BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0207600 Os01g0207600|Os01g0207600
(612 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G14920.1 | chr3:5018275-5020104 FORWARD LENGTH=610 453 e-127
AT5G05480.1 | chr5:1622338-1624164 REVERSE LENGTH=609 296 2e-80
>AT3G14920.1 | chr3:5018275-5020104 FORWARD LENGTH=610
Length = 609
Score = 453 bits (1165), Expect = e-127, Method: Compositional matrix adjust.
Identities = 236/526 (44%), Positives = 315/526 (59%), Gaps = 39/526 (7%)
Query: 71 FGFTYTKPPVTAAYSPPDCLAAAGGGAPAISLAVLEWRATCRGVQFDRIFGVWLGGVELL 130
FG+TY KPPV + Y+ P ++ S VLE+++T +G QFDRIFGVWL GVE+L
Sbjct: 84 FGYTYAKPPVLSNYTLPSHCSSR-----EFSKIVLEFKSTSQGRQFDRIFGVWLDGVEIL 138
Query: 131 RSCTAEPRPNGIVWSVSKDVTRYASLLAAGNST-LAVYLGNLIDDQYTGVYHANITLHLY 189
RSCTAEPRPNGIVWSV KDVT+Y SLL + L+VYLGNLID YTGVYH ++ H Y
Sbjct: 139 RSCTAEPRPNGIVWSVEKDVTKYHSLLVKNETQILSVYLGNLIDKTYTGVYHVDVIFHFY 198
Query: 190 FGXXXXXXXX-XXXXXXDIIVPVSRSLPLNDGLWFQIQNATDVESASIVLPSNTYRAVLE 248
D+I+P+SR+LPLNDGLWF+I N+ D + +P N YRAVLE
Sbjct: 199 QSESNLQDVSGYSSSKADMILPISRNLPLNDGLWFEIVNSNDTKYKEFEIPRNVYRAVLE 258
Query: 249 VYVSFHGDDEFWYTHTPD-----------GNGPFREVTVLVDGDLVGAVWPFPVIFTGGI 297
VYVSFH +DEFWY + P+ GNGPFREV V +DGD+ GAVWPFPV+FTGGI
Sbjct: 259 VYVSFHENDEFWYGNLPNDYVTANNLSVAGNGPFREVVVSLDGDIAGAVWPFPVVFTGGI 318
Query: 298 NPLLWRPITGIGSFNLPTYDIELTPFLAKLLDGKAHELAFAVTNAVDVWYVDGNLHLWLD 357
NPLLWRPIT IGSF+LP+YDIE+TPFL LLDGK H++ F+VTNA++VWY+D NLHLWLD
Sbjct: 319 NPLLWRPITAIGSFDLPSYDIEITPFLGSLLDGKTHKVGFSVTNALNVWYIDANLHLWLD 378
Query: 358 PMTTATTGSLVSYDAPRLAAVNTSHTTASRFDGLSERYYYHTTASRRISAAGWVESPSHG 417
G ++ + L ++ S F GL+ + T A R I++ G V+S SHG
Sbjct: 379 QEKEIVEGKVLDFSRSSLEI-----SSVSDFKGLNGN--FTTKAKRSITSVGLVKS-SHG 430
Query: 418 RITTNATQTFAFENTYAFAGDGSAETVNQXXXXXXXXXXXXXXXXXLYSRQAHHDFPLYV 477
I TNA Q F++EN DG+ + ++Q +Y+ ++ FP Y+
Sbjct: 431 DIITNANQEFSYENKMVLGKDGNLQIIDQ-LIQADDRIHAKRASREIYAAKSIKSFPFYL 489
Query: 478 D---IEAKTSPH--AADVTYTVAREYRETAIAAGRWLSSGTPPRRYSLRDTQSGAVDVEM 532
D +E + + + A+V+ E E+ R S L + Q G + +
Sbjct: 490 DSDTLEQQNNTYLAVANVSMAFNEERSESDKGLMRTFKS-------KLENKQEGQGVMVV 542
Query: 533 RDGNAVSATWGTRQTYRLEATDGCYFRNVTSSGYSVASDESDEVCS 578
++ VS T+Q Y +D CYFRN++S Y++ D+ + VC
Sbjct: 543 KNNLVVSGYGSTQQVYNYVGSDQCYFRNISSYNYTILYDKVESVCK 588
>AT5G05480.1 | chr5:1622338-1624164 REVERSE LENGTH=609
Length = 608
Score = 296 bits (759), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 180/499 (36%), Positives = 246/499 (49%), Gaps = 39/499 (7%)
Query: 97 APAISLAVLEWRATCRGVQFDRIFGVWLGGVELLRSCTAEPRPNGIVWSVSKDVTRYASL 156
+P S VL+ RA G Q+DRI G+WLGGVELLR+ TAEP P+GI W+V KDV+RY+SL
Sbjct: 95 SPPWSYVVLDLRAASSGDQYDRISGLWLGGVELLRTSTAEPSPSGIFWNVRKDVSRYSSL 154
Query: 157 LAAGNSTLAVYLGNLIDDQYTGVYHANITLHLY-FGXXXXX-----------XXXXXXXX 204
+ + + L N+++D YTG+YH N+TL Y F
Sbjct: 155 FMRSDLNVTMMLENIVNDVYTGIYHINVTLIFYEFNPIASNLKISNRLGFVDSQKRDQTP 214
Query: 205 XDIIVPVSRSLPLNDGLWFQIQNATDVESASIVLPSNTYRAVLEVYVSFHGDDEFWYTHT 264
D+I+PV N G WF I+N + S I +PSNT + VLE+YVSFHG+DEFWY++
Sbjct: 215 ADLIIPVCDG--GNRGFWFMIENPRETYSKGIQIPSNTRQIVLELYVSFHGNDEFWYSNP 272
Query: 265 PD------------GNGPFREVTVLVDGDLVGAVWPFPVIFTGGINPLLWRPITGIGSFN 312
P+ GNG +REV V +DG VG+ PFPVIFTGGINPL W P+ IG+FN
Sbjct: 273 PNSYIRTNNLTTGRGNGAYREVFVKIDGRYVGSEVPFPVIFTGGINPLFWEPVVAIGAFN 332
Query: 313 LPTYDIELTPFLAKLLDGKAHELAFAVTNAVDVWYVDGNLHLWLDPMTTATTGSLVSYDA 372
LP+YD++LTPFL LLDGK+HE AF V + + W VD NLHLWLD ++ YD+
Sbjct: 333 LPSYDMDLTPFLGLLLDGKSHEFAFGVNDGISYWLVDANLHLWLDHGSSNVEAGSRLYDS 392
Query: 373 PRLAAVNTSHTTASRFDGLSERYYYHTTASRRISAAGWVESPSHGRITTNATQTFAFENT 432
P + + DG + A GWV S S G +TT F ++
Sbjct: 393 PSRHMMRQEQ--LEQLDG-----SFKVEAEVSSEYDGWVRS-SKGNLTTMVKSMFKVDSL 444
Query: 433 YAFAGDGSAETVNQXXXXXXXXXXXXXXXXXLYSRQAHHDFPLYVDIEAKTSPHAADVTY 492
F +G+ + V Q + +PL V TY
Sbjct: 445 VRFEKNGTYKRVEQRVKTERIVEVTSESGKPVNRVVHQRTYPLTVITSTLRGLTNDKDTY 504
Query: 493 TVAREYRETAIAAGRWLSSGTPPRRYSLRDTQSGAVDVEMRDGNAVSATWGTRQTYRLEA 552
+ + A S G + R G ++VE D N ++ T+Q+
Sbjct: 505 MLV---TNVSHALNETHSDGEALIQVYSRQDSEGWMEVE--DHNVLAGEASTKQSLSYID 559
Query: 553 TDGCYFRNVTSSGYSVASD 571
CY R + ++ +A D
Sbjct: 560 EFSCYSRTIVAANGEIAQD 578
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.135 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,732,242
Number of extensions: 461434
Number of successful extensions: 901
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 893
Number of HSP's successfully gapped: 2
Length of query: 612
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 508
Effective length of database: 8,255,305
Effective search space: 4193694940
Effective search space used: 4193694940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)