FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0207600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.54 (0.0534) R2 : 0.313
β1 : -2.17 (0.196) R2dD : 0.194 R2D : 0.123
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.4 (0.253) R2dE : 0.14 R2E : 0.113
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.452 (0.115) R2dN8 : 0.0319 R2N8 : 0.0162
σ : 0.997
deviance : 457.81
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 92.15
memory length : 44
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.78
open length of G : 1.57

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
452.7 1 3.56 -2.35 0.248 2.7 -1.3 -4.03 -0.417 21.3 93 79 3.33 1.67
450.94 0.989 3.54 -2.23 0.24 2.56 -1.1 -- -0.406 21.4 93 53 3.69 1.58
453.53 0.992 3.57 -2.26 0.166 2.6 -- -3.77 -0.44 21.4 92 58 3.51 1.67
454.36 0.993 3.54 -2.21 0.261 2.45 -- -- -0.454 21.9 92.06 45 3.78 1.57
450.81 0.989 3.55 -2.33 -- 3.09 -- -6.04 -0.429 -- 92.96 44 3.73 1.53
528.39 1.08 3.57 -2.03 0.595 -- 0.108 -- -0.612 3.36 -- -- -- --
528.41 1.08 3.57 -2.04 0.594 -- -- -- -0.613 3.26 -- -- -- --
457.81 0.997 3.54 -2.17 -- 2.4 -- -- -0.452 -- 92.15 44 3.78 1.57
578.21 1.12 3.49 -- 0.232 2.21 -- -- -0.209 21.7 92 42 3.75 1.63
548.39 1.09 3.57 -2.01 -- -- -- -- -0.597 -- -- -- -- --
637.62 1.18 3.52 -- 0.554 -- -- -- -0.386 3.26 -- -- -- --
580 1.12 3.49 -- -- 2.03 -- -- -0.229 -- 92.21 32 3.81 1.7
655 1.19 3.52 -- -- -- -- -- -0.374 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 456.33 temperature 30.0 720 > th dose dependent rect. 18 1
16 459.37 humidity 90.0 90 > th dose dependent rect. 3 2
17 459.81 wind 3.0 90 < th dose dependent rect. 3 2
32 460.08 humidity 90.0 90 > th dose independent rect. 3 2
33 460.32 radiation 20.0 14400 < th dose independent rect. 3 3
36 463.92 humidity 50.0 1440 < th dose independent rect. 16 1
38 464.09 temperature 25.0 90 < th dose independent rect. 3 2
39 464.46 humidity 50.0 1440 < th dose dependent rect. 16 1
41 465.02 wind 1.0 90 < th dose independent rect. 4 1
43 465.78 temperature 20.0 90 > th dose dependent rect. 3 2
51 468.35 temperature 20.0 90 > th dose independent rect. 3 2
52 468.38 temperature 15.0 90 > th dose independent rect. 5 22
55 469.01 humidity 50.0 1440 > th dose independent rect. 16 1
58 470.03 precipitation 0.1 90 < th dose independent rect. 5 22
59 470.03 precipitation 0.1 90 < th dose dependent rect. 5 22
61 470.70 atmosphere 995.0 90 > th dose independent rect. 5 22
65 471.06 precipitation 0.1 90 < th dose independent rect. 3 2
66 471.06 precipitation 0.1 90 < th dose dependent rect. 3 2
67 471.14 wind 9.0 90 < th dose independent rect. 5 22
69 471.18 wind 7.0 90 < th dose independent rect. 3 2
70 471.22 temperature 25.0 30 < th dose dependent rect. 4 1
73 471.71 radiation 1.0 90 < th dose dependent rect. 3 2
75 471.79 temperature 10.0 90 > th dose independent rect. 3 2
78 471.79 humidity 50.0 90 > th dose independent rect. 3 2
81 471.79 atmosphere 995.0 90 > th dose independent rect. 3 2
82 471.79 atmosphere 1010.0 90 < th dose independent rect. 3 2
84 471.79 radiation 20.0 90 < th dose independent rect. 3 2
88 471.80 radiation 40.0 90 < th dose dependent rect. 3 2
92 471.87 radiation 1.0 90 < th dose independent rect. 3 2
95 471.96 wind 3.0 10 < th dose dependent rect. 3 3
96 472.28 radiation 30.0 4320 > th dose independent rect. 7 1
112 472.67 temperature 30.0 720 > th dose independent rect. 18 1
126 472.77 atmosphere 1015.0 90 < th dose dependent rect. 3 2
128 473.20 atmosphere 1005.0 90 > th dose independent rect. 3 3
131 473.39 atmosphere 1005.0 90 > th dose independent rect. 4 1
139 474.49 radiation 20.0 14400 < th dose independent rect. 18 12
141 474.71 atmosphere 1005.0 10 > th dose independent rect. 4 2
165 475.92 temperature 20.0 10 > th dose independent rect. 4 3
168 476.19 temperature 15.0 10 > th dose independent rect. 6 21
174 476.60 wind 9.0 1440 < th dose independent rect. 4 2
175 476.60 temperature 10.0 1440 > th dose independent rect. 4 2
178 476.60 temperature 30.0 1440 < th dose independent rect. 4 2
182 476.60 humidity 50.0 1440 > th dose independent rect. 4 2
191 476.60 atmosphere 995.0 1440 > th dose independent rect. 4 2
192 476.60 atmosphere 1015.0 1440 < th dose independent rect. 4 2
193 476.60 radiation 20.0 1440 < th dose independent rect. 4 2
202 476.60 temperature 10.0 1440 > th dose independent rect. 6 22
210 477.06 temperature 20.0 270 > th dose dependent rect. 1 4
211 477.14 humidity 90.0 10 > th dose dependent rect. 3 3
215 477.50 atmosphere 995.0 90 > th dose dependent rect. 3 2
223 478.22 radiation 40.0 90 < th dose independent rect. 5 22
236 478.97 temperature 10.0 720 > th dose dependent rect. 17 5
239 479.12 humidity 90.0 10 > th dose independent rect. 4 2
245 479.41 radiation 20.0 4320 > th dose dependent rect. 16 16
251 479.63 wind 9.0 43200 < th dose independent rect. 20 10
252 479.63 radiation 40.0 10 < th dose independent rect. 7 20
262 479.72 humidity 70.0 720 < th dose independent rect. 18 13
281 479.78 humidity 70.0 720 < th dose independent rect. 18 2
296 479.87 temperature 15.0 270 > th dose independent rect. 5 19
308 480.06 wind 9.0 43200 > th dose independent rect. 20 10
319 480.29 wind 1.0 270 > th dose independent rect. 1 3
322 480.31 wind 7.0 43200 > th dose dependent rect. 20 10
332 480.45 atmosphere 1010.0 10 < th dose independent rect. 3 4
336 480.50 temperature 25.0 720 > th dose dependent rect. 21 2
338 480.54 atmosphere 1015.0 90 < th dose independent rect. 5 22
344 480.67 atmosphere 995.0 43200 > th dose independent rect. 17 21
353 480.77 wind 3.0 43200 > th dose dependent rect. 20 12
360 480.95 atmosphere 995.0 43200 < th dose independent rect. 17 22
364 481.04 radiation 30.0 4320 > th dose dependent rect. 7 1
385 481.15 wind 7.0 43200 < th dose independent rect. 20 18
389 481.19 wind 5.0 43200 > th dose independent rect. 6 1
392 481.22 atmosphere 995.0 43200 > th dose independent rect. 21 18
393 481.23 wind 7.0 43200 > th dose independent rect. 20 18
411 481.27 atmosphere 1005.0 270 > th dose independent rect. 1 4
413 481.29 temperature 30.0 1440 < th dose independent rect. 18 11
421 481.32 atmosphere 995.0 43200 < th dose independent rect. 17 20
431 481.38 wind 3.0 43200 > th dose dependent rect. 20 14
435 481.40 wind 5.0 43200 < th dose independent rect. 19 13
444 481.49 wind 7.0 43200 > th dose independent rect. 19 16
445 481.50 wind 5.0 43200 < th dose independent rect. 6 1
450 481.58 temperature 20.0 270 > th dose independent rect. 1 4
461 481.67 radiation 1.0 90 < th dose dependent rect. 3 7
464 481.69 humidity 70.0 720 < th dose dependent rect. 18 13
465 481.70 wind 7.0 43200 < th dose independent rect. 19 16
467 481.71 atmosphere 995.0 43200 > th dose independent sin 5 NA
468 481.71 humidity 70.0 720 < th dose dependent rect. 18 2
482 481.75 wind 7.0 43200 > th dose dependent rect. 20 18
483 481.76 wind 5.0 43200 > th dose independent rect. 19 13
507 481.87 radiation 20.0 30 < th dose dependent rect. 3 4
516 481.92 atmosphere 995.0 43200 < th dose dependent sin 16 NA
521 481.95 wind 5.0 43200 < th dose independent sin 10 NA
532 482.05 wind 3.0 43200 > th dose dependent sin 9 NA
540 482.07 temperature 30.0 1440 < th dose dependent rect. 18 3
546 482.13 wind 5.0 43200 > th dose dependent sin 5 NA
565 482.15 temperature 30.0 1440 < th dose dependent rect. 19 1
578 482.24 wind 5.0 43200 > th dose independent sin 10 NA
584 482.26 wind 5.0 43200 > th dose dependent rect. 24 15
589 482.27 atmosphere 995.0 43200 < th dose dependent rect. 12 14
591 482.29 wind 5.0 43200 > th dose dependent rect. 6 1
638 482.40 temperature 30.0 1440 < th dose independent rect. 18 3
656 482.48 humidity 50.0 14400 > th dose independent rect. 19 9
662 482.48 radiation 40.0 30 < th dose dependent rect. 7 20
669 482.50 temperature 25.0 10 < th dose independent rect. 4 2
670 482.50 precipitation 0.1 10 < th dose independent rect. 6 21
671 482.50 precipitation 0.1 10 < th dose dependent rect. 6 21
693 482.56 atmosphere 995.0 43200 < th dose independent sin 4 NA
698 482.58 wind 7.0 43200 < th dose independent sin 6 NA
718 482.65 radiation 30.0 4320 < th dose independent rect. 23 9
726 482.67 temperature 10.0 14400 > th dose dependent rect. 18 1
738 482.70 temperature 30.0 1440 < th dose independent rect. 18 1
743 482.72 wind 7.0 43200 < th dose independent rect. 23 15
747 482.73 wind 7.0 43200 > th dose independent sin 6 NA
756 482.75 radiation 30.0 4320 < th dose independent rect. 21 11
759 482.76 wind 7.0 43200 < th dose independent rect. 3 11
780 482.84 wind 7.0 43200 > th dose independent rect. 23 15
800 482.91 wind 5.0 43200 > th dose dependent rect. 9 1
805 482.92 atmosphere 995.0 43200 < th dose independent rect. 21 19
808 482.93 radiation 30.0 4320 < th dose independent rect. 17 15
817 482.95 temperature 30.0 14400 < th dose dependent rect. 18 1
824 482.99 wind 7.0 43200 > th dose independent rect. 2 12
857 483.07 wind 5.0 43200 < th dose independent rect. 20 8
867 483.10 wind 9.0 43200 > th dose independent sin 10 NA
883 483.15 wind 9.0 43200 < th dose independent sin 10 NA
950 483.34 wind 3.0 43200 > th dose dependent rect. 2 9
958 483.36 atmosphere 995.0 10 > th dose independent rect. 6 21
981 483.41 humidity 70.0 720 > th dose independent rect. 18 7