BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0200300 Os01g0200300|AK112091
(394 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0200300 Hypothetical protein 736 0.0
Os03g0640800 Similar to HD-Zip protein (Homeodomain transcr... 429 e-120
Os10g0480200 Similar to Rolled leaf1 394 e-110
Os12g0612700 Similar to HD-Zip protein (Homeodomain transcr... 389 e-108
Os03g0109400 Homeobox domain containing protein 380 e-106
Os06g0722200 Hypothetical protein 105 8e-23
Os06g0719900 Similar to CORONA 104 9e-23
Os06g0722500 87 3e-17
>Os01g0200300 Hypothetical protein
Length = 394
Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/394 (93%), Positives = 370/394 (93%)
Query: 1 MLLQDVSPPSLLQFLREHRSQWADSNLDAFFASTMKPNFCNLPMSRLGGFSGQVILPLAH 60
MLLQDVSPPSLLQFLREHRSQWADSNLDAFFASTMKPNFCNLPMSRLGGFSGQVILPLAH
Sbjct: 1 MLLQDVSPPSLLQFLREHRSQWADSNLDAFFASTMKPNFCNLPMSRLGGFSGQVILPLAH 60
Query: 61 TFEPEEFLEVIKLGNASNYQDTLVHRDLFLLQMYNGVEESSAGTCSELIFAPIDASFSDD 120
TFEPEEFLEVIKLGNASNYQDTLVHRDLFLLQMYNGVEESSAGTCSELIFAPIDASFSDD
Sbjct: 61 TFEPEEFLEVIKLGNASNYQDTLVHRDLFLLQMYNGVEESSAGTCSELIFAPIDASFSDD 120
Query: 121 SPLLPSGFRIIPIDSPLDTSSPNCTLDLASTLEAATPRXXXXXXXXXXXXXXXXXXXXXX 180
SPLLPSGFRIIPIDSPLDTSSPNCTLDLASTLEAATPR
Sbjct: 121 SPLLPSGFRIIPIDSPLDTSSPNCTLDLASTLEAATPRSRISGVNGGGGGCAAAAASSSS 180
Query: 181 XXVMTIAFQFAFDGHLQDSVAAMARQYMRNIISSVQRIAVALSSSRLVPPGAGAAAAQLS 240
VMTIAFQFAFDGHLQDSVAAMARQYMRNIISSVQRIAVALSSSRLVPPGAGAAAAQLS
Sbjct: 181 KAVMTIAFQFAFDGHLQDSVAAMARQYMRNIISSVQRIAVALSSSRLVPPGAGAAAAQLS 240
Query: 241 PVTPEAATLPRWICQSYRFHFGDELIKSVDANSSNESILKAVWHHPSAILCCSLKAMPVF 300
PVTPEAATLPRWICQSYRFHFGDELIKSVDANSSNESILKAVWHHPSAILCCSLKAMPVF
Sbjct: 241 PVTPEAATLPRWICQSYRFHFGDELIKSVDANSSNESILKAVWHHPSAILCCSLKAMPVF 300
Query: 301 TFANQSGLDMLETTLVALQDMTLEKVFDDQGRKNLCTELPNIMEQGMACMEGGVCVSSVG 360
TFANQSGLDMLETTLVALQDMTLEKVFDDQGRKNLCTELPNIMEQGMACMEGGVCVSSVG
Sbjct: 301 TFANQSGLDMLETTLVALQDMTLEKVFDDQGRKNLCTELPNIMEQGMACMEGGVCVSSVG 360
Query: 361 RAASYEKAVAWKVVDGDGGGAHCICFMFINWTFL 394
RAASYEKAVAWKVVDGDGGGAHCICFMFINWTFL
Sbjct: 361 RAASYEKAVAWKVVDGDGGGAHCICFMFINWTFL 394
>Os03g0640800 Similar to HD-Zip protein (Homeodomain transcription factor)
(ATHB-14) (Homeodomain-leucine zipper protein 14)
Length = 859
Score = 429 bits (1103), Expect = e-120, Method: Compositional matrix adjust.
Identities = 214/396 (54%), Positives = 288/396 (72%), Gaps = 17/396 (4%)
Query: 1 MLLQDVSPPSLLQFLREHRSQWADSNLDAFFASTMKPNFCNLPMSRLGGFSG-QVILPLA 59
MLLQ+V P L++FLREHRS+WAD +DA+ A+ ++ + +P R GGF G QVILPLA
Sbjct: 479 MLLQNVPPALLVRFLREHRSEWADPGVDAYSAAALRASPYAVPGLRAGGFMGSQVILPLA 538
Query: 60 HTFEPEEFLEVIKL-GNASNYQDTLVHRDLFLLQMYNGVEESSAGTCSELIFAPIDASFS 118
HT E EEFLEVI+L G++ + + ++ RD++LLQ+ +GV+E++AG C++L+FAPID SF+
Sbjct: 539 HTLEHEEFLEVIRLEGHSLCHDEVVLSRDMYLLQLCSGVDENAAGACAQLVFAPIDESFA 598
Query: 119 DDSPLLPSGFRIIPIDSPLDTSSPNCTLDLASTLEAATPRXXXXXXXXXXXXXXXXXXXX 178
DD+PLLPSGFR+IP+D D S TLDLASTLE +
Sbjct: 599 DDAPLLPSGFRVIPLDGKTDAPSATRTLDLASTLEVGS--------GGTTRASSDTSSTC 650
Query: 179 XXXXVMTIAFQFAFDGHLQDSVAAMARQYMRNIISSVQRIAVALSSSRLVPPGAGAAAAQ 238
V+TIAFQF+++ HL++SVAAMARQY+R +++SVQR+A+A++ SRL G +
Sbjct: 651 NTRSVLTIAFQFSYENHLRESVAAMARQYVRTVVASVQRVAMAIAPSRL----GGQIETK 706
Query: 239 LSPVTPEAATLPRWICQSYRFHFGDELIKSVDANSSNESILKAVWHHPSAILCCSLKAMP 298
P +PEA TL RWI +SYRFH G +L+++ D+ S++ S LKA+W H +I+CCSLKA P
Sbjct: 707 NPPGSPEAHTLARWIGRSYRFHTGADLLRT-DSQSTDSS-LKAMWQHSDSIMCCSLKAAP 764
Query: 299 VFTFANQSGLDMLETTLVALQDMTLEKVFDDQGRKNLCTELPNIMEQGMACMEGGVCVSS 358
VFTFANQ+GLDMLETTL+ALQD++LEK+ DD GRK LCTE P IM+QG A + GGVCVSS
Sbjct: 765 VFTFANQAGLDMLETTLIALQDISLEKILDDDGRKALCTEFPKIMQQGFAYLPGGVCVSS 824
Query: 359 VGRAASYEKAVAWKVVDGDGGGAHCICFMFINWTFL 394
+GR SYE+AVAWKV+ D HC+ FMF+NW+F+
Sbjct: 825 MGRPVSYEQAVAWKVLS-DDDTPHCLAFMFVNWSFV 859
>Os10g0480200 Similar to Rolled leaf1
Length = 840
Score = 394 bits (1012), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/396 (51%), Positives = 270/396 (68%), Gaps = 18/396 (4%)
Query: 1 MLLQDVSPPSLLQFLREHRSQWADSNLDAFFASTMKPNFCNLPMSRLGGFSG-QVILPLA 59
MLLQ V P L++FLREHRS+WAD N DA+ AS++K + C+LP R FSG Q+I+PLA
Sbjct: 461 MLLQSVPPAVLVRFLREHRSEWADYNFDAYSASSLKTSSCSLPGLRPMRFSGSQIIMPLA 520
Query: 60 HTFEPEEFLEVIKL-GNASNYQDTLVHRDLFLLQMYNGVEESSAGTCSELIFAPIDASFS 118
HT E EE LEV++L G A + D L+ RD+ LLQ+ G++E S G+C +L+ APID F
Sbjct: 521 HTVENEEILEVVRLEGQALTHDDGLMSRDIHLLQLCTGIDEKSMGSCFQLVSAPIDELFP 580
Query: 119 DDSPLLPSGFRIIPIDSPLDTSSPNCTLDLASTLEAATPRXXXXXXXXXXXXXXXXXXXX 178
DD+PL+ SGFR+IP+D D + TLDLAS+LE +
Sbjct: 581 DDAPLISSGFRVIPLDMKTDGTPAGRTLDLASSLEVGS---------TAQPTGDASMDDC 631
Query: 179 XXXXVMTIAFQFAFDGHLQDSVAAMARQYMRNIISSVQRIAVALSSSRLVPPGAGAAAAQ 238
V+TIAFQF ++ HLQDSVA MARQY+R+I+SSVQR+++A+S SR G A
Sbjct: 632 NLRSVLTIAFQFPYEMHLQDSVATMARQYVRSIVSSVQRVSMAISPSR---SGLNAGQKI 688
Query: 239 LSPVTPEAATLPRWICQSYRFHFGDELIKSVDANSSNESILKAVWHHPSAILCCSLKAMP 298
+S PEA TL RWICQSY+FH G EL++ D + E++LK +W + AILCCS K P
Sbjct: 689 ISGF-PEAPTLARWICQSYQFHLGVELLRQAD--DAGEALLKMLWDYEDAILCCSFKEKP 745
Query: 299 VFTFANQSGLDMLETTLVALQDMTLEKVFDDQGRKNLCTELPNIMEQGMACMEGGVCVSS 358
VFTFAN+ GL+MLET+LVALQD++L+K+FD+ GRK L E+P +MEQG + GGVC+S
Sbjct: 746 VFTFANEMGLNMLETSLVALQDLSLDKIFDEAGRKALYNEIPKLMEQGYVYLPGGVCLSG 805
Query: 359 VGRAASYEKAVAWKVVDGDGGGAHCICFMFINWTFL 394
+GR S+E+AVAWKV+ G+ HC+ F F+NW+F+
Sbjct: 806 MGRHVSFEQAVAWKVL-GEDNNVHCLAFCFVNWSFV 840
>Os12g0612700 Similar to HD-Zip protein (Homeodomain transcription factor)
(ATHB-14) (Homeodomain-leucine zipper protein 14)
Length = 855
Score = 389 bits (999), Expect = e-108, Method: Compositional matrix adjust.
Identities = 200/396 (50%), Positives = 271/396 (68%), Gaps = 18/396 (4%)
Query: 1 MLLQDVSPPSLLQFLREHRSQWADSNLDAFFASTMKPNFCNLPMSRLGGFSG-QVILPLA 59
MLLQ+V P L++FLREHRS+WAD +DA+ A++++ + +P R GF G QVILPLA
Sbjct: 476 MLLQNVPPALLVRFLREHRSEWADPGVDAYSAASLRASPYAVPGLRTSGFMGSQVILPLA 535
Query: 60 HTFEPEEFLEVIKL-GNASNYQDTLVHRDLFLLQMYNGVEESSAGTCSELIFAPIDASFS 118
HT E EEFLEVI+L G+ ++ + L+ RD++LLQ+ +GV+E++ ++L+FAPID SF+
Sbjct: 536 HTLEHEEFLEVIRLEGHGFSHDEVLLSRDMYLLQLCSGVDENATSASAQLVFAPIDESFA 595
Query: 119 DDSPLLPSGFRIIPIDSPLDTSSPNCTLDLASTLEAATPRXXXXXXXXXXXXXXXXXXXX 178
DD+PLLPSGFR+IP+D+ +D S TLDLAS LE
Sbjct: 596 DDAPLLPSGFRVIPLDTKMDGPSATRTLDLASALEVGP---------GGASRASVEASGT 646
Query: 179 XXXXVMTIAFQFAFDGHLQDSVAAMARQYMRNIISSVQRIAVALSSSRLVPPGAGAAAAQ 238
V+TIAFQF+++ HL++SVAAMAR Y+R +++SVQR+AVA++ SRL P +
Sbjct: 647 CNRSVLTIAFQFSYENHLRESVAAMARSYVRAVMASVQRVAVAIAPSRLGP----QIGMK 702
Query: 239 LSPVTPEAATLPRWICQSYRFHFGDELIKSVDANSSNESILKAVWHHPSAILCCSLKAMP 298
P +PEA TL WI +SYR H G + I+ D ++ S L +W H AILCCSLK P
Sbjct: 703 HPPASPEALTLASWIGRSYRAHTGAD-IRWSDTEDAD-SPLALLWKHSDAILCCSLKPAP 760
Query: 299 VFTFANQSGLDMLETTLVALQDMTLEKVFDDQGRKNLCTELPNIMEQGMACMEGGVCVSS 358
+FTFAN +GLD+LETTLV LQD++LE + DD+GRK LC+E P IM+QG + GGVC SS
Sbjct: 761 MFTFANNAGLDILETTLVNLQDISLEMILDDEGRKALCSEFPKIMQQGFTYLPGGVCKSS 820
Query: 359 VGRAASYEKAVAWKVVDGDGGGAHCICFMFINWTFL 394
+GR ASYE+AVAWKV+ D HC+ FM +NWTF+
Sbjct: 821 MGRQASYEQAVAWKVLS-DDDAPHCLAFMLVNWTFM 855
>Os03g0109400 Homeobox domain containing protein
Length = 839
Score = 380 bits (977), Expect = e-106, Method: Compositional matrix adjust.
Identities = 195/396 (49%), Positives = 270/396 (68%), Gaps = 18/396 (4%)
Query: 1 MLLQDVSPPSLLQFLREHRSQWADSNLDAFFASTMKPNFCNLPMSRLGGFSG-QVILPLA 59
MLLQ V P L++FLREHRS+WAD N+DA+ AST+K + C+L R FSG Q+I+PLA
Sbjct: 460 MLLQSVPPAVLVRFLREHRSEWADYNIDAYLASTLKTSACSLTGLRPMRFSGSQIIIPLA 519
Query: 60 HTFEPEEFLEVIKL-GNASNYQDTLVHRDLFLLQMYNGVEESSAGTCSELIFAPIDASFS 118
HT E EE LEV++L G + + L+ RD+ LLQ+ G++E S G+ +L+FAPID F
Sbjct: 520 HTVENEEILEVVRLEGQPLTHDEALLSRDIHLLQLCTGIDEKSVGSSFQLVFAPID-DFP 578
Query: 119 DDSPLLPSGFRIIPIDSPLDTSSPNCTLDLASTLEAATPRXXXXXXXXXXXXXXXXXXXX 178
D++PL+ SGFR+IP+D D +S TLDLAS+LE +
Sbjct: 579 DETPLISSGFRVIPLDMKTDGASSGRTLDLASSLEVGS--------ATAQASGDASADDC 630
Query: 179 XXXXVMTIAFQFAFDGHLQDSVAAMARQYMRNIISSVQRIAVALSSSRLVPPGAGAAAAQ 238
V+TIAFQF ++ HLQDSVAAMARQY+R+I+S+VQR+++A+S S+ G A
Sbjct: 631 NLRSVLTIAFQFPYELHLQDSVAAMARQYVRSIVSAVQRVSMAISPSQT---GLNAGQRI 687
Query: 239 LSPVTPEAATLPRWICQSYRFHFGDELIKSVDANSSNESILKAVWHHPSAILCCSLKAMP 298
+S PEAATL RW+CQSY +H G EL+ D ++ E +LK +WH+ AILCCS K P
Sbjct: 688 ISGF-PEAATLARWVCQSYHYHLGVELLSQSDGDA--EQLLKMLWHYQDAILCCSFKEKP 744
Query: 299 VFTFANQSGLDMLETTLVALQDMTLEKVFDDQGRKNLCTELPNIMEQGMACMEGGVCVSS 358
VFTFAN++GLDMLET+LVALQD+TL+++FD+ G++ L + +P +MEQG + GVC+S
Sbjct: 745 VFTFANKAGLDMLETSLVALQDLTLDRIFDEPGKEALFSNIPKLMEQGHVYLPSGVCMSG 804
Query: 359 VGRAASYEKAVAWKVVDGDGGGAHCICFMFINWTFL 394
+GR S+++AVAWKV+ D HC+ F F+NW+F+
Sbjct: 805 MGRHVSFDQAVAWKVLAED-SNVHCLAFCFVNWSFV 839
>Os06g0722200 Hypothetical protein
Length = 113
Score = 105 bits (261), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 56/92 (60%), Positives = 57/92 (61%), Gaps = 32/92 (34%)
Query: 34 TMKPNFCNLPMSRLGGFSGQVILPLAHTFEPEE--------------------------- 66
TMKPNFCNLPMSRLGGFSGQVILPLAHTFEP E
Sbjct: 20 TMKPNFCNLPMSRLGGFSGQVILPLAHTFEPAEVSPSSTVCRLQKRSCPILFSCSMFWCN 79
Query: 67 -----FLEVIKLGNASNYQDTLVHRDLFLLQM 93
FLEVIKLGN NYQDTLVHRDLFLLQ+
Sbjct: 80 HLLFQFLEVIKLGNTRNYQDTLVHRDLFLLQV 111
>Os06g0719900 Similar to CORONA
Length = 113
Score = 104 bits (260), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 56/92 (60%), Positives = 57/92 (61%), Gaps = 32/92 (34%)
Query: 34 TMKPNFCNLPMSRLGGFSGQVILPLAHTFEPEE--------------------------- 66
TMKPNFCNLPMSRLGGFSGQVILPLAHTFEP E
Sbjct: 20 TMKPNFCNLPMSRLGGFSGQVILPLAHTFEPAEVSPSSTVCRLQKRSCPILFSCSMFWCN 79
Query: 67 -----FLEVIKLGNASNYQDTLVHRDLFLLQM 93
FLEVIKLGN NYQDTLVHRDLFLLQ+
Sbjct: 80 HLLFQFLEVIKLGNTRNYQDTLVHRDLFLLQV 111
>Os06g0722500
Length = 427
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/61 (77%), Positives = 51/61 (83%), Gaps = 1/61 (1%)
Query: 183 VMTIAFQFAFDGHLQDSVAAMARQYMRNIISSVQRIAVALSSSRLVPPGAGAAAAQLSPV 242
VMTIAFQFAF+ HLQ SV AMA+QYM +IISSVQRIAV LSSSRLVPPG AAA Q +P
Sbjct: 334 VMTIAFQFAFESHLQGSVPAMAQQYMCSIISSVQRIAVVLSSSRLVPPGV-AAATQHAPA 392
Query: 243 T 243
T
Sbjct: 393 T 393
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.134 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,178,507
Number of extensions: 537851
Number of successful extensions: 1639
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1613
Number of HSP's successfully gapped: 8
Length of query: 394
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 291
Effective length of database: 11,657,759
Effective search space: 3392407869
Effective search space used: 3392407869
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)