FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0124400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Bowman Birk trypsin inhibitor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.14 (0.0664) R2 : 0.581
β1 : 1.71 (0.277) R2dD : 0.0492 R2D : -0.172
β2 : 1.41 (0.164) R2dC : 0.0694 R2C : 0.00288
β3 : 6.97 (0.299) R2dE : 0.731 R2E : 0.34
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.49 (0.151) R2dN8 : 0.142 R2N8 : -0.0672
σ : 1.22
deviance : 681.48
__
_____
C
peak time of C : 3.37
E
wheather : temperature
threshold : 57.49
memory length : 5310
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
670.31 1.22 6.26 0.932 1.44 7.38 0.254 4.22 1.41 3.4 30.31 5381 -- --
681.45 1.22 6.14 1.7 1.41 6.96 0.0898 -- 1.48 3.37 46.3 5300 -- --
670.26 1.21 6.26 0.923 1.45 7.42 -- 4.37 1.44 3.47 29.83 5401 -- --
681.48 1.22 6.14 1.71 1.41 6.97 -- -- 1.49 3.37 57.49 5310 -- --
754.13 1.28 6.28 0.96 -- 6.9 -- 3.15 1.26 -- 48.44 4784 -- --
1487.68 1.81 6.45 -1.57 1.15 -- -0.359 -- 0.0878 4.32 -- -- -- --
1488.02 1.81 6.45 -1.57 1.14 -- -- -- 0.0897 4.25 -- -- -- --
762.41 1.29 6.16 1.63 -- 6.73 -- -- 1.45 -- 120.9 4792 -- --
734.28 1.26 6.22 -- 1.21 5.95 -- -- 1.14 3.73 451.3 4744 -- --
1558.36 1.84 6.46 -1.52 -- -- -- -- 0.12 -- -- -- -- --
1552.68 1.84 6.41 -- 1.11 -- -- -- 0.264 4.28 -- -- -- --
815.03 1.33 6.23 -- -- 5.86 -- -- 1.14 -- 393.2 4772 -- --
1619.36 1.88 6.42 -- -- -- -- -- 0.289 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 647.04 radiation 1 43200 < th dose independent rect. 18 7
2 647.14 radiation 1 43200 < th dose independent rect. 18 5
5 647.25 radiation 1 43200 < th dose independent rect. 18 3
11 647.99 radiation 1 43200 > th dose independent rect. 18 1
23 655.25 radiation 1 43200 < th dose dependent rect. 18 11
24 656.41 radiation 1 43200 < th dose dependent rect. 18 1
25 656.44 radiation 1 43200 < th dose dependent rect. 18 5
48 674.40 temperature 10 4320 > th dose dependent rect. 2 7
49 674.40 temperature 30 4320 < th dose dependent rect. 2 7
51 674.79 temperature 10 4320 > th dose dependent rect. 22 12
52 674.83 temperature 10 4320 > th dose dependent sin 8 NA
53 674.86 temperature 30 4320 < th dose dependent rect. 22 12
56 675.00 temperature 30 4320 < th dose dependent sin 7 NA
61 675.10 temperature 10 4320 > th dose dependent rect. 1 9
64 675.24 temperature 30 4320 < th dose dependent rect. 1 9
85 675.54 radiation 1 43200 < th dose dependent rect. 3 2
95 675.78 temperature 20 14400 < th dose dependent rect. 3 3
272 679.99 temperature 10 4320 > th dose dependent rect. 5 3
304 680.66 temperature 10 4320 > th dose dependent rect. 6 1
320 680.97 temperature 30 4320 < th dose dependent rect. 14 19
366 681.53 humidity 90 43200 > th dose independent rect. 22 1
429 682.39 temperature 30 4320 < th dose dependent rect. 6 1
474 683.04 humidity 90 43200 < th dose independent rect. 18 1
641 685.18 temperature 30 4320 < th dose dependent no NA NA
658 685.37 radiation 1 43200 < th dose dependent rect. 22 7
693 685.93 radiation 40 43200 < th dose dependent rect. 18 11
714 686.20 temperature 10 4320 > th dose dependent no NA NA
731 686.56 radiation 1 43200 < th dose dependent sin 14 NA
785 687.26 temperature 30 4320 < th dose dependent rect. 4 23
823 687.88 radiation 40 43200 < th dose dependent rect. 18 7
869 688.57 temperature 10 4320 > th dose dependent rect. 4 23
925 689.67 radiation 40 43200 < th dose dependent rect. 18 5
937 689.84 radiation 1 14400 > th dose independent rect. 18 16
984 690.60 radiation 1 14400 > th dose independent rect. 18 19