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Os01g0207200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A (EC 3.5.1.52) (PNGase A) (Glycopeptide N-glycosidase) (N-glycanase) [Contains: Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A light chain (PNGase A small chain) (PNGase A subunit B); Peptide-N4- (N-acetyl-beta-glucosaminyl)asparagine amidase A heavy chain (PNGase A large chain) (PNGase A subunit A)].
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 230.45 | 0.713 | 4.83 | -2.39 | 0.145 | 1.72 | 1.53 | -1.39 | -0.583 | 3.94 | 10.03 | 1351 | -- | -- |
| 233.66 | 0.712 | 4.83 | -2.19 | 0.129 | 1.73 | 1.41 | -- | -0.539 | 3.89 | 10.04 | 1342 | -- | -- |
| 235.99 | 0.715 | 4.83 | -2.41 | 0.136 | 1.73 | -- | -1.18 | -0.571 | 1.5 | 10.1 | 1345 | -- | -- |
| 237.56 | 0.718 | 4.82 | -2.19 | 0.214 | 1.69 | -- | -- | -0.526 | 0.973 | 10.1 | 1351 | -- | -- |
| 238.17 | 0.719 | 4.83 | -2.36 | -- | 1.74 | -- | -1.07 | -0.575 | -- | 10.09 | 1343 | -- | -- |
| 308.05 | 0.823 | 4.7 | -1.66 | 0.488 | -- | 0.951 | -- | -0.0299 | 0.933 | -- | -- | -- | -- |
| 311.08 | 0.826 | 4.7 | -1.69 | 0.497 | -- | -- | -- | -0.0326 | 24 | -- | -- | -- | -- |
| 240.04 | 0.722 | 4.81 | -2.19 | -- | 1.73 | -- | -- | -0.521 | -- | 10.1 | 1342 | -- | -- |
| 334.46 | 0.852 | 4.69 | -- | 0.537 | 1.17 | -- | -- | -0.0325 | 1.83 | 19.98 | 1920 | -- | -- |
| 326.6 | 0.844 | 4.69 | -1.68 | -- | -- | -- | -- | -0.0257 | -- | -- | -- | -- | -- |
| 386.42 | 0.92 | 4.66 | -- | 0.475 | -- | -- | -- | 0.156 | 23.8 | -- | -- | -- | -- |
| 332.61 | 0.849 | 4.68 | -- | -- | 1.22 | -- | -- | -0.00529 | -- | 29.99 | 2692 | -- | -- |
| 400.65 | 0.934 | 4.65 | -- | -- | -- | -- | -- | 0.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 230.33 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 16 |
| 2 | 230.48 | radiation | 10 | 1440 | > th | dose independent | sin | 13 | NA |
| 3 | 230.58 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 21 |
| 5 | 231.23 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 3 |
| 6 | 231.23 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 13 |
| 10 | 231.51 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 5 |
| 34 | 232.12 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 44 | 232.38 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 3 |
| 56 | 232.38 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 61 | 232.44 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 83 | 233.25 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 86 | 233.43 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 22 |
| 87 | 233.43 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 5 |
| 112 | 233.85 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 114 | 233.87 | humidity | 70 | 1440 | < th | dose independent | sin | 13 | NA |
| 151 | 234.19 | humidity | 70 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 153 | 234.23 | humidity | 70 | 1440 | < th | dose independent | rect. | 15 | 5 |
| 164 | 234.25 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 17 |
| 165 | 234.29 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 12 |
| 171 | 234.49 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 19 |
| 175 | 234.55 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 189 | 234.73 | radiation | 20 | 1440 | < th | dose dependent | sin | 14 | NA |
| 204 | 234.87 | radiation | 10 | 1440 | > th | dose independent | rect. | 13 | 20 |
| 205 | 234.88 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 243 | 235.70 | humidity | 70 | 1440 | > th | dose independent | sin | 13 | NA |
| 249 | 235.82 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 269 | 235.99 | humidity | 80 | 1440 | < th | dose dependent | sin | 15 | NA |
| 272 | 236.06 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 273 | 236.06 | radiation | 10 | 1440 | > th | dose independent | rect. | 5 | 13 |
| 356 | 236.28 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 388 | 236.78 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 13 |
| 391 | 236.82 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 10 |
| 395 | 236.86 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 16 |
| 396 | 236.89 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 5 |
| 427 | 237.09 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 429 | 237.13 | temperature | 25 | 720 | > th | dose dependent | sin | 14 | NA |
| 472 | 237.54 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 514 | 238.05 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 10 |
| 534 | 238.15 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 21 |
| 550 | 238.24 | radiation | 1 | 1440 | > th | dose dependent | sin | 13 | NA |
| 570 | 238.28 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 21 |
| 574 | 238.46 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 20 |
| 661 | 238.98 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 705 | 239.09 | radiation | 10 | 1440 | > th | dose independent | sin | 21 | NA |
| 747 | 239.18 | humidity | 80 | 1440 | < th | dose dependent | rect. | 7 | 14 |
| 793 | 239.26 | humidity | 80 | 1440 | < th | dose dependent | rect. | 3 | 18 |
| 795 | 239.27 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 810 | 239.27 | humidity | 80 | 1440 | < th | dose dependent | rect. | 5 | 16 |
| 853 | 239.36 | temperature | 30 | 720 | < th | dose independent | sin | 12 | NA |
| 854 | 239.36 | wind | 1 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 871 | 239.39 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 966 | 239.41 | temperature | 30 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 975 | 239.45 | temperature | 30 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 981 | 239.49 | radiation | 30 | 1440 | < th | dose independent | rect. | 15 | 17 |
| 983 | 239.50 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 12 |
| 996 | 239.56 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 8 |
