BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0208400 Os01g0208400|AK105750
(616 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G14920.1 | chr3:5018275-5020104 FORWARD LENGTH=610 448 e-126
AT5G05480.1 | chr5:1622338-1624164 REVERSE LENGTH=609 284 8e-77
>AT3G14920.1 | chr3:5018275-5020104 FORWARD LENGTH=610
Length = 609
Score = 448 bits (1153), Expect = e-126, Method: Compositional matrix adjust.
Identities = 235/545 (43%), Positives = 324/545 (59%), Gaps = 27/545 (4%)
Query: 59 YFEVDRPHRPP-PGSFGPCSTLLLSHSFGFTYTLPPVTAPYSPPPCLAAAGGRASAISLA 117
YFEV +P P P + PCS +L H FG+TY PPV + Y+ P + + S
Sbjct: 57 YFEVQKPPVPNLPTAQQPCSYQILHHDFGYTYAKPPVLSNYTLP-----SHCSSREFSKI 111
Query: 118 VLEWRATCRGVQFDRIFGVWLGGVELLRSCTAEPRPKGVVWSVSKDVTKYASLLAARNSS 177
VLE+++T +G QFDRIFGVWL GVE+LRSCTAEPRP G+VWSV KDVTKY SLL +
Sbjct: 112 VLEFKSTSQGRQFDRIFGVWLDGVEILRSCTAEPRPNGIVWSVEKDVTKYHSLLVKNETQ 171
Query: 178 TLAVYLANLVNDQYTGVYHANVTLHLYFRHXXXXXXX--XXXXADVIVPISQSLPLNGGQ 235
L+VYL NL++ YTGVYH +V H Y AD+I+PIS++LPLN G
Sbjct: 172 ILSVYLGNLIDKTYTGVYHVDVIFHFYQSESNLQDVSGYSSSKADMILPISRNLPLNDGL 231
Query: 236 WFQINNNEDVESASLAVPANAYRAVLEVYLSYHGSDEFWYTYGNPFN-----------GN 284
WF+I N+ D + +P N YRAVLEVY+S+H +DEFWY GN N GN
Sbjct: 232 WFEIVNSNDTKYKEFEIPRNVYRAVLEVYVSFHENDEFWY--GNLPNDYVTANNLSVAGN 289
Query: 285 GPFREVTVRIDGDVVGAVWPFPVIYTGGISPFLWRPISGIGSFNLPSYDIELTPFLGWLL 344
GPFREV V +DGD+ GAVWPFPV++TGGI+P LWRPI+ IGSF+LPSYDIE+TPFLG LL
Sbjct: 290 GPFREVVVSLDGDIAGAVWPFPVVFTGGINPLLWRPITAIGSFDLPSYDIEITPFLGSLL 349
Query: 345 DGEEHELGFAVTDAQDFWYVDGNLHLWLDPRSAATTAGIISYDAPPLEKVTAVASRGPGN 404
DG+ H++GF+VT+A + WY+D NLHLWLD ++ + LE +++V+ N
Sbjct: 350 DGKTHKVGFSVTNALNVWYIDANLHLWLDQEKEIVEGKVLDFSRSSLE-ISSVSDFKGLN 408
Query: 405 EYYQTTAFRRISAAGWVQTSSYGKITATWTQRFSFVNTNQVREDTE-QTVNQTTDAYSGV 463
+ T A R I++ G V+ SS+G I Q FS+ N + +D Q ++Q A +
Sbjct: 409 GNFTTKAKRSITSVGLVK-SSHGDIITNANQEFSYENKMVLGKDGNLQIIDQLIQADDRI 467
Query: 464 HVTDHAGVAYSQEAEQSFPLYIYQGQVNQTSNDSFTEETSVQLRFEEERVAA--GRPGFW 521
H + Y+ ++ +SFP Y+ + Q N+++ +V + F EER + G +
Sbjct: 468 HAKRASREIYAAKSIKSFPFYLDSDTLEQ-QNNTYLAVANVSMAFNEERSESDKGLMRTF 526
Query: 522 SRSLSNAQDSAVDVRVQEGDAVGTSWRAAQTYRYEATDGCYYRDVASQGYGVVSDHADEV 581
L N Q+ + V+ V Q Y Y +D CY+R+++S Y ++ D + V
Sbjct: 527 KSKLENKQEGQGVMVVKNNLVVSGYGSTQQVYNYVGSDQCYFRNISSYNYTILYDKVESV 586
Query: 582 CAKGS 586
C K +
Sbjct: 587 CKKKT 591
>AT5G05480.1 | chr5:1622338-1624164 REVERSE LENGTH=609
Length = 608
Score = 284 bits (727), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 193/549 (35%), Positives = 271/549 (49%), Gaps = 50/549 (9%)
Query: 59 YFEVDRPHRPPPGSFGP-CSTLLLSHSFGFTYTLPPVTAPYSPPPCLAAAGGRASAISLA 117
Y E+ RP P P CS +L HSF T + P P + + S
Sbjct: 49 YEELRRPL--PSDQLTPSCSHVLFRHSFANT-----INRPPFTTPYTPPSSCISPPWSYV 101
Query: 118 VLEWRATCRGVQFDRIFGVWLGGVELLRSCTAEPRPKGVVWSVSKDVTKYASLLAARNSS 177
VL+ RA G Q+DRI G+WLGGVELLR+ TAEP P G+ W+V KDV++Y+SL R+
Sbjct: 102 VLDLRAASSGDQYDRISGLWLGGVELLRTSTAEPSPSGIFWNVRKDVSRYSSLF-MRSDL 160
Query: 178 TLAVYLANLVNDQYTGVYHANVTLHLYFRHXXXXXXXXXXX-------------ADVIVP 224
+ + L N+VND YTG+YH NVTL Y + AD+I+P
Sbjct: 161 NVTMMLENIVNDVYTGIYHINVTLIFYEFNPIASNLKISNRLGFVDSQKRDQTPADLIIP 220
Query: 225 ISQSLPLNGGQWFQINNNEDVESASLAVPANAYRAVLEVYLSYHGSDEFWYTYGNPFN-- 282
+ N G WF I N + S + +P+N + VLE+Y+S+HG+DEFWY+ NP N
Sbjct: 221 VCDG--GNRGFWFMIENPRETYSKGIQIPSNTRQIVLELYVSFHGNDEFWYS--NPPNSY 276
Query: 283 ----------GNGPFREVTVRIDGDVVGAVWPFPVIYTGGISPFLWRPISGIGSFNLPSY 332
GNG +REV V+IDG VG+ PFPVI+TGGI+P W P+ IG+FNLPSY
Sbjct: 277 IRTNNLTTGRGNGAYREVFVKIDGRYVGSEVPFPVIFTGGINPLFWEPVVAIGAFNLPSY 336
Query: 333 DIELTPFLGWLLDGEEHELGFAVTDAQDFWYVDGNLHLWLDPRSAATTAGIISYDAPPLE 392
D++LTPFLG LLDG+ HE F V D +W VD NLHLWLD S+ AG YD+P
Sbjct: 337 DMDLTPFLGLLLDGKSHEFAFGVNDGISYWLVDANLHLWLDHGSSNVEAGSRLYDSPS-R 395
Query: 393 KVTAVASRGPGNEYYQTTAFRRISAAGWVQTSSYGKITATWTQRFSFVNTNQVRED-TEQ 451
+ + ++ A GWV+ SS G +T F + + ++ T +
Sbjct: 396 HMMRQEQLEQLDGSFKVEAEVSSEYDGWVR-SSKGNLTTMVKSMFKVDSLVRFEKNGTYK 454
Query: 452 TVNQTTDAYSGVHVTDHAGVAYSQEAEQ-SFPLYIYQGQVNQTSN--DSFTEETSVQLRF 508
V Q V VT +G ++ Q ++PL + + +N D++ T+V
Sbjct: 455 RVEQRVKTERIVEVTSESGKPVNRVVHQRTYPLTVITSTLRGLTNDKDTYMLVTNVSHAL 514
Query: 509 EEERV-AAGRPGFWSRSLSNAQDSAVDVRVQEGDAVGTSWRAAQTYRYEATDGCYYRDVA 567
E +SR QDS + V++ + + Q+ Y CY R +
Sbjct: 515 NETHSDGEALIQVYSR-----QDSEGWMEVEDHNVLAGEASTKQSLSYIDEFSCYSRTIV 569
Query: 568 SQGYGVVSD 576
+ + D
Sbjct: 570 AANGEIAQD 578
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.133 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,506,245
Number of extensions: 528327
Number of successful extensions: 1439
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1429
Number of HSP's successfully gapped: 2
Length of query: 616
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 512
Effective length of database: 8,255,305
Effective search space: 4226716160
Effective search space used: 4226716160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)