BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0207200 Os01g0207200|AK103341
(623 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0207200 Similar to Peptide-N4-(N-acetyl-beta-glucosami... 1186 0.0
Os01g0207100 776 0.0
Os01g0208400 Conserved hypothetical protein 583 e-166
Os01g0207600 Conserved hypothetical protein 576 e-164
Os05g0395000 Virulence factor, pectin lyase fold family pro... 354 1e-97
Os01g0207400 Conserved hypothetical protein 212 6e-55
>Os01g0207200 Similar to Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine
amidase A (EC 3.5.1.52) (PNGase A) (Glycopeptide
N-glycosidase) (N-glycanase) [Contains:
Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine
amidase A light chain (PNGase A small chain) (PNGase A
subunit B)
Length = 623
Score = 1186 bits (3067), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 583/623 (93%), Positives = 583/623 (93%)
Query: 1 MASPPTTAAADPGXXXXXXXXXXXXXXXXXXXXASAAAVPHRHRLPSHHLASLKLNASAP 60
MASPPTTAAADPG ASAAAVPHRHRLPSHHLASLKLNASAP
Sbjct: 1 MASPPTTAAADPGRRRRLLLVVVVLLLLLLPLVASAAAVPHRHRLPSHHLASLKLNASAP 60
Query: 61 PTTYFEVDRPIRPPRGSVGPCSTLLLSNSFGATYGRPPVTAAYAPPSCLAXXXXXXXXAS 120
PTTYFEVDRPIRPPRGSVGPCSTLLLSNSFGATYGRPPVTAAYAPPSCLA AS
Sbjct: 61 PTTYFEVDRPIRPPRGSVGPCSTLLLSNSFGATYGRPPVTAAYAPPSCLAGGGGGGGGAS 120
Query: 121 SIALAVLEWSADCRGRQFDRIFGVWLSGAELLRSCTAEPRATGIVWSVSRDVTRYAALLA 180
SIALAVLEWSADCRGRQFDRIFGVWLSGAELLRSCTAEPRATGIVWSVSRDVTRYAALLA
Sbjct: 121 SIALAVLEWSADCRGRQFDRIFGVWLSGAELLRSCTAEPRATGIVWSVSRDVTRYAALLA 180
Query: 181 EPGEIAVYLGNLVDSTYTGVYHANLTLHLYFHXXXXXXXXXXXXDLIVPISRSLPLNDGQ 240
EPGEIAVYLGNLVDSTYTGVYHANLTLHLYFH DLIVPISRSLPLNDGQ
Sbjct: 181 EPGEIAVYLGNLVDSTYTGVYHANLTLHLYFHPAPPPPPPPQQADLIVPISRSLPLNDGQ 240
Query: 241 WFAIQNSTDVQGKRLAIPSNTYRAILEVFVSFHSNDEFWYTNPPNEYIEANNLSNVPGNG 300
WFAIQNSTDVQGKRLAIPSNTYRAILEVFVSFHSNDEFWYTNPPNEYIEANNLSNVPGNG
Sbjct: 241 WFAIQNSTDVQGKRLAIPSNTYRAILEVFVSFHSNDEFWYTNPPNEYIEANNLSNVPGNG 300
Query: 301 AFREVVVKVNDDIVGAIWPFTVIYTGGVNPLLWRPITGIGSFNLPTYDIDITPFLGKLLD 360
AFREVVVKVNDDIVGAIWPFTVIYTGGVNPLLWRPITGIGSFNLPTYDIDITPFLGKLLD
Sbjct: 301 AFREVVVKVNDDIVGAIWPFTVIYTGGVNPLLWRPITGIGSFNLPTYDIDITPFLGKLLD 360
Query: 361 GKEHDFGFGVTNALDVWYIDANLHLWLDHKSEETTGSLISYEAQGLVLNVDSGFSGLDGQ 420
GKEHDFGFGVTNALDVWYIDANLHLWLDHKSEETTGSLISYEAQGLVLNVDSGFSGLDGQ
Sbjct: 361 GKEHDFGFGVTNALDVWYIDANLHLWLDHKSEETTGSLISYEAQGLVLNVDSGFSGLDGQ 420
Query: 421 FVTSASRHISATGLVKSSYGEVTTNFYQRFSYVNSNVYSKNGSVQVVNQTIDAKSGVFAK 480
FVTSASRHISATGLVKSSYGEVTTNFYQRFSYVNSNVYSKNGSVQVVNQTIDAKSGVFAK
Sbjct: 421 FVTSASRHISATGLVKSSYGEVTTNFYQRFSYVNSNVYSKNGSVQVVNQTIDAKSGVFAK 480
Query: 481 DALAVLLSEELHQIFPLYVYTGTSDEEADEYTLISHVKLGVNEKETSGGKMGFSYNSLRN 540
DALAVLLSEELHQIFPLYVYTGTSDEEADEYTLISHVKLGVNEKETSGGKMGFSYNSLRN
Sbjct: 481 DALAVLLSEELHQIFPLYVYTGTSDEEADEYTLISHVKLGVNEKETSGGKMGFSYNSLRN 540
Query: 541 AQSAHGSMKVKKNLVVGGLGETHQAYKYVGADGCYFRDVRSKNYTVLSDHSGDSCTKRNP 600
AQSAHGSMKVKKNLVVGGLGETHQAYKYVGADGCYFRDVRSKNYTVLSDHSGDSCTKRNP
Sbjct: 541 AQSAHGSMKVKKNLVVGGLGETHQAYKYVGADGCYFRDVRSKNYTVLSDHSGDSCTKRNP 600
Query: 601 YNGAKFSLRNDQSARRKLMVNNL 623
YNGAKFSLRNDQSARRKLMVNNL
Sbjct: 601 YNGAKFSLRNDQSARRKLMVNNL 623
>Os01g0207100
Length = 570
Score = 776 bits (2004), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/534 (74%), Positives = 437/534 (81%), Gaps = 12/534 (2%)
Query: 42 RHRLPSH-HLASLKLNASAPPTTYFEVDRPIRPPRGSVGPCSTLLLSNSFGATYGRPPVT 100
R R PS LAS + PPTT+FEVDRPIRPPRGSVGPCSTLLLS+SFG TYGR PVT
Sbjct: 30 RSRFPSTLRLASFDASPPPPPTTFFEVDRPIRPPRGSVGPCSTLLLSHSFGYTYGRGPVT 89
Query: 101 AAYAPPSCLAXXXXXXXXASSIALAVLEWSADCRGRQFDRIFGVWLSGAELLRSCTAEPR 160
AYA A S+ALAVLEWSADCRGRQFDRIFGVWLSGAELLRSCTAEPR
Sbjct: 90 VAYA---PPACLAAGAAAGGSLALAVLEWSADCRGRQFDRIFGVWLSGAELLRSCTAEPR 146
Query: 161 ATGIVWSVSRDVTRYAALLAEPGEIAVYLGNLVDSTYTGVYHANLTLHLYFHXXXXXXXX 220
ATGIVWSVSRDV+RY ALLA PGE+AVYLGNL+D TYTGVYHANLTLHLYFH
Sbjct: 147 ATGIVWSVSRDVSRYTALLAAPGEVAVYLGNLIDDTYTGVYHANLTLHLYFHPAAAPPPP 206
Query: 221 XXX-------XDLIVPISRSLPLNDGQWFAIQNSTDVQGKRLAIPSNTYRAILEVFVSFH 273
DLI PISRSLPLNDGQWFAIQNST+VQ K+L IPSNTYRA+LEVFVSFH
Sbjct: 207 EQQQQQQQQHADLIFPISRSLPLNDGQWFAIQNSTNVQSKKLVIPSNTYRAVLEVFVSFH 266
Query: 274 SNDEFWYTNPPNEYIEANNLSNVPGNGAFREVVVKVNDDIVGAIWPFTVIYTGGVNPLLW 333
SNDE WY +PPNEYIEANN+S +PGNGAFRE+ V+++ D+VGA+WPFTVIYTGGVNPL W
Sbjct: 267 SNDEDWYMHPPNEYIEANNISILPGNGAFREITVQLDGDVVGAVWPFTVIYTGGVNPLFW 326
Query: 334 RPITGIGSFNLPTYDIDITPFLGKLLDGKEHDFGFGVTNALDVWYIDANLHLWLDHKSEE 393
RPIT IGSFNLPTYDIDITPFLGKLLDGKEH+FGF VTNALDVW+IDANLH+WLDHKSE+
Sbjct: 327 RPITAIGSFNLPTYDIDITPFLGKLLDGKEHNFGFSVTNALDVWFIDANLHIWLDHKSEK 386
Query: 394 TTGSLISYEAQGLVLNVDSGFSGLDGQFVTSASRHISATGLVKSSYGEVTTNFYQRFSYV 453
T GSL+SYEA L L+VDS FS LDG+FVTSA RHISATG V SSYG V T FYQRFSY
Sbjct: 387 TFGSLVSYEAPKLTLHVDSNFSALDGRFVTSAGRHISATGWVNSSYGNVMTTFYQRFSYK 446
Query: 454 NSNVYSKNGSVQVVNQTIDAKSGVFAKDALAVLLSEELHQIFPLYVYTGTSDEEADEYTL 513
NSN+YSKNG+ QVVNQTIDAKSGVFAK ++ VL EE+H+ FPLY+++GTSD+ DEY+L
Sbjct: 447 NSNLYSKNGTFQVVNQTIDAKSGVFAKSSV-VLFLEEVHRTFPLYIFSGTSDQVGDEYSL 505
Query: 514 ISHVKLGVNEKETSGGKMGFSYNSLRNAQSAHGSMKVKKNLVVGGLGETHQAYK 567
+S VK+G NE+ SG K FSY SLRNAQSAHG MKVKKNLVV GLGET K
Sbjct: 506 VSVVKMGFNERRISGRKQEFSYISLRNAQSAHGYMKVKKNLVVDGLGETRGGQK 559
>Os01g0208400 Conserved hypothetical protein
Length = 616
Score = 583 bits (1503), Expect = e-166, Method: Compositional matrix adjust.
Identities = 310/580 (53%), Positives = 391/580 (67%), Gaps = 34/580 (5%)
Query: 38 AVPHRHRLPSHHLASLKLNASAPPTT--------YFEVDRPIRPPRGSVGPCSTLLLSNS 89
A P + RL + +A+L+ +A PP YFEVDRP RPP GS GPCSTLLLS+S
Sbjct: 25 ASPLKLRLSASEVAALEAHAPPPPPPPPPDTPTTYFEVDRPHRPPPGSFGPCSTLLLSHS 84
Query: 90 FGATYGRPPVTAAYAPPSCLAXXXXXXXXASSIALAVLEWSADCRGRQFDRIFGVWLSGA 149
FG TY PPVTA Y+PP CLA AS+I+LAVLEW A CRG QFDRIFGVWL G
Sbjct: 85 FGFTYTLPPVTAPYSPPPCLAAAGGR---ASAISLAVLEWRATCRGVQFDRIFGVWLGGV 141
Query: 150 ELLRSCTAEPRATGIVWSVSRDVTRYAALLA--EPGEIAVYLGNLVDSTYTGVYHANLTL 207
ELLRSCTAEPR G+VWSVS+DVT+YA+LLA +AVYL NLV+ YTGVYHAN+TL
Sbjct: 142 ELLRSCTAEPRPKGVVWSVSKDVTKYASLLAARNSSTLAVYLANLVNDQYTGVYHANVTL 201
Query: 208 HLYF-HXXXXXXXXXXXXDLIVPISRSLPLNDGQWFAIQNSTDVQGKRLAIPSNTYRAIL 266
HLYF H D+IVPIS+SLPLN GQWF I N+ DV+ LA+P+N YRA+L
Sbjct: 202 HLYFRHPPQPPQPGLGPADVIVPISQSLPLNGGQWFQINNNEDVESASLAVPANAYRAVL 261
Query: 267 EVFVSFHSNDEFWYT--NPPNEYIEANNLSNVPGNGAFREVVVKVNDDIVGAIWPFTVIY 324
EV++S+H +DEFWYT NP N GNG FREV V+++ D+VGA+WPF VIY
Sbjct: 262 EVYLSYHGSDEFWYTYGNPFN------------GNGPFREVTVRIDGDVVGAVWPFPVIY 309
Query: 325 TGGVNPLLWRPITGIGSFNLPTYDIDITPFLGKLLDGKEHDFGFGVTNALDVWYIDANLH 384
TGG++P LWRPI+GIGSFNLP+YDI++TPFLG LLDG+EH+ GF VT+A D WY+D NLH
Sbjct: 310 TGGISPFLWRPISGIGSFNLPSYDIELTPFLGWLLDGEEHELGFAVTDAQDFWYVDGNLH 369
Query: 385 LWLDHKSEETTGSLISYEAQGL--VLNVDSGFSGLDGQFVTSASRHISATGLVK-SSYGE 441
LWLD +S TT +ISY+A L V V S G + + T+A R ISA G V+ SSYG+
Sbjct: 370 LWLDPRSAATTAGIISYDAPPLEKVTAVASRGPG-NEYYQTTAFRRISAAGWVQTSSYGK 428
Query: 442 VTTNFYQRFSYVNSNVYSKNGSVQVVNQTIDAKSGVFAKDALAVLLSEELHQIFPLYVYT 501
+T + QRFS+VN+N ++ + Q VNQT DA SGV D V S+E Q FPLY+Y
Sbjct: 429 ITATWTQRFSFVNTNQVRED-TEQTVNQTTDAYSGVHVTDHAGVAYSQEAEQSFPLYIYQ 487
Query: 502 GTSDEEA-DEYTLISHVKLGVNEKETSGGKMGFSYNSLRNAQSAHGSMKVKKNLVVGGLG 560
G ++ + D +T + V+L E+ + G+ GF SL NAQ + ++V++ VG
Sbjct: 488 GQVNQTSNDSFTEETSVQLRFEEERVAAGRPGFWSRSLSNAQDSAVDVRVQEGDAVGTSW 547
Query: 561 ETHQAYKYVGADGCYFRDVRSKNYTVLSDHSGDSCTKRNP 600
Q Y+Y DGCY+RDV S+ Y V+SDH+ + C K +P
Sbjct: 548 RAAQTYRYEATDGCYYRDVASQGYGVVSDHADEVCAKGSP 587
>Os01g0207600 Conserved hypothetical protein
Length = 612
Score = 576 bits (1485), Expect = e-164, Method: Compositional matrix adjust.
Identities = 317/587 (54%), Positives = 384/587 (65%), Gaps = 41/587 (6%)
Query: 37 AAVPHRH--RLPSHHLASLKLNASAPPTTYFEVDRPIRPPRGSVGPCSTLLLSNSFGATY 94
AA+ R RL +A A+ PTTYFEVDRP+RPP GS GPCSTLLLS+SFG TY
Sbjct: 16 AAIASRRNLRLSPADIAVPDAAAADTPTTYFEVDRPLRPPPGSSGPCSTLLLSSSFGFTY 75
Query: 95 GRPPVTAAYAPPSCLAXXXXXXXXASSIALAVLEWSADCRGRQFDRIFGVWLSGAELLRS 154
+PPVTAAY+PP CLA A +I+LAVLEW A CRG QFDRIFGVWL G ELLRS
Sbjct: 76 TKPPVTAAYSPPDCLAAAGGG---APAISLAVLEWRATCRGVQFDRIFGVWLGGVELLRS 132
Query: 155 CTAEPRATGIVWSVSRDVTRYAALLAEPGE-IAVYLGNLVDSTYTGVYHANLTLHLYF-- 211
CTAEPR GIVWSVS+DVTRYA+LLA +AVYLGNL+D YTGVYHAN+TLHLYF
Sbjct: 133 CTAEPRPNGIVWSVSKDVTRYASLLAAGNSTLAVYLGNLIDDQYTGVYHANITLHLYFGP 192
Query: 212 HXXXXXXXXXXXXDLIVPISRSLPLNDGQWFAIQNSTDVQGKRLAIPSNTYRAILEVFVS 271
D+IVP+SRSLPLNDG WF IQN+TDV+ + +PSNTYRA+LEV+VS
Sbjct: 193 TPARQPAPATAPADIIVPVSRSLPLNDGLWFQIQNATDVESASIVLPSNTYRAVLEVYVS 252
Query: 272 FHSNDEFWYTNPPNEYIEANNLSNVPGNGAFREVVVKVNDDIVGAIWPFTVIYTGGVNPL 331
FH +DEFWYT+ P+ GNG FREV V V+ D+VGA+WPF VI+TGG+NPL
Sbjct: 253 FHGDDEFWYTHTPD------------GNGPFREVTVLVDGDLVGAVWPFPVIFTGGINPL 300
Query: 332 LWRPITGIGSFNLPTYDIDITPFLGKLLDGKEHDFGFGVTNALDVWYIDANLHLWLDHKS 391
LWRPITGIGSFNLPTYDI++TPFL KLLDGK H+ F VTNA+DVWY+D NLHLWLD +
Sbjct: 301 LWRPITGIGSFNLPTYDIELTPFLAKLLDGKAHELAFAVTNAVDVWYVDGNLHLWLDPMT 360
Query: 392 EETTGSLISYEAQGLVL-----NVDSGFSGLDGQFV--TSASRHISATGLVKS-SYGEVT 443
TTGSL+SY+A L S F GL ++ T+ASR ISA G V+S S+G +T
Sbjct: 361 TATTGSLVSYDAPRLAAVNTSHTTASRFDGLSERYYYHTTASRRISAAGWVESPSHGRIT 420
Query: 444 TNFYQRFSYVNSNVYSKNGSVQVVNQTIDAKSGVFAKD-ALAVLLSEELHQIFPLYV--Y 500
TN Q F++ N+ ++ +GS + VNQT A + V A D A AVL S + H FPLYV
Sbjct: 421 TNATQTFAFENTYAFAGDGSAETVNQTTVADAAVSATDLAGAVLYSRQAHHDFPLYVDIE 480
Query: 501 TGTSDEEAD-EYTLISHVKLGVNEKETSGGKMGFSYN-----SLRNAQSAHGSMKVKKNL 554
TS AD YT+ + E + G+ S SLR+ QS ++++
Sbjct: 481 AKTSPHAADVTYTVAREYR----ETAIAAGRWLSSGTPPRRYSLRDTQSGAVDVEMRDGN 536
Query: 555 VVGGLGETHQAYKYVGADGCYFRDVRSKNYTVLSDHSGDSCTKRNPY 601
V T Q Y+ DGCYFR+V S Y+V SD S + C+ Y
Sbjct: 537 AVSATWGTRQTYRLEATDGCYFRNVTSSGYSVASDESDEVCSDSQEY 583
>Os05g0395000 Virulence factor, pectin lyase fold family protein
Length = 612
Score = 354 bits (908), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 210/543 (38%), Positives = 297/543 (54%), Gaps = 41/543 (7%)
Query: 81 CSTLLLSNSFGATYGRPPVTAAYAPPS-CLAXXXXXXXXASSIALAVLEWSADCRGRQFD 139
C+ +LS SFG TYG P A+YAPP+ C A +L VL +SA C G Q+D
Sbjct: 59 CTVPVLSYSFGDTYGAAPAKASYAPPAGCPA----------PWSLVVLTFSASCAGDQYD 108
Query: 140 RIFGVWLSGAELLRSCTAEPRATGIVWSVSRDVTRYAALLAEP--GEIAVYLGNLVDSTY 197
R+ VWL GAELLR+ TAEP G+ W+V +DVTRY+ALL P G ++V L N+V+ Y
Sbjct: 109 RVAAVWLDGAELLRTTTAEPTPEGVRWTVRKDVTRYSALLRSPPGGVLSVMLENVVNDKY 168
Query: 198 TGVYHANLTLHLYFHXXXXXXXXXXX-----------------------XDLIVPISRSL 234
TGVY N++L FH DLIVPIS
Sbjct: 169 TGVYSVNVSLE--FHGTPPYLSDAASSSPAGVASNDPKEPMLPESYFQPADLIVPISDVA 226
Query: 235 PLNDGQ-WFAIQNSTDVQGKRLAIPSNTYRAILEVFVSFHSNDEFWYTNPPNEYIEANNL 293
G WF IQN++D + + IPS+TYRA+LEVFVS HSNDE+WY+NPP+ YI NNL
Sbjct: 227 GNGKGGFWFRIQNASDSHSRLVTIPSSTYRAVLEVFVSPHSNDEYWYSNPPDIYIRENNL 286
Query: 294 SNVPGNGAFREVVVKVNDDIVGAIWPFTVIYTGGVNPLLWRPITGIGSFNLPTYDIDITP 353
+ GN A+REVVV V+ VG+ PF VIYTGG+NPL W+P+ +G+F+LPTYD+++TP
Sbjct: 287 TTRRGNAAYREVVVSVDHRFVGSFVPFPVIYTGGINPLFWQPVAALGAFDLPTYDVELTP 346
Query: 354 FLGKLLDGKEHDFGFGVTNALDVWYIDANLHLWLDHKSEETTGSLISYEAQGLVLNVDSG 413
FLG L+D H+ G V + + W +DANLHLWLD + + +L +Y+ L ++
Sbjct: 347 FLGLLVDSNAHEIGLSVFDGIAEWLVDANLHLWLDPSTSDVHAALGAYQTPRLKISRHYS 406
Query: 414 FSGLDGQFVTSASRHISATGLVKSSYGEVTTNFYQRFSYVNSNVYSKNGSVQVVN--QTI 471
L+G+F A R S +G VKSS+G TT + ++ +G + V+
Sbjct: 407 TRLLEGRFKIKAKRKSSFSGWVKSSFGNFTTEVEAELKATSLVEFTGDGRNKTVSLEAKQ 466
Query: 472 DAKSGVFAKDALAVLLSEELHQIFPLYVYTGTSDEEADEYTLISHVKLGVNEKETSGGKM 531
+ K+ + A D V+ E +PL ++ T D E + + G++ + K
Sbjct: 467 ETKTLIRAGDTRKVIGRVEREAKYPLSLFAETEDGENGTSVVTVSLTHGLSVETEVETKA 526
Query: 532 GFSYNSLRNAQSAHGSMKVKKNLVVGGLGETHQAYKYVGADGCYFRDVRSKNYTVLSDHS 591
S L +AQ+A G M + + V+ G T QAY++ + Y R + + VLSD+
Sbjct: 527 LESKEKLDDAQAAQGWMVLLDHDVLNGSVTTTQAYRFSDDEREYERAIDVVDGAVLSDNV 586
Query: 592 GDS 594
+S
Sbjct: 587 TES 589
>Os01g0207400 Conserved hypothetical protein
Length = 255
Score = 212 bits (540), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 114/252 (45%), Positives = 160/252 (63%), Gaps = 6/252 (2%)
Query: 347 YDIDITPFLGKLLDGKEHDFGFGVTNALDVWYIDANLHLWLDHKSEETTGSLISYEAQGL 406
YD+++TPFLGKLLDGKEH+ GF VTNA WY+DANLHLWLD KS T+G L++Y+A L
Sbjct: 1 YDVELTPFLGKLLDGKEHELGFAVTNAQKSWYVDANLHLWLDPKSVATSGGLVAYDAPKL 60
Query: 407 VLNVDSGFS-GLDGQFVTSASRHISATGLVKSSYGEVTTNFYQRFSYVNSNVYSKNGSVQ 465
+ S S G+DGQ+ +ASR+I+ATG V+SS G +TT F QR ++V++NV + GS Q
Sbjct: 61 TGKIVSNSSDGIDGQYDATASRNITATGWVRSSRGNITTTFTQRLTFVHTNVVTSQGSSQ 120
Query: 466 VVNQTIDAKSGVFAKDALAVLLSEELHQIFPLYVYTGTSDEEADEYTLISHVKLGVNE-K 524
+NQT +A++ V D L +LHQ FPLY++ G L+ V +G +E +
Sbjct: 121 AINQTTEARTEVVTGDGAHAL---QLHQSFPLYIFLGGDGSGTSSQRLMRRVAIGFDETR 177
Query: 525 ETSGGKMGFSYNSLRNAQSAHGSMKVKKNLVVGGLGETHQAYKYVGAD-GCYFRDVRSKN 583
G + ++L N Q+A + ++ + VVG HQ Y+Y G+D GCY R+V S
Sbjct: 178 AAGAGGSSSAASTLHNEQTAAAEVVLRDDQVVGASWRMHQVYEYGGSDGGCYSRNVSSVG 237
Query: 584 YTVLSDHSGDSC 595
Y VL DH+ +SC
Sbjct: 238 YDVLFDHNEESC 249
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,243,023
Number of extensions: 892413
Number of successful extensions: 1890
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1865
Number of HSP's successfully gapped: 7
Length of query: 623
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 516
Effective length of database: 11,448,903
Effective search space: 5907633948
Effective search space used: 5907633948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)