BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0184200 Os01g0184200|AK071240
(166 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0184200 Similar to 17.5 kDa class II heat shock protein 226 4e-60
Os02g0217900 Similar to Cytosolic class II small heat shock... 104 2e-23
Os02g0782500 Similar to Small heat stress protein class CIII 84 3e-17
Os03g0266300 Class I low-molecular-weight heat shock protei... 70 5e-13
Os03g0267200 Low molecular mass heat shock protein Oshsp17.7 70 9e-13
Os04g0445100 Similar to 22.7 kDa class IV heat shock protei... 70 9e-13
>Os01g0184200 Similar to 17.5 kDa class II heat shock protein
Length = 166
Score = 226 bits (577), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 115/143 (80%), Positives = 115/143 (80%)
Query: 1 MESAMFGLETPLMTALQHLLDIPDXXXXXXXXXXXXXXPTRAYVRDARAMAATPADVKDL 60
MESAMFGLETPLMTALQHLLDIPD PTRAYVRDARAMAATPADVKDL
Sbjct: 1 MESAMFGLETPLMTALQHLLDIPDGEGGAAGKQGATGGPTRAYVRDARAMAATPADVKDL 60
Query: 61 PGAYAFVVDMPGLKSSDIKVQVEEERLLVISXXXXXXXXXXXXXXSCKYLRMERRMGKFM 120
PGAYAFVVDMPGLKSSDIKVQVEEERLLVIS SCKYLRMERRMGKFM
Sbjct: 61 PGAYAFVVDMPGLKSSDIKVQVEEERLLVISGERRRGGGEEEKEESCKYLRMERRMGKFM 120
Query: 121 RKFVLPDNADVDKISAVCQDGVL 143
RKFVLPDNADVDKISAVCQDGVL
Sbjct: 121 RKFVLPDNADVDKISAVCQDGVL 143
>Os02g0217900 Similar to Cytosolic class II small heat shock protein 4 (Fragment)
Length = 175
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 71/108 (65%), Gaps = 3/108 (2%)
Query: 39 PTRAYVRDARAMAATPADVKDL--PGAYAFVVDMPGLKSSDIKVQVEEERLLVISXXXXX 96
PTRAYVRD RAMA TP DVK+L GA VDMPG+ +D++V+VE+ +L IS
Sbjct: 35 PTRAYVRDRRAMANTPMDVKELRASGALVLAVDMPGVAPADVRVEVEDGNVLAISGERRR 94
Query: 97 -XXXXXXXXXSCKYLRMERRMGKFMRKFVLPDNADVDKISAVCQDGVL 143
KYLRMERRMGKFMR+F LP++AD+D + A +DGVL
Sbjct: 95 PAGDGDDGGEGVKYLRMERRMGKFMRRFPLPESADLDGVRAEYKDGVL 142
>Os02g0782500 Similar to Small heat stress protein class CIII
Length = 172
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 58/98 (59%), Gaps = 5/98 (5%)
Query: 51 AATPADVKDLPGAYAFVVDMPGLKSSDIKVQVEEERLLVISXXXXXXX---XXXXXXXSC 107
P D+ + PG YAFV+D+PGL SDI+V +EE+R+LV+ C
Sbjct: 53 GGAPVDIMETPGEYAFVLDVPGLSKSDIQVTLEEDRVLVMKSSNGAGNGKRKREEEEGEC 112
Query: 108 KYLRMERRMG--KFMRKFVLPDNADVDKISAVCQDGVL 143
KY+R+ERR F RKF LP++AD ISA C++GVL
Sbjct: 113 KYIRLERRASPRAFARKFRLPEDADTGGISARCENGVL 150
>Os03g0266300 Class I low-molecular-weight heat shock protein 17.9
Length = 161
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 41 RAYVRDARAMAATPADVKDLPGAYAFVVDMPGLKSSDIKVQVEEERLLVISXXXXXXXXX 100
R + A A D K+ P A+ F D+PGLK ++KV+V++ +L IS
Sbjct: 42 RGASSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQIS----GERNK 97
Query: 101 XXXXXSCKYLRMERRMGKFMRKFVLPDNADVDKISAVCQDGVL 143
+ ++ R+ER GKF+R+F LPDNA ++I A ++GVL
Sbjct: 98 EQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVL 140
>Os03g0267200 Low molecular mass heat shock protein Oshsp17.7
Length = 159
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
Query: 46 DARAMAATPADVKDLPGAYAFVVDMPGLKSSDIKVQVEEERLLVISXXXXXXXXXXXXXX 105
DA A A D K+ P + F D+PGLK ++KV+V++ +L IS
Sbjct: 45 DAAAFAGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQIS----GERSREQEEK 100
Query: 106 SCKYLRMERRMGKFMRKFVLPDNADVDKISAVCQDGVL 143
S K+ R+ER GKF+R+F LP+N ++I A ++GVL
Sbjct: 101 SDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVL 138
>Os04g0445100 Similar to 22.7 kDa class IV heat shock protein precursor
Length = 215
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%)
Query: 56 DVKDLPGAYAFVVDMPGLKSSDIKVQVEEERLLVISXXXXXXXXXXXXXXSCKYLRMERR 115
D ++ A+ VVD+PG++ D++V+VE+ R+L IS + R ER
Sbjct: 79 DWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERS 138
Query: 116 MGKFMRKFVLPDNADVDKISAVCQDGVL 143
G+F R+ LPDNAD+D I+A +GVL
Sbjct: 139 YGRFWRQLRLPDNADLDSIAASLDNGVL 166
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.136 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,451,038
Number of extensions: 92328
Number of successful extensions: 227
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 11
Length of query: 166
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 73
Effective length of database: 12,179,899
Effective search space: 889132627
Effective search space used: 889132627
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 152 (63.2 bits)