BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0207400 Os01g0207400|AK109337
(255 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0207400 Conserved hypothetical protein 496 e-141
Os01g0207200 Similar to Peptide-N4-(N-acetyl-beta-glucosami... 212 2e-55
Os01g0208400 Conserved hypothetical protein 207 8e-54
Os01g0207600 Conserved hypothetical protein 187 5e-48
Os01g0207100 177 7e-45
Os05g0395000 Virulence factor, pectin lyase fold family pro... 103 1e-22
>Os01g0207400 Conserved hypothetical protein
Length = 255
Score = 496 bits (1278), Expect = e-141, Method: Compositional matrix adjust.
Identities = 243/255 (95%), Positives = 243/255 (95%)
Query: 1 YDVELTPFLGKLLDGKEHELGFAVTNAQKSWYVDANLHLWLDPKSVATSGGLVAYDAPKL 60
YDVELTPFLGKLLDGKEHELGFAVTNAQKSWYVDANLHLWLDPKSVATSGGLVAYDAPKL
Sbjct: 1 YDVELTPFLGKLLDGKEHELGFAVTNAQKSWYVDANLHLWLDPKSVATSGGLVAYDAPKL 60
Query: 61 TGKIVSNSSDGIDGQYDATASRNITATGWVRSSRGNITTTFTQRLTFVHTNVVTSQGSSQ 120
TGKIVSNSSDGIDGQYDATASRNITATGWVRSSRGNITTTFTQRLTFVHTNVVTSQGSSQ
Sbjct: 61 TGKIVSNSSDGIDGQYDATASRNITATGWVRSSRGNITTTFTQRLTFVHTNVVTSQGSSQ 120
Query: 121 AINQTTEARTEVVTGDGAHALQLHQSFPLYIFLGGDGSGTSSQRLMRRVAIGFDETRXXX 180
AINQTTEARTEVVTGDGAHALQLHQSFPLYIFLGGDGSGTSSQRLMRRVAIGFDETR
Sbjct: 121 AINQTTEARTEVVTGDGAHALQLHQSFPLYIFLGGDGSGTSSQRLMRRVAIGFDETRAAG 180
Query: 181 XXXXXXXXXTLHNEQTAAAEVVLRDDQVVGASWRMHQVYEYGGSDGGCYSRNVSSVGYDV 240
TLHNEQTAAAEVVLRDDQVVGASWRMHQVYEYGGSDGGCYSRNVSSVGYDV
Sbjct: 181 AGGSSSAASTLHNEQTAAAEVVLRDDQVVGASWRMHQVYEYGGSDGGCYSRNVSSVGYDV 240
Query: 241 LFDHNEESCAGTRRR 255
LFDHNEESCAGTRRR
Sbjct: 241 LFDHNEESCAGTRRR 255
>Os01g0207200 Similar to Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine
amidase A (EC 3.5.1.52) (PNGase A) (Glycopeptide
N-glycosidase) (N-glycanase) [Contains:
Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine
amidase A light chain (PNGase A small chain) (PNGase A
subunit B)
Length = 623
Score = 212 bits (540), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/252 (44%), Positives = 157/252 (62%), Gaps = 6/252 (2%)
Query: 1 YDVELTPFLGKLLDGKEHELGFAVTNAQKSWYVDANLHLWLDPKSVATSGGLVAYDAPKL 60
YD+++TPFLGKLLDGKEH+ GF VTNA WY+DANLHLWLD KS T+G L++Y+A L
Sbjct: 347 YDIDITPFLGKLLDGKEHDFGFGVTNALDVWYIDANLHLWLDHKSEETTGSLISYEAQGL 406
Query: 61 TGKIVSNSSDGIDGQYDATASRNITATGWVRSSRGNITTTFTQRLTFVHTNVVTSQGSSQ 120
+ S S G+DGQ+ +ASR+I+ATG V+SS G +TT F QR ++V++NV + GS Q
Sbjct: 407 VLNVDSGFS-GLDGQFVTSASRHISATGLVKSSYGEVTTNFYQRFSYVNSNVYSKNGSVQ 465
Query: 121 AINQTTEARTEVVTGDGAHAL---QLHQSFPLYIFLGGDGSGTSSQRLMRRVAIGFDETR 177
+NQT +A++ V D L +LHQ FPLY++ G L+ V +G +E +
Sbjct: 466 VVNQTIDAKSGVFAKDALAVLLSEELHQIFPLYVYTGTSDEEADEYTLISHVKLGVNE-K 524
Query: 178 XXXXXXXXXXXXTLHNEQTAAAEVVLRDDQVVGASWRMHQVYEYGGSDGGCYSRNVSSVG 237
+L N Q+A + ++ + VVG HQ Y+Y G+D GCY R+V S
Sbjct: 525 ETSGGKMGFSYNSLRNAQSAHGSMKVKKNLVVGGLGETHQAYKYVGAD-GCYFRDVRSKN 583
Query: 238 YDVLFDHNEESC 249
Y VL DH+ +SC
Sbjct: 584 YTVLSDHSGDSC 595
>Os01g0208400 Conserved hypothetical protein
Length = 616
Score = 207 bits (526), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 122/257 (47%), Positives = 163/257 (63%), Gaps = 12/257 (4%)
Query: 1 YDVELTPFLGKLLDGKEHELGFAVTNAQKSWYVDANLHLWLDPKSVATSGGLVAYDAPKL 60
YD+ELTPFLG LLDG+EHELGFAVT+AQ WYVD NLHLWLDP+S AT+ G+++YDAP L
Sbjct: 332 YDIELTPFLGWLLDGEEHELGFAVTDAQDFWYVDGNLHLWLDPRSAATTAGIISYDAPPL 391
Query: 61 TGKIVSNSSDGIDGQ-YDATASRNITATGWVR-SSRGNITTTFTQRLTFVHTNVVTSQGS 118
K+ + +S G + Y TA R I+A GWV+ SS G IT T+TQR +FV+TN V + +
Sbjct: 392 E-KVTAVASRGPGNEYYQTTAFRRISAAGWVQTSSYGKITATWTQRFSFVNTNQV-REDT 449
Query: 119 SQAINQTTEARTEVVTGDG---AHALQLHQSFPLYIFLGGDGSGTSSQRLMRR--VAIGF 173
Q +NQTT+A + V D A++ + QSFPLYI+ G + TS+ V + F
Sbjct: 450 EQTVNQTTDAYSGVHVTDHAGVAYSQEAEQSFPLYIY-QGQVNQTSNDSFTEETSVQLRF 508
Query: 174 DETRXXXXXXXXXXXXTLHNEQTAAAEVVLRDDQVVGASWRMHQVYEYGGSDGGCYSRNV 233
+E R +L N Q +A +V +++ VG SWR Q Y Y +D GCY R+V
Sbjct: 509 EEER-VAAGRPGFWSRSLSNAQDSAVDVRVQEGDAVGTSWRAAQTYRYEATD-GCYYRDV 566
Query: 234 SSVGYDVLFDHNEESCA 250
+S GY V+ DH +E CA
Sbjct: 567 ASQGYGVVSDHADEVCA 583
>Os01g0207600 Conserved hypothetical protein
Length = 612
Score = 187 bits (476), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 115/268 (42%), Positives = 150/268 (55%), Gaps = 17/268 (6%)
Query: 1 YDVELTPFLGKLLDGKEHELGFAVTNAQKSWYVDANLHLWLDPKSVATSGGLVAYDAPKL 60
YD+ELTPFL KLLDGK HEL FAVTNA WYVD NLHLWLDP + AT+G LV+YDAP+L
Sbjct: 316 YDIELTPFLAKLLDGKAHELAFAVTNAVDVWYVDGNLHLWLDPMTTATTGSLVSYDAPRL 375
Query: 61 TGKIVSNSS----DGIDGQ--YDATASRNITATGWVRS-SRGNITTTFTQRLTFVHTNVV 113
S+++ DG+ + Y TASR I+A GWV S S G ITT TQ F +T
Sbjct: 376 AAVNTSHTTASRFDGLSERYYYHTTASRRISAAGWVESPSHGRITTNATQTFAFENTYAF 435
Query: 114 TSQGSSQAINQTTEARTEVVTGDGAHAL----QLHQSFPLYIFLGGDGSGTSSQRLMRRV 169
GS++ +NQTT A V D A A+ Q H FPLY+ + S ++ + V
Sbjct: 436 AGDGSAETVNQTTVADAAVSATDLAGAVLYSRQAHHDFPLYVDIEAKTSPHAAD-VTYTV 494
Query: 170 AIGFDETRXXX----XXXXXXXXXTLHNEQTAAAEVVLRDDQVVGASWRMHQVYEYGGSD 225
A + ET +L + Q+ A +V +RD V A+W Q Y +D
Sbjct: 495 AREYRETAIAAGRWLSSGTPPRRYSLRDTQSGAVDVEMRDGNAVSATWGTRQTYRLEATD 554
Query: 226 GGCYSRNVSSVGYDVLFDHNEESCAGTR 253
GCY RNV+S GY V D ++E C+ ++
Sbjct: 555 -GCYFRNVTSSGYSVASDESDEVCSDSQ 581
>Os01g0207100
Length = 570
Score = 177 bits (449), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 92/211 (43%), Positives = 133/211 (63%), Gaps = 4/211 (1%)
Query: 1 YDVELTPFLGKLLDGKEHELGFAVTNAQKSWYVDANLHLWLDPKSVATSGGLVAYDAPKL 60
YD+++TPFLGKLLDGKEH GF+VTNA W++DANLH+WLD KS T G LV+Y+APKL
Sbjct: 340 YDIDITPFLGKLLDGKEHNFGFSVTNALDVWFIDANLHIWLDHKSEKTFGSLVSYEAPKL 399
Query: 61 TGKIVSNSSDGIDGQYDATASRNITATGWVRSSRGNITTTFTQRLTFVHTNVVTSQGSSQ 120
T + SN S +DG++ +A R+I+ATGWV SS GN+ TTF QR ++ ++N+ + G+ Q
Sbjct: 400 TLHVDSNFS-ALDGRFVTSAGRHISATGWVNSSYGNVMTTFYQRFSYKNSNLYSKNGTFQ 458
Query: 121 AINQTTEARTEVVTGDGAHAL--QLHQSFPLYIFLGGDGSGTSSQRLMRRVAIGFDETRX 178
+NQT +A++ V ++H++FPLYIF G L+ V +GF+E R
Sbjct: 459 VVNQTIDAKSGVFAKSSVVLFLEEVHRTFPLYIFSGTSDQVGDEYSLVSVVKMGFNE-RR 517
Query: 179 XXXXXXXXXXXTLHNEQTAAAEVVLRDDQVV 209
+L N Q+A + ++ + VV
Sbjct: 518 ISGRKQEFSYISLRNAQSAHGYMKVKKNLVV 548
>Os05g0395000 Virulence factor, pectin lyase fold family protein
Length = 612
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 121/259 (46%), Gaps = 20/259 (7%)
Query: 1 YDVELTPFLGKLLDGKEHELGFAVTNAQKSWYVDANLHLWLDPKSVATSGGLVAYDAPKL 60
YDVELTPFLG L+D HE+G +V + W VDANLHLWLDP + L AY P+L
Sbjct: 340 YDVELTPFLGLLVDSNAHEIGLSVFDGIAEWLVDANLHLWLDPSTSDVHAALGAYQTPRL 399
Query: 61 TGKIVSN-SSDGIDGQYDATASRNITATGWVRSSRGNITTTFTQRLTFVHTNVVTSQGSS 119
KI + S+ ++G++ A R + +GWV+SS GN TT L T G +
Sbjct: 400 --KISRHYSTRLLEGRFKIKAKRKSSFSGWVKSSFGNFTTEVEAELKATSLVEFTGDGRN 457
Query: 120 QAIN--QTTEARTEVVTGDGAHAL---QLHQSFPLYIFL----GGDGSGTSSQRLMRRVA 170
+ ++ E +T + GD + + +PL +F G +G+ + L ++
Sbjct: 458 KTVSLEAKQETKTLIRAGDTRKVIGRVEREAKYPLSLFAETEDGENGTSVVTVSLTHGLS 517
Query: 171 IGFD-ETRXXXXXXXXXXXXTLHNEQTAAAEVVLRDDQVVGASWRMHQVYEYGGSDGGCY 229
+ + ET+ L + Q A +VL D V+ S Q Y + D Y
Sbjct: 518 VETEVETKALESKEK------LDDAQAAQGWMVLLDHDVLNGSVTTTQAYRF-SDDEREY 570
Query: 230 SRNVSSVGYDVLFDHNEES 248
R + V VL D+ ES
Sbjct: 571 ERAIDVVDGAVLSDNVTES 589
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.131 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,567,419
Number of extensions: 347538
Number of successful extensions: 778
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 761
Number of HSP's successfully gapped: 6
Length of query: 255
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 156
Effective length of database: 11,866,615
Effective search space: 1851191940
Effective search space used: 1851191940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)