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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0208400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.0144) R2 : 0.000128
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00735 (0.0304) R2dN8 : 0.000165 R2N8 : 0.000128
σ : 0.272
deviance : 33.98
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
31.2 0.262 2.98 -0.00269 0.106 -0.294 0.397 0.658 0.00808 13.6 1.003 16 -- --
31.55 0.262 2.97 0.0215 0.103 -0.248 0.456 -- 0.0149 13.6 1.083 16 -- --
31.79 0.263 2.98 0.00456 0.106 -0.296 -- 0.82 0.00782 13.8 1.037 16 -- --
32.38 0.265 2.97 0.038 0.101 -0.234 -- -- 0.0175 13.5 1.044 16 -- --
32.41 0.265 2.98 0.00836 -- -0.244 -- 0.789 0.00628 -- 1.042 16 -- --
32.95 0.269 2.97 0.0523 0.0637 -- 0.396 -- 0.0136 12.7 -- -- -- --
33.57 0.271 2.97 0.0665 0.069 -- -- -- 0.015 10.9 -- -- -- --
32.95 0.267 2.97 0.0401 -- -0.189 -- -- 0.0152 -- 1.081 16 -- --
32.41 0.265 2.97 -- 0.101 -0.239 -- -- 0.0146 13.5 1.087 16 -- --
33.86 0.272 2.97 0.065 -- -- -- -- 0.0146 -- -- -- -- --
33.69 0.271 2.97 -- 0.0685 -- -- -- 0.00762 10.8 -- -- -- --
32.99 0.267 2.97 -- -- -0.194 -- -- 0.0109 -- 1.035 16 -- --
33.98 0.272 2.97 -- -- -- -- -- 0.00735 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 25.64 temperature 20.0 30 > th dose dependent rect. 2 1
2 25.73 temperature 20.0 30 > th dose independent rect. 2 1
4 25.76 atmosphere 1005.0 30 > th dose dependent rect. 2 1
5 25.77 atmosphere 1005.0 30 > th dose independent rect. 2 1
6 25.78 wind 3.0 30 < th dose dependent rect. 2 1
11 25.83 humidity 80.0 30 > th dose independent rect. 2 1
14 25.85 wind 3.0 30 < th dose independent rect. 2 1
16 25.87 humidity 70.0 30 > th dose dependent rect. 2 1
24 25.92 temperature 10.0 30 > th dose independent rect. 2 1
26 25.92 temperature 30.0 30 < th dose independent rect. 2 1
27 25.92 humidity 50.0 30 > th dose independent rect. 2 1
31 25.92 atmosphere 1010.0 30 < th dose independent rect. 2 1
33 25.92 radiation 1.0 30 < th dose independent rect. 2 1
38 25.92 precipitation 0.1 30 < th dose independent rect. 2 1
39 25.92 temperature 10.0 30 > th dose independent rect. 3 23
40 25.92 radiation 1.0 30 < th dose dependent rect. 2 1
45 25.92 precipitation 0.1 30 < th dose dependent rect. 2 1
49 26.19 atmosphere 1015.0 30 < th dose dependent rect. 2 1
50 26.37 temperature 30.0 30 < th dose dependent rect. 2 1
56 26.60 wind 1.0 30 > th dose independent rect. 2 1
72 27.07 wind 9.0 30 < th dose independent rect. 3 23
100 27.20 radiation 10.0 14400 < th dose dependent rect. 3 1
102 27.21 wind 9.0 1440 < th dose independent rect. 3 1
103 27.21 temperature 10.0 1440 > th dose independent rect. 3 1
106 27.21 temperature 30.0 1440 < th dose independent rect. 3 1
110 27.21 humidity 50.0 1440 > th dose independent rect. 3 1
119 27.21 atmosphere 995.0 1440 > th dose independent rect. 3 1
120 27.21 radiation 1.0 1440 < th dose independent rect. 3 1
140 27.21 temperature 10.0 1440 > th dose independent rect. 4 23
143 27.21 radiation 1.0 1440 < th dose dependent rect. 3 1
163 27.76 atmosphere 995.0 30 > th dose independent rect. 3 23
174 28.28 precipitation 0.1 30 < th dose independent rect. 3 23
175 28.28 precipitation 0.1 30 < th dose dependent rect. 3 23
184 28.93 wind 1.0 90 < th dose dependent rect. 13 1
190 29.08 wind 1.0 90 < th dose independent rect. 13 1
195 29.19 wind 1.0 30 < th dose dependent rect. 13 5
208 29.22 wind 1.0 30 < th dose independent rect. 13 5
224 29.30 temperature 30.0 30 < th dose independent rect. 3 23
280 29.50 wind 1.0 30 < th dose dependent rect. 9 9
320 29.61 wind 1.0 30 < th dose independent rect. 13 14
333 29.69 humidity 50.0 30 > th dose independent rect. 3 23
396 29.89 temperature 25.0 270 > th dose independent rect. 23 4
408 29.90 wind 1.0 30 < th dose dependent rect. 13 14
450 30.08 wind 1.0 30 < th dose independent rect. 9 6
506 30.21 temperature 25.0 270 > th dose dependent rect. 23 4
514 30.23 wind 1.0 30 < th dose dependent sin 19 NA
516 30.24 wind 1.0 30 < th dose independent sin 21 NA
533 30.28 wind 1.0 30 < th dose dependent sin 21 NA
577 30.36 wind 1.0 10 < th dose independent sin 18 NA
623 30.51 wind 1.0 30 < th dose independent rect. 6 12
629 30.52 wind 1.0 30 > th dose independent sin 21 NA
666 30.60 humidity 90.0 90 < th dose independent rect. 2 1
729 30.73 precipitation 0.1 720 < th dose independent rect. 3 8
732 30.73 precipitation 0.1 720 < th dose dependent rect. 3 8
813 30.90 atmosphere 995.0 720 > th dose independent rect. 15 8
819 30.91 wind 9.0 720 < th dose independent rect. 3 8
820 30.91 temperature 10.0 720 > th dose independent rect. 15 8
821 30.91 temperature 10.0 720 > th dose independent rect. 23 16
822 30.91 atmosphere 995.0 720 > th dose independent rect. 11 16
823 30.91 atmosphere 995.0 720 > th dose independent rect. 23 16
834 30.93 temperature 10.0 720 > th dose independent rect. 3 8
835 30.93 atmosphere 995.0 720 > th dose independent rect. 3 8
836 30.93 temperature 10.0 720 > th dose independent rect. 11 16
837 30.93 precipitation 0.1 720 < th dose independent rect. 23 16
838 30.93 precipitation 0.1 720 < th dose dependent rect. 23 16
846 30.96 wind 1.0 30 < th dose independent rect. 17 10
855 30.98 wind 1.0 30 > th dose independent rect. 3 23
862 31.00 humidity 50.0 720 > th dose independent rect. 3 8
876 31.02 wind 1.0 30 < th dose independent rect. 21 6
887 31.03 precipitation 0.1 720 < th dose independent rect. 15 8
890 31.03 precipitation 0.1 720 < th dose dependent rect. 15 8
934 31.12 atmosphere 1015.0 30 < th dose independent rect. 3 23
949 31.14 wind 1.0 30 < th dose dependent rect. 6 21
957 31.17 precipitation 0.1 720 < th dose independent rect. 11 16
959 31.17 precipitation 0.1 720 < th dose dependent rect. 11 16