BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0210400 Os01g0210400|Os01g0210400
(499 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0210400 Protein of unknown function DUF616 family protein 916 0.0
Os05g0531500 Protein of unknown function DUF616 family protein 191 1e-48
Os06g0724300 Protein of unknown function DUF616 family protein 172 6e-43
Os11g0198100 Protein of unknown function DUF616 family protein 137 2e-32
Os01g0749100 Protein of unknown function DUF616 family protein 85 1e-16
>Os01g0210400 Protein of unknown function DUF616 family protein
Length = 499
Score = 916 bits (2368), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/499 (89%), Positives = 448/499 (89%)
Query: 1 MGWXXXXXXXXXXXXXQSKXXXXXXXXXXXXXXXXXYVSFSDPASAASRCLVFLPFRXXX 60
MGW QSK YVSFSDPASAASRCLVFLPFR
Sbjct: 1 MGWVRMRVRVRSPPVMQSKLLCLSLLYLLTTLPLALYVSFSDPASAASRCLVFLPFRSSA 60
Query: 61 XXXXXXXXLFEYPREYGEHKHAIPATRALCSDPAVFSGRSLSVREGHYKTVLEEINKFCR 120
LFEYPREYGEHKHAIPATRALCSDPAVFSGRSLSVREGHYKTVLEEINKFCR
Sbjct: 61 PSSAASAALFEYPREYGEHKHAIPATRALCSDPAVFSGRSLSVREGHYKTVLEEINKFCR 120
Query: 121 NLSASPYAKPALRYQNGRRNSFAGNLSTVERRSFFNHTDSAVEIPCGFFKEFPVRESGDF 180
NLSASPYAKPALRYQNGRRNSFAGNLSTVERRSFFNHTDSAVEIPCGFFKEFPVRESGDF
Sbjct: 121 NLSASPYAKPALRYQNGRRNSFAGNLSTVERRSFFNHTDSAVEIPCGFFKEFPVRESGDF 180
Query: 181 FGQFAFFIEEKILVAHRLAMEKCNGVVVASAIFNDHDKIRQPKGLGSETLRTVCFFMFID 240
FGQFAFFIEEKILVAHRLAMEKCNGVVVASAIFNDHDKIRQPKGLGSETLRTVCFFMFID
Sbjct: 181 FGQFAFFIEEKILVAHRLAMEKCNGVVVASAIFNDHDKIRQPKGLGSETLRTVCFFMFID 240
Query: 241 DATHRVLASHNILAGERGEAGTIGAWRVARLVAGAGGDHRLPYENPAMNCVIVKYLLHRL 300
DATHRVLASHNILAGERGEAGTIGAWRVARLVAGAGGDHRLPYENPAMNCVIVKYLLHRL
Sbjct: 241 DATHRVLASHNILAGERGEAGTIGAWRVARLVAGAGGDHRLPYENPAMNCVIVKYLLHRL 300
Query: 301 FPNARFSVWVDAKMQLTVDPLLLVHSFVAGKGADMAVSKHPFNLHTMEEAIATARWRKWG 360
FPNARFSVWVDAKMQLTVDPLLLVHSFVAGKGADMAVSKHPFNLHTMEEAIATARWRKWG
Sbjct: 301 FPNARFSVWVDAKMQLTVDPLLLVHSFVAGKGADMAVSKHPFNLHTMEEAIATARWRKWG 360
Query: 361 DVDSIREQMETYCRNGLQPWSPIKLPYPSDVPDTAIIIRRHGLASDLFSCLLFNELEAFN 420
DVDSIREQMETYCRNGLQPWSPIKLPYPSDVPDTAIIIRRHGLASDLFSCLLFNELEAFN
Sbjct: 361 DVDSIREQMETYCRNGLQPWSPIKLPYPSDVPDTAIIIRRHGLASDLFSCLLFNELEAFN 420
Query: 421 PRDQLAFAYVRDQMSPKVIMNMFDVEVFEQIAVEYRHNLKRXXXXXXXXXXITRMASSGD 480
PRDQLAFAYVRDQMSPKVIMNMFDVEVFEQIAVEYRHNLKR ITRMASSGD
Sbjct: 421 PRDQLAFAYVRDQMSPKVIMNMFDVEVFEQIAVEYRHNLKRGNGGAGGKQGITRMASSGD 480
Query: 481 IAGSSCERYLLKMWGETTE 499
IAGSSCERYLLKMWGETTE
Sbjct: 481 IAGSSCERYLLKMWGETTE 499
>Os05g0531500 Protein of unknown function DUF616 family protein
Length = 575
Score = 191 bits (484), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 116/298 (38%), Positives = 167/298 (56%), Gaps = 25/298 (8%)
Query: 142 FAGNLSTVERRSFFNHTDSAVEIPCGFFK-EFPVRESGDFFGQFAFFIEEKILVAHRLAM 200
F G+ S +R F+ ++S + + CGF + + P + SG F I + L L M
Sbjct: 209 FGGHPSLEQRNKSFDISES-MTVHCGFVRGKKPGQGSG-------FDINDDDL----LEM 256
Query: 201 EKCNGVVVASAIFNDHDKIRQPKGLGSETLRTVCFFMFIDDATHRVLASHNILAGERGEA 260
EKC +VVASAIF ++D I+ P+ + CF+MF+D+ T + + + L
Sbjct: 257 EKCRELVVASAIFGNYDMIQHPRNASEFSKANACFYMFVDEETEAYVKNSSSLY----RN 312
Query: 261 GTIGAWRVARLVAGAGGDHRLPYENPAMNCVIVKYLLHRLFPNARFSVWVDAKMQLTVDP 320
+G WR+ + LPYE+P I K LLHRLFPN RFSVW+DAK++L VDP
Sbjct: 313 NKVGLWRLVVV-------RNLPYEDPRRTGKIPKLLLHRLFPNVRFSVWIDAKLKLVVDP 365
Query: 321 LLLVHSFVAGKGADMAVSKHPFNLHTMEEAIATARWRKWGDVDSIREQMETYCRNGLQPW 380
LL+ F+ K A A+S+H EEA A K+ D SI Q+E Y GL +
Sbjct: 366 YLLLERFLWRKNATFAISRHYKRFDVFEEAEANKAAGKY-DNASIDYQIEFYRNEGLTYY 424
Query: 381 SPIKLPYPSDVPDTAIIIRRHGLASDLFSCLLFNELEAFNPRDQLAFAYVRDQMSPKV 438
+P KLP SDVP+ +IIR H ++LF+CL FNE++ F RDQ++F+ VRD++ +V
Sbjct: 425 TPAKLPITSDVPEGCVIIREHIPITNLFTCLWFNEVDRFTSRDQISFSTVRDKIRARV 482
>Os06g0724300 Protein of unknown function DUF616 family protein
Length = 468
Score = 172 bits (435), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 102/317 (32%), Positives = 161/317 (50%), Gaps = 27/317 (8%)
Query: 142 FAGNLSTVERRSFFNHTDSAVEIPCGFFKEFPVRESGDFFGQFAFFIEEKILVAHRLAME 201
F G S +R F ++ +++ CGF K D + + V + ++
Sbjct: 126 FGGRQSWKQREDSFK-LNATMKVHCGFMKN----SGADM---------DDVDVKY---IQ 168
Query: 202 KCNGVVVASAIFNDHDKIRQPKGLGSETLRTVCFFMFIDDATHRVLASHNILAGERGEAG 261
KC VVAS IF+ +D QP + + + CF M +D+ + + + + ++
Sbjct: 169 KCK-FVVASGIFDGYDIPHQPSNISIRSQKLFCFLMVVDEVSLDFIEKNTTVKFDKAGGK 227
Query: 262 TIGAWRVARLVAGAGGDHRLPYENPAMNCVIVKYLLHRLFPNARFSVWVDAKMQLTVDPL 321
+G WR+ L HRLP++ P N + K L HRLFP A +S+W+D KM+L VDPL
Sbjct: 228 WVGIWRLITL-------HRLPFDEPRRNGKVPKILTHRLFPQAWYSIWIDGKMELIVDPL 280
Query: 322 LLVHSFVAGKGADMAVSKHPFNLHTMEEAIATARWRKWGDVDSIREQMETYCRNGLQPWS 381
L++ ++ AV+ H + EE A R +++ + QM+ Y G++PW+
Sbjct: 281 LILERYLWRGKYTFAVAVHKHHKSIYEEGDAIKRRKRYAR-PLVDLQMKMYYHEGMEPWN 339
Query: 382 PIKLPYPSDVPDTAIIIRRHGLASDLFSCLLFNELEAFNPRDQLAFAYVRDQMSPKVIMN 441
P K PSDVP+ A++IR H SDLFSCL FNE+ F PRDQL+F YV ++ +
Sbjct: 340 PKKR-MPSDVPEGAVLIREHTTMSDLFSCLWFNEVNLFTPRDQLSFGYVVYRLGDALKFF 398
Query: 442 MFDVEVFEQIAVEYRHN 458
MF + + + +RH
Sbjct: 399 MFPNCEYNSLFILHRHT 415
>Os11g0198100 Protein of unknown function DUF616 family protein
Length = 247
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 129/227 (56%), Gaps = 20/227 (8%)
Query: 225 LGSETLRTVCFFMFIDDATHRVLASHNILAGERGEAGTIGAWRVARLVAGAGGDHRLPYE 284
+ S + +TVCF MF+D+ T R L S + +G IG W++ + +PY
Sbjct: 6 ITSLSKKTVCFAMFLDEITLRTLESE---GQKMDSSGFIGIWKIILI-------KNMPYN 55
Query: 285 NPAMNCVIVKYLLHRLFPNARFSVWVDAKMQLTVDPLLLVHSFVAGKGADMAVSKHPFNL 344
+ I K+L HRLFP++RFS+W+D+K++L DP+L++ F+ G + A+S H ++
Sbjct: 56 DMRRVGKIPKFLAHRLFPSSRFSIWLDSKLRLQNDPILILEYFLWRHGYEYAISNH-YDR 114
Query: 345 HTMEEAIATARWRKWGDVDSIREQMETYCRNGL---QPWSPIKLPYPSDVPDTAIIIRRH 401
H + E +A + + I +Q E Y +GL P P KL PS VP+ + I+R H
Sbjct: 115 HCVWEEVAQNKRLNKFNHTIIDQQFEFYQADGLTKFNPSDPNKL-LPSYVPEGSFIVREH 173
Query: 402 GLASDLFSCLLFNELEAFNPRDQLAFAYVR---DQMSPK--VIMNMF 443
S+LFSCL FNE++ F PRDQL+FAY +M+P+ +NMF
Sbjct: 174 TPMSNLFSCLWFNEVDRFTPRDQLSFAYTYLKLRRMNPEKPFRLNMF 220
>Os01g0749100 Protein of unknown function DUF616 family protein
Length = 203
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 94/183 (51%), Gaps = 11/183 (6%)
Query: 263 IGAWRVARLVAGAGGDHRLPYENPAMNCVIVKYLLHRLFPNARFSVWVDAKMQLTVDPLL 322
IG WR+ + + LP+ + +N I K L HRLFP AR+S+WVD+K Q DP+
Sbjct: 2 IGRWRIIVVRS-------LPFVDQRLNGKIPKMLTHRLFPEARYSIWVDSKYQFRRDPIG 54
Query: 323 LVHSFVAGKGADMAVSKHPFNLHTMEEAIATARWRKWGDVDSIREQMETYCRNGLQPWSP 382
++ + + + A+S+H + +E A + K + + Q+ Y ++G+
Sbjct: 55 VLEALLWRTNSTFAISEHGARSNIYDEGKAIVQKHK-ATPEEVEVQLTQYRKDGMP--DE 111
Query: 383 IKLPYPSDVPDTAIIIRRHGLASDLFSCLLFNELEAFNPRDQLAFAYVRDQMSPKVIMNM 442
+L + + ++I+R ++ F C FNE+ F RDQL+F YV +++ I NM
Sbjct: 112 KRLHGLKALSEASVIVRELAPVTNHFMCAWFNEVVRFTSRDQLSFPYVLWRLNMPGI-NM 170
Query: 443 FDV 445
F V
Sbjct: 171 FTV 173
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.137 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,539,160
Number of extensions: 634119
Number of successful extensions: 1610
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1602
Number of HSP's successfully gapped: 5
Length of query: 499
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 394
Effective length of database: 11,553,331
Effective search space: 4552012414
Effective search space used: 4552012414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 158 (65.5 bits)