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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0127600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Bowman-Birk type proteinase inhibitor D-II precursor (IV).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.61 (0.0999) R2 : 0.558
β1 : -4.96 (0.545) R2dD : 0.198 R2D : 0.0327
β2 : 0.618 (0.254) R2dC : 0.00636 R2C : -0.0124
β3 : -6.18 (0.434) R2dE : 0.231 R2E : 0.312
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 9.88 (1.89) R2dD*E : 0.0677 R2D*E : -0.0272
γ1 : 1.7 (0.221) R2dN8 : 0.087 R2N8 : 0.175
σ : 1.82
deviance : 1525.33
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_____
C
peak time of C : 17.3
E
wheather : radiation
threshold : 1.14
memory length : 4317
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.1
open length of G : 13

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1522.43 1.83 5.61 -4.97 0.634 -6.04 -1.54 9.52 1.71 18.1 1.002 4321 18.1 13
1588.42 1.86 5.57 -2.68 0.609 -7.29 -0.548 -- 1.94 17.5 0.869 4320 18.2 13
1525.33 1.82 5.61 -4.96 0.618 -6.18 -- 9.88 1.7 17.3 1.14 4317 18.1 13
1581.99 1.85 5.5 -3.15 0.728 -7.27 -- -- 1.97 17.1 0.8538 4317 18.2 13
1546.22 1.83 5.6 -5.09 -- -6.08 -- 10.4 1.68 -- 1.136 4322 18.1 13
2544.91 2.36 5.31 -2.17 0.596 -- -1.91 -- 2.84 18.2 -- -- -- --
2553.78 2.37 5.32 -2.15 0.589 -- -- -- 2.83 18 -- -- -- --
1569.4 1.85 5.43 -3.31 -- -6.72 -- -- 2.24 -- 0.1717 4329 18.3 12.9
1810.54 1.98 5.46 -- 0.736 -6.93 -- -- 2.14 16.9 0.8024 4319 18.1 12.8
2571.74 2.37 5.31 -2.17 -- -- -- -- 2.82 -- -- -- -- --
2675.41 2.42 5.26 -- 0.621 -- -- -- 3.07 17.8 -- -- -- --
1588.46 1.86 5.32 -- -- -5.74 -- -- 2.79 -- 0.1888 4318 18 11.1
2695.43 2.42 5.25 -- -- -- -- -- 3.06 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1485.60 atmosphere 1015 43200 < th dose independent rect. 15 1
2 1485.66 atmosphere 1015 43200 < th dose independent rect. 17 1
3 1487.10 atmosphere 1015 43200 < th dose independent rect. 15 3
4 1487.86 atmosphere 1015 43200 > th dose independent rect. 15 1
17 1488.49 radiation 1 43200 < th dose independent rect. 18 11
24 1495.22 radiation 1 43200 < th dose independent rect. 18 8
27 1495.44 radiation 1 43200 < th dose independent rect. 18 3
38 1505.17 atmosphere 1015 43200 > th dose dependent rect. 1 1
40 1509.30 radiation 10 43200 < th dose dependent rect. 1 4
41 1510.97 radiation 30 14400 < th dose independent rect. 4 3
42 1511.45 radiation 30 14400 < th dose independent rect. 2 5
47 1514.14 radiation 30 14400 < th dose independent rect. 21 10
48 1514.72 radiation 1 14400 > th dose independent rect. 18 1
58 1514.87 radiation 1 14400 < th dose dependent rect. 18 13
63 1517.55 radiation 30 14400 < th dose independent rect. 17 14
66 1517.66 radiation 10 43200 < th dose dependent rect. 22 7
71 1519.04 radiation 10 43200 < th dose dependent rect. 19 10
74 1519.22 radiation 30 14400 < th dose independent rect. 6 1
77 1519.70 radiation 1 14400 < th dose dependent rect. 18 8
93 1521.95 radiation 1 14400 < th dose dependent rect. 18 3
107 1524.81 radiation 1 14400 < th dose dependent rect. 7 7
116 1526.75 temperature 15 43200 > th dose independent rect. 13 1
117 1526.90 radiation 1 14400 < th dose dependent rect. 9 4
120 1527.33 temperature 15 43200 < th dose independent rect. 13 1
121 1527.38 atmosphere 1015 43200 < th dose independent rect. 11 3
122 1527.45 radiation 1 14400 < th dose dependent rect. 18 21
126 1528.02 atmosphere 1015 43200 > th dose independent rect. 11 3
129 1528.38 atmosphere 1015 43200 < th dose independent rect. 10 5
132 1528.53 atmosphere 1015 43200 > th dose independent rect. 10 5
142 1532.01 temperature 15 43200 > th dose independent rect. 10 5
145 1532.41 temperature 15 43200 < th dose independent rect. 10 1
148 1532.74 temperature 15 43200 > th dose independent rect. 10 1
158 1533.28 radiation 1 43200 > th dose independent rect. 7 3
159 1533.42 radiation 1 43200 < th dose independent rect. 7 3
170 1534.04 radiation 1 43200 > th dose independent rect. 6 8
173 1534.10 radiation 1 43200 < th dose independent rect. 6 8
175 1534.20 radiation 1 4320 < th dose dependent rect. 3 3
193 1535.29 radiation 1 43200 > th dose independent rect. 6 10
194 1535.34 radiation 1 43200 < th dose independent rect. 6 10
200 1535.83 wind 5 43200 < th dose independent rect. 12 5
202 1536.13 radiation 1 43200 < th dose dependent rect. 7 3
214 1536.76 atmosphere 1015 43200 > th dose dependent rect. 19 1
229 1537.31 radiation 1 43200 < th dose dependent rect. 9 1
244 1538.28 radiation 20 14400 > th dose dependent rect. 17 14
248 1538.68 radiation 1 43200 < th dose dependent rect. 6 12
256 1539.08 temperature 15 43200 < th dose independent rect. 10 4
272 1539.40 wind 5 43200 > th dose independent rect. 14 2
284 1540.02 radiation 20 14400 > th dose dependent rect. 6 1
307 1540.70 wind 5 43200 > th dose independent rect. 12 5
345 1541.62 radiation 10 43200 < th dose independent rect. 1 5
352 1541.81 radiation 10 43200 < th dose independent rect. 22 8
377 1542.91 radiation 1 14400 < th dose dependent sin 11 NA
401 1544.10 radiation 1 43200 < th dose dependent rect. 23 18
408 1544.18 radiation 1 43200 < th dose dependent rect. 3 14
433 1544.90 radiation 1 43200 < th dose dependent rect. 7 22
443 1545.28 radiation 1 43200 < th dose dependent sin 3 NA
446 1545.37 radiation 1 43200 < th dose dependent rect. 23 14
451 1545.43 radiation 1 43200 < th dose dependent rect. 3 10
492 1546.98 radiation 1 43200 > th dose independent rect. 10 1
510 1547.27 radiation 1 43200 < th dose independent rect. 10 1
545 1548.39 radiation 1 43200 < th dose dependent rect. 6 20
549 1548.50 radiation 1 43200 < th dose dependent rect. 6 15
580 1549.50 temperature 15 43200 < th dose independent rect. 5 10
615 1551.28 humidity 80 43200 > th dose dependent rect. 10 1
620 1551.34 humidity 90 43200 > th dose dependent rect. 8 1
636 1551.91 temperature 15 43200 < th dose independent rect. 6 1
654 1552.39 humidity 90 43200 < th dose independent rect. 9 1
655 1552.44 temperature 15 43200 < th dose independent rect. 5 13
666 1553.07 temperature 15 43200 < th dose independent rect. 5 6
683 1553.77 wind 7 43200 < th dose dependent rect. 11 5
699 1553.98 temperature 15 43200 > th dose independent rect. 17 1
729 1554.81 atmosphere 995 43200 > th dose dependent rect. 19 1
730 1554.82 temperature 15 43200 < th dose independent sin 0 NA
733 1554.89 radiation 1 43200 < th dose independent rect. 7 19
735 1554.91 radiation 1 43200 < th dose independent rect. 7 21
736 1554.92 radiation 1 43200 < th dose independent rect. 7 14
753 1555.25 radiation 40 43200 < th dose independent rect. 15 17
755 1555.29 temperature 15 43200 > th dose independent sin 23 NA
777 1555.85 temperature 15 43200 < th dose independent rect. 3 17
779 1555.93 atmosphere 1015 43200 < th dose dependent rect. 19 1
784 1556.00 radiation 1 43200 < th dose dependent rect. 15 20
833 1557.49 temperature 15 43200 < th dose independent rect. 5 18
862 1558.29 wind 3 43200 > th dose dependent rect. 13 3
874 1558.56 temperature 15 43200 < th dose independent rect. 3 20
878 1558.61 wind 3 43200 > th dose dependent rect. 12 5
879 1558.62 radiation 40 43200 < th dose independent rect. 15 1
882 1558.66 atmosphere 995 43200 > th dose dependent rect. 18 7
890 1558.83 radiation 40 43200 < th dose independent rect. 15 13
912 1559.21 radiation 40 43200 < th dose independent rect. 15 5
924 1559.38 atmosphere 1015 43200 > th dose dependent rect. 14 1
925 1559.39 radiation 40 43200 < th dose independent rect. 15 8
952 1559.71 radiation 1 43200 < th dose independent rect. 18 17
960 1559.78 atmosphere 995 43200 > th dose dependent rect. 21 4
968 1559.88 atmosphere 995 43200 > th dose dependent rect. 23 2
979 1560.03 atmosphere 1015 43200 > th dose dependent rect. 14 7
986 1560.12 humidity 80 43200 > th dose independent rect. 10 1
997 1560.23 atmosphere 995 43200 > th dose dependent rect. 21 1
1000 1560.24 temperature 15 43200 < th dose independent rect. 17 1