BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0207200 Os01g0207200|AK103341
(623 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G14920.1 | chr3:5018275-5020104 FORWARD LENGTH=610 557 e-159
AT5G05480.1 | chr5:1622338-1624164 REVERSE LENGTH=609 349 2e-96
>AT3G14920.1 | chr3:5018275-5020104 FORWARD LENGTH=610
Length = 609
Score = 557 bits (1436), Expect = e-159, Method: Compositional matrix adjust.
Identities = 278/557 (49%), Positives = 361/557 (64%), Gaps = 17/557 (3%)
Query: 50 LASLKLNASAPPTTYFEVDRPIRPPRGSVG-PCSTLLLSNSFGATYGRPPVTAAYAPPSC 108
+SL N + PT YFEV +P P + PCS +L + FG TY +PPV + Y PS
Sbjct: 43 FSSLPQNVTKSPTRYFEVQKPPVPNLPTAQQPCSYQILHHDFGYTYAKPPVLSNYTLPSH 102
Query: 109 LAXXXXXXXXASSIALAVLEWSADCRGRQFDRIFGVWLSGAELLRSCTAEPRATGIVWSV 168
+ + + VLE+ + +GRQFDRIFGVWL G E+LRSCTAEPR GIVWSV
Sbjct: 103 CS--------SREFSKIVLEFKSTSQGRQFDRIFGVWLDGVEILRSCTAEPRPNGIVWSV 154
Query: 169 SRDVTRYAALLA--EPGEIAVYLGNLVDSTYTGVYHANLTLHLY---FHXXXXXXXXXXX 223
+DVT+Y +LL E ++VYLGNL+D TYTGVYH ++ H Y +
Sbjct: 155 EKDVTKYHSLLVKNETQILSVYLGNLIDKTYTGVYHVDVIFHFYQSESNLQDVSGYSSSK 214
Query: 224 XDLIVPISRSLPLNDGQWFAIQNSTDVQGKRLAIPSNTYRAILEVFVSFHSNDEFWYTNP 283
D+I+PISR+LPLNDG WF I NS D + K IP N YRA+LEV+VSFH NDEFWY N
Sbjct: 215 ADMILPISRNLPLNDGLWFEIVNSNDTKYKEFEIPRNVYRAVLEVYVSFHENDEFWYGNL 274
Query: 284 PNEYIEANNLSNVPGNGAFREVVVKVNDDIVGAIWPFTVIYTGGVNPLLWRPITGIGSFN 343
PN+Y+ ANNLS V GNG FREVVV ++ DI GA+WPF V++TGG+NPLLWRPIT IGSF+
Sbjct: 275 PNDYVTANNLS-VAGNGPFREVVVSLDGDIAGAVWPFPVVFTGGINPLLWRPITAIGSFD 333
Query: 344 LPTYDIDITPFLGKLLDGKEHDFGFGVTNALDVWYIDANLHLWLDHKSEETTGSLISYEA 403
LP+YDI+ITPFLG LLDGK H GF VTNAL+VWYIDANLHLWLD + E G ++ +
Sbjct: 334 LPSYDIEITPFLGSLLDGKTHKVGFSVTNALNVWYIDANLHLWLDQEKEIVEGKVLDFSR 393
Query: 404 QGLVLNVDSGFSGLDGQFVTSASRHISATGLVKSSYGEVTTNFYQRFSYVNSNVYSKNGS 463
L ++ S F GL+G F T A R I++ GLVKSS+G++ TN Q FSY N V K+G+
Sbjct: 394 SSLEISSVSDFKGLNGNFTTKAKRSITSVGLVKSSHGDIITNANQEFSYENKMVLGKDGN 453
Query: 464 VQVVNQTIDAKSGVFAKDALAVLLSEELHQIFPLYVYTGTSDEEADEYTLISHVKLGVNE 523
+Q+++Q I A + AK A + + + + FP Y+ + T +++ + Y +++V + NE
Sbjct: 454 LQIIDQLIQADDRIHAKRASREIYAAKSIKSFPFYLDSDTLEQQNNTYLAVANVSMAFNE 513
Query: 524 K--ETSGGKMGFSYNSLRNAQSAHGSMKVKKNLVVGGLGETHQAYKYVGADGCYFRDVRS 581
+ E+ G M + L N Q G M VK NLVV G G T Q Y YVG+D CYFR++ S
Sbjct: 514 ERSESDKGLMRTFKSKLENKQEGQGVMVVKNNLVVSGYGSTQQVYNYVGSDQCYFRNISS 573
Query: 582 KNYTVLSDHSGDSCTKR 598
NYT+L D C K+
Sbjct: 574 YNYTILYDKVESVCKKK 590
>AT5G05480.1 | chr5:1622338-1624164 REVERSE LENGTH=609
Length = 608
Score = 349 bits (896), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 210/560 (37%), Positives = 294/560 (52%), Gaps = 38/560 (6%)
Query: 51 ASLKLNASAPPTTYFEVDRPIRPPRGSVGP-CSTLLLSNSFGATYGRPPVTAAYAP-PSC 108
AS L + P Y E+ RP+ P + P CS +L +SF T RPP T Y P SC
Sbjct: 36 ASTCLRSPVEPQEYEELRRPL--PSDQLTPSCSHVLFRHSFANTINRPPFTTPYTPPSSC 93
Query: 109 LAXXXXXXXXASSIALAVLEWSADCRGRQFDRIFGVWLSGAELLRSCTAEPRATGIVWSV 168
++ + VL+ A G Q+DRI G+WL G ELLR+ TAEP +GI W+V
Sbjct: 94 IS---------PPWSYVVLDLRAASSGDQYDRISGLWLGGVELLRTSTAEPSPSGIFWNV 144
Query: 169 SRDVTRYAALLAEPG-EIAVYLGNLVDSTYTGVYHANLTLHLY--------------FHX 213
+DV+RY++L + + L N+V+ YTG+YH N+TL Y
Sbjct: 145 RKDVSRYSSLFMRSDLNVTMMLENIVNDVYTGIYHINVTLIFYEFNPIASNLKISNRLGF 204
Query: 214 XXXXXXXXXXXDLIVPISRSLPLNDGQWFAIQNSTDVQGKRLAIPSNTYRAILEVFVSFH 273
DLI+P+ N G WF I+N + K + IPSNT + +LE++VSFH
Sbjct: 205 VDSQKRDQTPADLIIPVCDGG--NRGFWFMIENPRETYSKGIQIPSNTRQIVLELYVSFH 262
Query: 274 SNDEFWYTNPPNEYIEANNLSNVPGNGAFREVVVKVNDDIVGAIWPFTVIYTGGVNPLLW 333
NDEFWY+NPPN YI NNL+ GNGA+REV VK++ VG+ PF VI+TGG+NPL W
Sbjct: 263 GNDEFWYSNPPNSYIRTNNLTTGRGNGAYREVFVKIDGRYVGSEVPFPVIFTGGINPLFW 322
Query: 334 RPITGIGSFNLPTYDIDITPFLGKLLDGKEHDFGFGVTNALDVWYIDANLHLWLDHKSEE 393
P+ IG+FNLP+YD+D+TPFLG LLDGK H+F FGV + + W +DANLHLWLDH S
Sbjct: 323 EPVVAIGAFNLPSYDMDLTPFLGLLLDGKSHEFAFGVNDGISYWLVDANLHLWLDHGSSN 382
Query: 394 TTGSLISYEAQGLVLNVDSGFSGLDGQFVTSASRHISATGLVKSSYGEVTTNFYQRFSYV 453
Y++ + LDG F A G V+SS G +TT F
Sbjct: 383 VEAGSRLYDSPSRHMMRQEQLEQLDGSFKVEAEVSSEYDGWVRSSKGNLTTMVKSMFKVD 442
Query: 454 NSNVYSKNGSVQVVNQTIDAKSGVFAKDALAVLLSEELHQ-IFPLYVYTGT---SDEEAD 509
+ + KNG+ + V Q + + V ++ +HQ +PL V T T + D
Sbjct: 443 SLVRFEKNGTYKRVEQRVKTERIVEVTSESGKPVNRVVHQRTYPLTVITSTLRGLTNDKD 502
Query: 510 EYTLISHVKLGVNEKETSGGKMGFSYNSLRNAQSAHGSMKVKKNLVVGGLGETHQAYKYV 569
Y L+++V +NE + G + Y+ Q + G M+V+ + V+ G T Q+ Y+
Sbjct: 503 TYMLVTNVSHALNETHSDGEALIQVYSR----QDSEGWMEVEDHNVLAGEASTKQSLSYI 558
Query: 570 GADGCYFRDVRSKNYTVLSD 589
CY R + + N + D
Sbjct: 559 DEFSCYSRTIVAANGEIAQD 578
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.134 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,371,637
Number of extensions: 568716
Number of successful extensions: 1203
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1193
Number of HSP's successfully gapped: 2
Length of query: 623
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 518
Effective length of database: 8,227,889
Effective search space: 4262046502
Effective search space used: 4262046502
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)