Os06g0719900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CORONA.
FiT-DB / Search/ Help/ Sample detail
|
Os06g0719900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to CORONA.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.14 | 0.352 | 11.2 | -0.837 | 0.011 | -1.08 | 1.11 | 1.24 | 0.346 | 2.97 | 21.2 | 214 | -- | -- |
| 56.83 | 0.351 | 11.2 | -1.05 | 0.146 | -0.969 | 0.676 | -- | 0.3 | 1.09 | 19.21 | 274 | -- | -- |
| 58 | 0.355 | 11.2 | -1.05 | 0.203 | -1.09 | -- | 0.0328 | 0.307 | 21.6 | 19.44 | 314 | -- | -- |
| 57.99 | 0.355 | 11.2 | -1.05 | 0.208 | -1.12 | -- | -- | 0.303 | 21.4 | 19.43 | 306 | -- | -- |
| 59.28 | 0.359 | 11.2 | -1.08 | -- | -1.08 | -- | -0.101 | 0.285 | -- | 19.74 | 207 | -- | -- |
| 74.89 | 0.406 | 11.2 | -1.29 | 0.381 | -- | 1.08 | -- | 0.114 | 3.09 | -- | -- | -- | -- |
| 78.76 | 0.416 | 11.2 | -1.31 | 0.385 | -- | -- | -- | 0.107 | 3.05 | -- | -- | -- | -- |
| 59.28 | 0.359 | 11.2 | -1.07 | -- | -1.07 | -- | -- | 0.287 | -- | 20.37 | 183 | -- | -- |
| 82.98 | 0.424 | 11.2 | -- | 0.277 | -1.59 | -- | -- | 0.441 | 20.8 | 15.93 | 405 | -- | -- |
| 87.26 | 0.436 | 11.2 | -1.29 | -- | -- | -- | -- | 0.117 | -- | -- | -- | -- | -- |
| 124.03 | 0.521 | 11.2 | -- | 0.36 | -- | -- | -- | 0.253 | 3.04 | -- | -- | -- | -- |
| 85.69 | 0.431 | 11.2 | -- | -- | -1.7 | -- | -- | 0.449 | -- | 11.38 | 219 | -- | -- |
| 131.45 | 0.535 | 11.2 | -- | -- | -- | -- | -- | 0.261 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.44 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 2 | 51.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 4 | 52.05 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 16 | 52.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 64 | 54.18 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 17 |
| 81 | 54.45 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 21 |
| 125 | 54.98 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 152 | 55.25 | temperature | 20 | 270 | > th | dose dependent | sin | 1 | NA |
| 154 | 55.25 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 10 |
| 157 | 55.29 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 223 | 55.82 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 247 | 55.98 | temperature | 20 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 309 | 56.34 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 336 | 56.40 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 347 | 56.44 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 366 | 56.51 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 402 | 56.65 | temperature | 25 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 428 | 56.71 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 502 | 56.91 | temperature | 25 | 30 | > th | dose dependent | no | NA | NA |
| 515 | 56.93 | temperature | 25 | 30 | > th | dose dependent | rect. | 6 | 23 |
| 742 | 57.55 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 743 | 57.55 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 6 |
| 754 | 57.58 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 7 |
| 786 | 57.64 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 804 | 57.66 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 6 |
| 822 | 57.69 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 851 | 57.74 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 871 | 57.76 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 12 |
| 974 | 57.84 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 23 |