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Os05g0395000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Virulence factor, pectin lyase fold family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.7 (0.0243) R2 : 0.912
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.61 (0.06) R2dC : 0.725 R2C : 0.826
β3 : -0.972 (0.0469) R2dE : 0.0855 R2E : 0.186
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0863 (0.0511) R2dN8 : 0.000258 R2N8 : 0.000877
σ : 0.456
deviance : 96.01
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C
peak time of C : 13.7
E
wheather : radiation
threshold : 9.3
memory length : 12
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.05
open length of G : 18.9

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
84.41 0.432 12.7 -0.541 3.59 -0.967 -0.425 0.44 -0.0907 13.7 9.297 12 2.99 18.9
85.28 0.43 12.7 -0.541 3.59 -0.965 -0.533 -- -0.0963 13.7 9.28 12 3.03 18.9
85.16 0.43 12.6 -0.547 3.6 -0.961 -- 0.497 -0.0888 13.7 9.363 12 3.03 18.9
86.32 0.433 12.7 -0.559 3.59 -0.967 -- -- -0.112 13.7 9.285 12 3.03 18.9
178.96 0.623 12.7 -0.482 -- -3.07 -- 0.424 -0.133 -- 5.271 190 1.38 24
170.74 0.613 12.7 -0.707 3.83 -- -0.372 -- -0.139 13.6 -- -- -- --
171.29 0.613 12.7 -0.719 3.83 -- -- -- -0.142 13.6 -- -- -- --
177.86 0.621 12.7 -0.716 -- -3.13 -- -- -0.207 -- 5.574 184 1.82 24
96.01 0.456 12.7 -- 3.61 -0.972 -- -- -0.0863 13.7 9.3 12 3.05 18.9
1069.02 1.53 12.7 -0.873 -- -- -- -- -0.226 -- -- -- -- --
184.92 0.636 12.6 -- 3.85 -- -- -- -0.0615 13.6 -- -- -- --
191.79 0.645 12.7 -- -- -3.15 -- -- -0.149 -- 5.573 184 3.46 24
1089.13 1.54 12.7 -- -- -- -- -- -0.129 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 86.68 radiation 10.0 10 < th dose independent rect. 3 19
3 89.74 radiation 30.0 10 < th dose dependent rect. 3 19
6 90.78 radiation 20.0 90 < th dose dependent rect. 3 18
10 91.23 radiation 10.0 270 < th dose dependent rect. 1 18
21 93.75 radiation 30.0 270 < th dose independent rect. 15 15
24 93.93 precipitation 0.1 270 < th dose independent rect. 19 6
25 93.93 precipitation 0.1 270 < th dose dependent rect. 19 6
28 94.13 temperature 10.0 270 > th dose independent rect. 20 5
29 94.13 temperature 30.0 270 < th dose independent rect. 20 5
30 94.13 humidity 50.0 270 > th dose independent rect. 20 5
33 94.13 atmosphere 995.0 270 > th dose independent rect. 20 5
34 94.13 radiation 1.0 270 < th dose independent rect. 20 5
39 94.13 temperature 10.0 270 > th dose independent rect. 1 19
40 94.13 atmosphere 1015.0 270 < th dose independent rect. 1 19
41 94.13 radiation 1.0 270 < th dose dependent rect. 20 5
48 94.20 wind 9.0 270 < th dose independent rect. 20 5
75 94.83 precipitation 0.1 270 < th dose independent rect. 6 9
76 94.83 precipitation 0.1 270 < th dose dependent rect. 6 9
79 94.88 wind 9.0 270 < th dose independent rect. 1 19
81 94.93 temperature 10.0 270 > th dose independent rect. 6 9
82 94.93 atmosphere 1015.0 270 < th dose independent rect. 6 9
83 94.93 temperature 10.0 270 > th dose independent rect. 15 15
96 95.55 atmosphere 995.0 270 > th dose independent rect. 1 19
98 95.59 wind 9.0 270 < th dose independent rect. 15 15
99 95.69 wind 1.0 270 > th dose independent rect. 20 5
106 95.90 wind 9.0 270 < th dose independent rect. 6 9
118 96.59 atmosphere 995.0 270 > th dose independent rect. 6 9
147 97.81 precipitation 0.1 270 < th dose independent rect. 1 18
149 97.81 precipitation 0.1 270 < th dose dependent rect. 1 18
156 98.08 radiation 30.0 90 < th dose dependent rect. 15 18
218 98.88 atmosphere 995.0 270 > th dose independent rect. 15 15
234 99.37 radiation 10.0 270 < th dose independent rect. 1 7
238 99.53 radiation 30.0 270 < th dose dependent rect. 1 8
248 99.93 radiation 40.0 90 < th dose dependent rect. 15 16
338 101.32 humidity 50.0 270 > th dose independent rect. 6 9
377 102.30 temperature 10.0 270 > th dose dependent rect. 1 6
389 102.45 precipitation 0.1 270 < th dose independent rect. 15 15
390 102.45 precipitation 0.1 270 < th dose dependent rect. 15 15
392 102.49 radiation 1.0 270 > th dose independent rect. 6 9
432 103.51 radiation 10.0 90 < th dose dependent sin 1 NA
433 103.54 humidity 50.0 270 > th dose dependent rect. 20 5
448 103.66 radiation 30.0 10 < th dose dependent rect. 16 17
517 104.24 wind 9.0 270 < th dose dependent rect. 20 5
529 104.46 precipitation 0.1 270 < th dose independent rect. 6 19
530 104.46 precipitation 0.1 270 < th dose dependent rect. 6 19
556 104.68 radiation 10.0 10 < th dose dependent sin 23 NA
567 104.82 atmosphere 1010.0 270 < th dose independent rect. 13 7
574 104.82 radiation 40.0 270 < th dose independent rect. 1 18
597 105.09 radiation 1.0 270 > th dose independent rect. 4 11
609 105.12 temperature 15.0 270 > th dose independent rect. 13 7
643 105.50 precipitation 0.1 270 < th dose independent rect. 20 17
645 105.50 precipitation 0.1 270 < th dose dependent rect. 20 17
740 106.04 radiation 30.0 90 < th dose dependent rect. 3 8
756 106.21 atmosphere 1010.0 270 < th dose independent rect. 1 5
759 106.21 temperature 10.0 270 > th dose independent rect. 20 17
760 106.21 atmosphere 995.0 270 > th dose independent rect. 20 17
783 106.42 wind 1.0 270 > th dose independent rect. 13 7
786 106.45 temperature 10.0 270 > th dose independent rect. 1 5
788 106.45 temperature 30.0 270 < th dose independent rect. 1 5
789 106.45 humidity 50.0 270 > th dose independent rect. 1 5
792 106.45 atmosphere 995.0 270 > th dose independent rect. 1 5
797 106.45 temperature 10.0 270 > th dose independent rect. 6 19
800 106.47 wind 9.0 270 < th dose independent rect. 1 5
811 106.51 wind 9.0 270 < th dose independent rect. 20 17
817 106.59 wind 9.0 270 < th dose independent rect. 13 7
830 106.77 radiation 40.0 270 < th dose independent rect. 13 7
834 106.78 temperature 10.0 270 > th dose dependent rect. 20 5
845 106.85 atmosphere 1015.0 270 < th dose independent rect. 20 5
880 106.91 humidity 50.0 270 > th dose independent rect. 20 17
885 106.96 wind 9.0 270 < th dose independent rect. 6 19
892 107.07 radiation 10.0 10 < th dose independent rect. 3 7
899 107.11 radiation 40.0 270 < th dose independent rect. 24 20
931 107.45 radiation 30.0 90 < th dose dependent rect. 3 6
933 107.46 atmosphere 995.0 270 > th dose independent rect. 13 7
934 107.47 radiation 10.0 90 < th dose independent rect. 3 7
941 107.52 precipitation 0.1 270 < th dose independent rect. 1 5
944 107.52 precipitation 0.1 270 < th dose dependent rect. 1 5
945 107.53 wind 7.0 10 < th dose independent rect. 22 5
954 107.62 temperature 10.0 10 > th dose independent rect. 22 5
955 107.62 temperature 30.0 10 < th dose independent rect. 22 5
956 107.62 humidity 50.0 10 > th dose independent rect. 22 5
959 107.62 atmosphere 995.0 10 > th dose independent rect. 22 5
960 107.62 radiation 1.0 10 < th dose independent rect. 22 5
965 107.62 temperature 10.0 10 > th dose independent rect. 3 19
967 107.62 atmosphere 1015.0 10 < th dose independent rect. 3 19
968 107.62 radiation 1.0 10 < th dose dependent rect. 22 5
987 107.67 precipitation 0.1 10 < th dose independent rect. 22 5
988 107.67 precipitation 0.1 10 < th dose dependent rect. 22 5