BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0123900 Os01g0123900|AK104410
(193 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0123900 Similar to Bowman-Birk type proteinase inhibit... 313 4e-86
Os01g0124100 Proteinase inhibitor I12, Bowman-Birk family p... 164 4e-41
Os01g0124500 163 7e-41
Os01g0124400 Similar to Bowman Birk trypsin inhibitor 150 4e-37
Os01g0124000 Similar to Bowman Birk trypsin inhibitor 137 6e-33
Os01g0127600 Similar to Bowman-Birk type proteinase inhibit... 97 7e-21
>Os01g0123900 Similar to Bowman-Birk type proteinase inhibitor (EBI)
Length = 193
Score = 313 bits (803), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 160/193 (82%), Positives = 160/193 (82%)
Query: 1 MKMKRTMAATSIXXXXXXXXXXXHGSXXXXXXXXXXXXIRLPIDGAVAARRRTRPWKCCD 60
MKMKRTMAATSI HGS IRLPIDGAVAARRRTRPWKCCD
Sbjct: 1 MKMKRTMAATSILFFFLAGLAAAHGSTADDTTTTTTNTIRLPIDGAVAARRRTRPWKCCD 60
Query: 61 NIVRLPERINPPFWQCDDELEPGQCFRQCEACRDXXXXXXXXXXLICDDVFWGDDPGTSC 120
NIVRLPERINPPFWQCDDELEPGQCFRQCEACRD LICDDVFWGDDPGTSC
Sbjct: 61 NIVRLPERINPPFWQCDDELEPGQCFRQCEACRDPPGRPFPGRPLICDDVFWGDDPGTSC 120
Query: 121 APSSEWPWGPCCDIAVCTKSLPPICHCSDEVESCAAACGQCEMVDSWSWRPLFVCRDSFT 180
APSSEWPWGPCCDIAVCTKSLPPICHCSDEVESCAAACGQCEMVDSWSWRPLFVCRDSFT
Sbjct: 121 APSSEWPWGPCCDIAVCTKSLPPICHCSDEVESCAAACGQCEMVDSWSWRPLFVCRDSFT 180
Query: 181 GDPGPRCTPEMHN 193
GDPGPRCTPEMHN
Sbjct: 181 GDPGPRCTPEMHN 193
>Os01g0124100 Proteinase inhibitor I12, Bowman-Birk family protein
Length = 259
Score = 164 bits (415), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 84/142 (59%), Positives = 97/142 (68%), Gaps = 5/142 (3%)
Query: 52 RTRPWKCCDNIVRLPERINPPFWQCDDELEPGQCFRQCEACRDXXXXXXXXXXLICDDVF 111
+ RPWKCCDNI RLP RI+PPFW+CDDEL+PGQCF C+ACR+ LICDDV+
Sbjct: 123 KKRPWKCCDNIRRLPPRIHPPFWRCDDELKPGQCFAACKACREAPGPFPGP--LICDDVY 180
Query: 112 WGDDPGTSCAPSSEWPWGPCCDIAVCTKSLPPICHCSDEVESCAAACGQCEMVDSWSWRP 171
WG DPG C P PWG CCD CTKS+PPIC C D+V +C AC C+ V S S P
Sbjct: 181 WGADPGPFCTPR---PWGDCCDNTTCTKSIPPICSCGDKVAACDGACKDCQPVASSSEPP 237
Query: 172 LFVCRDSFTGDPGPRCTPEMHN 193
FVC+D FTG PGP+CTP N
Sbjct: 238 RFVCKDQFTGQPGPKCTPCTQN 259
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 81/171 (47%), Gaps = 28/171 (16%)
Query: 39 IRLPIDGAVAARRRTRPWKCCDNIVRLPERINPPFWQCDDELEPGQCFRQCEACRDXXXX 98
IRLP +G A + +PW CCD+I P +I PP ++C+DE++ QC C+ C
Sbjct: 29 IRLPSEGD-APPQPAKPWDCCDDIEMSPLKIFPPLYRCNDEVK--QCSAACKECVAAPAA 85
Query: 99 XXX----XXXLICDDVFWGDDPGTSCAPSSEW--------PWGPCCDIAVCTKSLPPICH 146
L+C D + +DPG C P EW PW CCD + LPP H
Sbjct: 86 GDSPCGGGAALVCRDWYSTEDPGKPCTPEREWPERTTKKRPWK-CCDN---IRRLPPRIH 141
Query: 147 -----CSDEVE--SCAAACGQCEMVDSWSWRPLFVCRDSFTG-DPGPRCTP 189
C DE++ C AAC C PL +C D + G DPGP CTP
Sbjct: 142 PPFWRCDDELKPGQCFAACKACREAPGPFPGPL-ICDDVYWGADPGPFCTP 191
>Os01g0124500
Length = 1131
Score = 163 bits (413), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 87/159 (54%), Positives = 105/159 (66%), Gaps = 11/159 (6%)
Query: 39 IRLPIDGAVAARRRT--RPWKCCDNIVRLPERINPPFWQCDDELEPGQCFRQCEACRDXX 96
IRLP DGA + + T RPWKCCD+I P I PPFW+C+DELEP QC QCE C+D
Sbjct: 32 IRLPSDGAKSPKMPTEKRPWKCCDDIEEQPASIFPPFWRCNDELEPSQCAAQCEVCQDQE 91
Query: 97 XXXXXXXXLICDDVFWGDDPGTSCAPSSEWPWGPCCDIAVCTKSLPPICHCSDEVESCAA 156
LIC DV+WG DPG C P PWG CCD+ +C++SLPPIC C+DEVESCAA
Sbjct: 92 ASPGR---LICGDVYWGADPGPFCTPR---PWGDCCDMDICSRSLPPICRCADEVESCAA 145
Query: 157 ACGQCEMVDSWSWR---PLFVCRDSFTGDPGPRCTPEMH 192
AC C+ ++S S P +VC D F G+PGP CTP+ H
Sbjct: 146 ACKDCQQLESSSSSSEPPRYVCHDWFRGEPGPSCTPDEH 184
>Os01g0124400 Similar to Bowman Birk trypsin inhibitor
Length = 251
Score = 150 bits (380), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 79/140 (56%), Positives = 93/140 (66%), Gaps = 6/140 (4%)
Query: 54 RPWKCCDNIVRLPERINPPFWQCDDELEPGQCFRQCEACRDXXXXXXXXXXLICDDVFWG 113
RPWKCCD+IV+LP+RI PPFW+CDDELEPG+C C++CR+ LIC+DV+WG
Sbjct: 118 RPWKCCDSIVQLPQRIFPPFWRCDDELEPGKCTAACKSCRE--APGPFPGPLICEDVYWG 175
Query: 114 DDPGTSCAPSSEWPWGPCCDIAVCTKSLPPICHCSDEVESCAAACGQCEMVDSWSWRPLF 173
DPG C P PWG CCD A C K PP C C DEV CAAAC C+ V+S S P +
Sbjct: 176 ADPGPLCTPR---PWGKCCDKAFCNKMNPPTCRCMDEVNKCAAACKDCQRVES-SEPPRY 231
Query: 174 VCRDSFTGDPGPRCTPEMHN 193
VC+D FTG PGP C P N
Sbjct: 232 VCKDRFTGQPGPMCKPRAEN 251
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 89/193 (46%), Gaps = 22/193 (11%)
Query: 6 TMAATSIXXXXXXXXXXXHGSXXXXXXXXXXXXIRLPIDGAVAARRRTRPWKCCDNIVRL 65
TMA ++I HG IRLP DGA A R +PW CCDNI
Sbjct: 5 TMAISTILLFLLAGLVAAHGDGDTM--------IRLPSDGAEAPPRPPKPWDCCDNIEMS 56
Query: 66 PERINPPFWQCDDELEPGQCFRQCEACRDXXXXXXXXXXLICDDVFWGDDPGTSCA---- 121
P I PP ++C+DE++ QC C+ C + +C D + DPG C
Sbjct: 57 PLEIFPPLYRCNDEVK--QCSAACKECVE-APGDFPRGAFVCRDWYSTVDPGHMCTAPDQ 113
Query: 122 PSSEWPWGPCCD--IAVCTKSLPPICHCSDEVE--SCAAACGQCEMVDSWSWRPLFVCRD 177
P+++ PW CCD + + + PP C DE+E C AAC C PL +C D
Sbjct: 114 PTTKRPWK-CCDSIVQLPQRIFPPFWRCDDELEPGKCTAACKSCREAPGPFPGPL-ICED 171
Query: 178 SFTG-DPGPRCTP 189
+ G DPGP CTP
Sbjct: 172 VYWGADPGPLCTP 184
>Os01g0124000 Similar to Bowman Birk trypsin inhibitor
Length = 186
Score = 137 bits (344), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 105/194 (54%), Gaps = 16/194 (8%)
Query: 1 MKMKRTMAATSIXXXXXXXXXXXHGSXXXXXXXXXXXXIRLPIDGAVA-----ARRRTRP 55
MK+K TM A S+ IRLP +GA + ++RP
Sbjct: 3 MKVKSTMMAASMLLFLLVL-----AGIVTATTTTTDSNIRLPSNGAAGETDGNKQAKSRP 57
Query: 56 WKCCDNIVRLPERINPPFWQCDDELEPGQCFRQCEACRDXX-XXXXXXXXLICDDVFWGD 114
W+CCDNI +I PP W+C+DE++ QC CE C +CDD +
Sbjct: 58 WECCDNIEMSVLKIYPPRWRCNDEVK--QCAAACENCLQLVPGAGGEDVVFVCDDWYPTT 115
Query: 115 DPGTSCAPSSEWPWGPCCDIAVCTKSLPPICHCSDEVESCAAACGQCEMVDSWSWRPLFV 174
+PG C P PWG CCD A CT+SLPPICHC+DEV SCAAAC +C+MV+S S P ++
Sbjct: 116 NPGPVCTPR---PWGDCCDKAFCTRSLPPICHCADEVASCAAACKECDMVNSSSEPPRYI 172
Query: 175 CRDSFTGDPGPRCT 188
CRD FTG+PGP C
Sbjct: 173 CRDHFTGEPGPMCA 186
>Os01g0127600 Similar to Bowman-Birk type proteinase inhibitor D-II precursor
(IV)
Length = 179
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 82/155 (52%), Gaps = 18/155 (11%)
Query: 39 IRLPIDGAVAARRRTRPWKCCDNIVRLPERINPPFWQCDDELEPGQCFRQCEACRDXXXX 98
IRLP DG + PW CCD + + P RI PP ++C DE++ C CE C+
Sbjct: 32 IRLPTDGG--DEWPSPPWDCCDKLKQSPLRIWPPKYKCLDEVD--HCAAACEDCK----- 82
Query: 99 XXXXXXLICDDVFWGDDPGTSCAPSS------EWPWGPCCDIAVCTKSLPPICHCSDEVE 152
+C D +WG +PG C PW CCD AVCT+S+PP C C D+V+
Sbjct: 83 RADGGGYVCRDWYWGVNPGPKCTGGGGEEAVRSRPWK-CCDDAVCTRSMPPTCSCQDKVK 141
Query: 153 SCAAACGQCEMVDSWSWRPLFVCRDSFTGDPGPRC 187
SC+ CG+C V+S P F C D + G PGP+C
Sbjct: 142 SCSGGCGKCVQVESQP--PRFRCLDRYHGFPGPKC 174
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.139 0.524
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,232,112
Number of extensions: 299396
Number of successful extensions: 847
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 824
Number of HSP's successfully gapped: 8
Length of query: 193
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 98
Effective length of database: 12,075,471
Effective search space: 1183396158
Effective search space used: 1183396158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 153 (63.5 bits)