independent rect. 15 18
132 36.07 atmosphere 1010.0 270 < th dose independent rect. 18 8
134 36.08 wind 1.0 90 > th dose independent rect. 9 6
160 36.20 temperature 30.0 270 < th dose independent rect. 18 9
161 36.20 wind 9.0 270 < th dose independent rect. 7 19
162 36.20 humidity 50.0 270 > th dose independent rect. 7 19
166 36.22 temperature 20.0 270 > th dose independent rect. 13 5
167 36.22 atmosphere 995.0 270 > th dose dependent rect. 2 5
183 36.25 atmosphere 1010.0 10 < th dose independent rect. 20 9
187 36.26 wind 7.0 270 < th dose independent rect. 7 6
190 36.26 atmosphere 995.0 270 > th dose independent rect. 3 14
191 36.27 precipitation 0.1 90 < th dose independent rect. 9 6
194 36.27 precipitation 0.1 90 < th dose dependent rect. 9 6
198 36.28 atmosphere 1015.0 90 < th dose independent rect. 9 6
199 36.28 precipitation 0.1 270 < th dose independent rect. 7 6
201 36.28 temperature 10.0 90 > th dose independent rect. 15 18
202 36.28 precipitation 0.1 270 < th dose dependent rect. 7 6
203 36.29 temperature 20.0 270 > th dose independent rect. 14 3
204 36.29 humidity 50.0 270 > th dose independent rect. 7 6
212 36.31 wind 9.0 90 < th dose independent rect. 9 6
214 36.31 atmosphere 995.0 270 > th dose independent rect. 7 6
215 36.31 atmosphere 1015.0 270 < th dose independent rect. 7 6
218 36.31 temperature 10.0 270 > th dose independent rect. 13 18
234 36.35 atmosphere 995.0 90 > th dose independent rect. 9 6
241 36.37 wind 7.0 270 < th dose independent rect. 2 5
242 36.37 humidity 90.0 90 < th dose independent rect. 9 6
243 36.37 precipitation 0.1 270 < th dose independent rect. 13 18
245 36.37 precipitation 0.1 270 < th dose dependent rect. 13 18
246 36.38 radiation 20.0 270 < th dose independent rect. 2 5
251 36.39 temperature 10.0 270 > th dose independent rect. 2 5
253 36.39 temperature 30.0 270 < th dose independent rect. 2 5
254 36.39 humidity 50.0 270 > th dose independent rect. 2 5
257 36.39 atmosphere 1015.0 270 < th dose independent rect. 2 5
264 36.40 precipitation 0.1 270 < th dose independent rect. 2 5
268 36.40 precipitation 0.1 270 < th dose dependent rect. 2 5
269 36.41 wind 1.0 10 > th dose independent rect. 9 7
297 36.45 humidity 50.0 90 > th dose independent rect. 9 6
299 36.45 wind 9.0 270 < th dose independent rect. 13 18
301 36.46 radiation 1.0 90 > th dose independent rect. 9 6
302 36.46 temperature 10.0 10 > th dose independent rect. 9 7
304 36.46 atmosphere 1015.0 10 < th dose independent rect. 9 7
305 36.46 precipitation 0.1 10 < th dose independent rect. 9 7
308 36.46 temperature 10.0 10 > th dose independent rect. 16 17
311 36.46 precipitation 0.1 10 < th dose dependent rect. 9 7
324 36.48 precipitation 0.1 270 < th dose independent rect. 7 19
325 36.48 radiation 40.0 270 < th dose dependent rect. 3 4
326 36.48 precipitation 0.1 270 < th dose dependent rect. 7 19
339 36.50 humidity 50.0 270 > th dose dependent rect. 2 5
342 36.51 wind 9.0 10 < th dose independent rect. 9 7
358 36.53 temperature 30.0 30 < th dose independent rect. 9 20
361 36.54 temperature 15.0 1440 > th dose independent rect. 10 6
364 36.54 wind 9.0 10 < th dose independent rect. 16 17
378 36.58 atmosphere 995.0 10 > th dose independent rect. 9 7
379 36.58 precipitation 0.1 10 < th dose independent rect. 16 17
380 36.58 temperature 30.0 270 < th dose independent rect. 7 20
383 36.58 precipitation 0.1 10 < th dose dependent rect. 16 17
386 36.59 wind 1.0 270 > th dose independent rect. 13 18
403 36.63 atmosphere 995.0 90 > th dose independent rect. 15 18
445 36.66 atmosphere 995.0 10 > th dose dependent rect. 5 4
455 36.67 atmosphere 995.0 270 > th dose independent rect. 7 19
486 36.69 atmosphere 1000.0 90 > th dose independent rect. 5 14
502 36.71 radiation 1.0 10 > th dose independent rect. 9 6
504 36.71 temperature 10.0 1440 > th dose independent rect. 16 18
507 36.71 atmosphere 1015.0 270 < th dose independent rect. 18 19
510 36.72 temperature 15.0 1440 > th dose independent rect. 16 5
530 36.75 temperature 30.0 30 < th dose independent rect. 18 11
531 36.75 atmosphere 995.0 270 > th dose independent rect. 13 18
552 36.78 temperature 15.0 1440 > th dose independent rect. 16 3
554 36.78 atmosphere 1000.0 10 > th dose independent rect. 5 15
562 36.79 wind 1.0 270 > th dose independent rect. 2 5
564 36.79 radiation 20.0 10 < th dose independent rect. 5 14
567 36.79 atmosphere 995.0 10 > th dose independent rect. 16 17
569 36.79 temperature 30.0 90 < th dose independent rect. 9 18
594 36.80 temperature 15.0 10 > th dose independent rect. 20 19
605 36.81 humidity 50.0 270 > th dose independent rect. 18 19
609 36.82 temperature 10.0 270 > th dose independent rect. 13 5
612 36.82 atmosphere 1010.0 270 < th dose independent rect. 13 5
628 36.83 atmosphere 995.0 270 > th dose independent rect. 18 19
631 36.84 atmosphere 1000.0 10 > th dose independent rect. 5 4
650 36.84 wind 9.0 270 < th dose independent rect. 18 19
666 36.86 wind 9.0 10 < th dose independent rect. 9 20
674 36.88 precipitation 0.1 270 < th dose independent rect. 13 5
682 36.88 precipitation 0.1 270 < th dose dependent rect. 13 5
688 36.89 wind 9.0 270 < th dose independent rect. 17 21
689 36.89 wind 9.0 270 < th dose dependent rect. 3 4
691 36.90 wind 1.0 270 > th dose independent rect. 14 3
696 36.91 temperature 10.0 270 > th dose independent rect. 14 3
698 36.91 atmosphere 1010.0 270 < th dose independent rect. 14 3
700 36.91 precipitation 0.1 270 < th dose independent rect. 14 3
706 36.91 humidity 90.0 10 < th dose independent rect. 9 6
715 36.91 precipitation 0.1 270 < th dose dependent rect. 14 3
717 36.91 wind 9.0 270 < th dose dependent rect. 7 6
741 36.92 radiation 40.0 10 < th dose dependent rect. 5 14
784 36.97 temperature 20.0 270 > th dose independent rect. 15 1
786 36.97 precipitation 0.1 10 < th dose independent rect. 5 4
787 36.97 wind 1.0 270 > th dose independent rect. 13 5
795 36.97 temperature 10.0 270 > th dose dependent rect. 3 4
796 36.97 precipitation 0.1 10 < th dose dependent rect. 5 4
799 36.97 wind 9.0 270 < th dose dependent rect. 7 19
801 36.98 wind 7.0 10 < th dose independent rect. 5 4
803 36.98 temperature 10.0 10 > th dose independent rect. 5 4
805 36.98 temperature 30.0 10 < th dose independent rect. 5 4
806 36.98 humidity 50.0 10 > th dose independent rect. 5 4
809 36.98 atmosphere 1015.0 10 < th dose independent rect. 5 4
810 36.98 wind 9.0 270 < th dose independent rect. 13 5
831 36.99 wind 1.0 270 > th dose independent rect. 7 19
838 37.00 precipitation 0.1 10 < th dose independent rect. 9 20
841 37.00 temperature 10.0 10 > th dose dependent rect. 5 4
845 37.00 precipitation 0.1 10 < th dose dependent rect. 9 20
895 37.03 atmosphere 995.0 10 > th dose independent rect. 9 20
896 37.03 atmosphere 995.0 270 > th dose independent rect. 17 21
902 37.04 radiation 30.0 270 < th dose independent rect. 23 9
905 37.04 atmosphere 1015.0 270 < th dose independent rect. 7 19
908 37.05 wind 9.0 270 < th dose independent rect. 14 3
916 37.05 precipitation 0.1 270 < th dose independent rect. 18 19
920 37.05 precipitation 0.1 270 < th dose dependent rect. 18 19
922 37.06 radiation 30.0 90 < th dose independent rect. 15 4
930 37.06 temperature 30.0 10 < th dose independent rect. 20 9
931 37.06 humidity 50.0 10 > th dose independent rect. 20 9
934 37.06 atmosphere 995.0 10 > th dose independent rect. 20 9
935 37.06 radiation 1.0 10 < th dose independent rect. 20 9
940 37.06 wind 9.0 270 < th dose independent rect. 8 15
941 37.06 temperature 10.0 10 > th dose independent rect. 5 15
943 37.06 atmosphere 1015.0 10 < th dose independent rect. 5 15
947 37.06 radiation 10.0 10 < th dose dependent rect. 20 9
954 37.07 radiation 40.0 90 < th dose independent rect. 4 15
955 37.07 atmosphere 995.0 90 > th dose independent rect. 9 18
959 37.07 temperature 10.0 270 > th dose dependent rect. 18 18
961 37.08 temperature 30.0 270 < th dose independent rect. 7 7
962 37.08 radiation 1.0 270 < th dose independent rect. 3 7
967 37.08 wind 9.0 270 < th dose dependent rect. 17 9
988 37.09 humidity 50.0 10 > th dose independent rect. 16 17
992 37.09 temperature 10.0 270 > th dose dependent rect. 14 3