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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0124000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Bowman Birk trypsin inhibitor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.16 (0.124) R2 : 0.517
β1 : -6.57 (0.449) R2dD : 0.249 R2D : 0.215
β2 : 1.83 (0.289) R2dC : 0.0408 R2C : 0.037
β3 : -2.11 (0.361) R2dE : 0.0415 R2E : 0.0389
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 16.5 (1.41) R2dD*E : 0.153 R2D*E : 0.143
γ1 : 1.16 (0.276) R2dN8 : 0.0286 R2N8 : 0.0866
σ : 2.23
deviance : 2286.14
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_____
C
peak time of C : 21.9
E
wheather : radiation
threshold : 11.52
memory length : 4244
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.05
open length of G : 0.917

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
2270 2.24 7.16 -6.57 1.78 -2.12 -2.13 16.7 1.18 22 11.04 4244 7.06 0.917
2590.7 2.37 6.83 -6.87 1.78 -4.29 -1.64 -- 1.93 20.9 31.28 4917 7.03 1.06
2286.14 2.23 7.16 -6.57 1.83 -2.11 -- 16.5 1.16 21.9 11.52 4244 7.05 0.917
2485 2.32 6.91 -9.13 1.47 -6.95 -- -- 1.4 19.6 31.61 4825 7.03 1.06
2378.48 2.27 7.19 -6.43 -- -2.44 -- 17 1.46 -- 11.89 4853 7.1 0.784
3099.41 2.61 6.76 -5.48 1.75 -- -2.01 -- 2.27 22.2 -- -- -- --
3115.57 2.61 6.76 -5.4 1.76 -- -- -- 2.28 22.1 -- -- -- --
2571.04 2.36 7.04 -9.25 -- -7.4 -- -- 1.09 -- 31.81 4915 7.05 1.04
3877.45 2.9 6.84 -- 1.62 -6.32 -- -- 2.24 21 33.3 680 7.47 1.77
3303.95 2.69 6.71 -5.37 -- -- -- -- 2.28 -- -- -- -- --
3883.25 2.92 6.62 -- 1.74 -- -- -- 2.88 21.9 -- -- -- --
3929.76 2.92 6.61 -- -- -2.46 -- -- 2.6 -- 12.18 572 8.1 1.37
4065.38 2.98 6.57 -- -- -- -- -- 2.88 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 2175.11 humidity 90 14400 < th dose independent rect. 23 1
2 2177.06 atmosphere 1015 43200 < th dose independent rect. 12 1
7 2177.80 atmosphere 1015 43200 > th dose independent rect. 12 1
35 2183.85 atmosphere 1015 43200 > th dose independent rect. 15 5
41 2184.90 atmosphere 1015 43200 < th dose independent rect. 18 1
79 2192.90 humidity 90 14400 > th dose independent rect. 22 4
81 2193.71 atmosphere 1015 43200 > th dose dependent rect. 19 1
106 2201.98 atmosphere 1015 43200 > th dose dependent rect. 14 1
107 2202.04 atmosphere 1015 43200 > th dose dependent rect. 14 7
145 2206.44 radiation 20 43200 < th dose independent rect. 1 6
152 2207.28 radiation 30 43200 < th dose independent rect. 16 16
154 2207.41 radiation 20 43200 < th dose independent rect. 18 13
157 2207.52 radiation 20 43200 < th dose independent rect. 5 2
162 2207.93 radiation 20 43200 < th dose independent rect. 22 9
187 2210.73 wind 1 43200 < th dose independent rect. 2 1
198 2212.71 radiation 30 43200 > th dose dependent rect. 7 1
224 2213.67 atmosphere 1015 43200 > th dose independent sin 20 NA
233 2214.23 atmosphere 1015 43200 < th dose independent sin 20 NA
235 2214.35 atmosphere 1015 43200 > th dose dependent rect. 19 7
241 2214.65 radiation 10 43200 > th dose dependent rect. 5 1
330 2218.82 atmosphere 1015 43200 > th dose dependent rect. 23 1
365 2220.52 radiation 10 43200 > th dose independent rect. 17 1
379 2220.64 atmosphere 1015 43200 > th dose dependent sin 17 NA
480 2226.01 wind 1 43200 < th dose dependent rect. 2 1
486 2226.35 temperature 15 43200 > th dose independent rect. 13 1
497 2226.64 humidity 90 14400 < th dose independent rect. 20 6
499 2226.67 temperature 15 43200 < th dose independent rect. 13 1
502 2226.84 humidity 80 14400 > th dose dependent rect. 22 4
516 2227.32 wind 7 43200 > th dose independent rect. 24 1
518 2227.53 radiation 1 14400 < th dose dependent rect. 10 3
521 2227.79 wind 7 43200 < th dose independent rect. 24 1
545 2228.98 humidity 60 43200 > th dose independent rect. 8 4
553 2229.14 humidity 60 43200 < th dose independent rect. 16 20
591 2230.98 wind 1 43200 > th dose independent rect. 2 1
601 2231.36 radiation 1 14400 < th dose dependent rect. 7 8
620 2232.08 humidity 90 14400 > th dose independent sin 12 NA
635 2232.64 humidity 90 14400 > th dose independent rect. 17 11
643 2232.75 wind 7 43200 > th dose dependent rect. 24 1
649 2232.94 humidity 90 14400 > th dose independent rect. 16 14
660 2233.39 radiation 1 14400 < th dose independent rect. 10 3
672 2233.69 radiation 1 14400 > th dose independent rect. 10 3
685 2234.04 humidity 60 43200 > th dose independent rect. 16 20
700 2234.54 radiation 1 43200 > th dose independent rect. 10 1
794 2237.40 radiation 1 43200 < th dose dependent rect. 8 1
796 2237.48 radiation 1 43200 > th dose independent rect. 8 1
800 2237.59 radiation 1 43200 < th dose dependent rect. 8 3
801 2237.62 radiation 1 43200 < th dose independent rect. 8 1
838 2238.46 temperature 15 43200 < th dose independent rect. 3 1
859 2238.82 temperature 15 43200 > th dose independent rect. 17 1
863 2238.90 radiation 1 14400 < th dose dependent rect. 23 17
870 2239.02 radiation 1 14400 < th dose dependent rect. 19 21
873 2239.05 temperature 15 43200 > th dose independent rect. 13 5
880 2239.12 radiation 1 14400 < th dose dependent rect. 3 13
901 2239.45 radiation 20 14400 < th dose independent rect. 17 3
907 2239.55 radiation 1 14400 < th dose dependent rect. 7 22
912 2239.76 radiation 1 43200 < th dose independent rect. 8 3
916 2239.87 radiation 1 43200 > th dose independent rect. 8 3
918 2239.91 temperature 15 43200 > th dose independent rect. 2 1
970 2241.04 temperature 15 43200 < th dose independent rect. 6 1
971 2241.05 atmosphere 1015 43200 < th dose independent no NA NA
972 2241.05 temperature 15 43200 < th dose independent rect. 17 1
973 2241.05 wind 7 43200 > th dose independent rect. 24 3
977 2241.08 radiation 1 14400 < th dose dependent rect. 9 5