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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0124100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Proteinase inhibitor I12, Bowman-Birk family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.35 (0.0724) R2 : 0.633
β1 : 1.96 (0.273) R2dD : 0.0448 R2D : -0.0704
β2 : 3.68 (0.181) R2dC : 0.35 R2C : 0.153
β3 : -4.63 (0.218) R2dE : 0.413 R2E : 0.111
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.78 (0.155) R2dN8 : 0.141 R2N8 : 0.0625
σ : 1.35
deviance : 842.79
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_____
C
peak time of C : 2.15
E
wheather : temperature
threshold : 25.41
memory length : 1265
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 11.4
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
829.19 1.35 5.2 3.19 3.58 -5.02 -1.49 4.95 2.09 2.13 25.4 1291 12.4 --
843.1 1.35 5.31 2.07 3.57 -4.46 -0.816 -- 1.9 2.03 25.12 1311 13.6 --
836.16 1.35 5.19 3.23 3.69 -5.14 -- 5.23 2.05 2.15 25.5 1259 11.5 --
842.79 1.35 5.35 1.96 3.68 -4.63 -- -- 1.78 2.15 25.41 1265 11.4 --
1363.47 1.72 5.19 3.14 -- -5.51 -- 3.71 2.34 -- 24.37 1773 19.6 --
1653.1 1.91 5.45 0.415 2.76 -- -2.32 -- 1.38 2.05 -- -- -- --
1673.39 1.92 5.44 0.484 2.75 -- -- -- 1.39 1.99 -- -- -- --
1337.47 1.7 5.2 2.44 -- -5.67 -- -- 2.42 -- 22.34 1786 20.1 --
931.16 1.42 5.39 -- 3.78 -4.45 -- -- 1.49 2.29 25.48 1215 9.57 --
2129.91 2.16 5.41 0.598 -- -- -- -- 1.46 -- -- -- -- --
1679.57 1.92 5.45 -- 2.76 -- -- -- 1.34 2 -- -- -- --
1472.95 1.79 5.29 -- -- -4.85 -- -- 1.99 -- 22.84 1762 19.6 --
2139.35 2.16 5.43 -- -- -- -- -- 1.39 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 855.12 temperature 25 1440 > th dose dependent rect. 11 9
11 857.79 temperature 25 1440 > th dose dependent rect. 11 5
14 858.05 temperature 25 1440 > th dose dependent rect. 13 6
19 858.75 temperature 25 1440 > th dose dependent sin 20 NA
30 860.36 temperature 25 1440 > th dose dependent rect. 13 2
60 863.13 temperature 25 1440 > th dose dependent rect. 11 21
202 869.84 temperature 25 1440 > th dose dependent no NA NA
217 870.95 temperature 25 1440 > th dose dependent rect. 17 23
275 879.36 temperature 25 14400 > th dose independent rect. 19 1
300 887.50 temperature 25 14400 > th dose dependent rect. 17 3
308 888.94 temperature 25 14400 < th dose independent rect. 19 1
374 900.23 temperature 25 14400 > th dose dependent rect. 16 13
403 903.79 temperature 25 14400 > th dose dependent sin 15 NA
428 906.45 temperature 30 14400 < th dose independent rect. 14 5
429 906.45 temperature 30 14400 < th dose independent rect. 14 10
432 906.46 temperature 30 14400 < th dose independent rect. 14 17
433 906.47 temperature 30 14400 < th dose independent rect. 14 13
435 906.49 temperature 30 14400 < th dose independent rect. 11 6
437 906.50 temperature 30 14400 < th dose independent rect. 14 15
445 906.79 temperature 30 14400 < th dose independent rect. 11 13
446 906.80 temperature 30 14400 < th dose independent rect. 11 8
449 906.80 temperature 30 14400 < th dose independent rect. 11 20
450 906.81 temperature 30 14400 < th dose independent rect. 11 16
454 906.83 temperature 30 14400 < th dose independent rect. 11 18
466 907.51 temperature 30 14400 < th dose independent sin 15 NA
475 907.78 temperature 30 14400 > th dose independent rect. 14 5
519 908.17 temperature 30 14400 > th dose independent rect. 11 5
531 908.74 temperature 30 14400 > th dose independent rect. 11 8
581 909.13 temperature 30 14400 > th dose independent sin 15 NA
614 910.47 temperature 25 14400 > th dose dependent rect. 15 21
668 911.41 temperature 20 14400 > th dose dependent rect. 21 2
785 913.93 temperature 25 14400 > th dose dependent rect. 3 20
855 914.98 temperature 25 14400 > th dose dependent no NA NA
902 916.33 temperature 25 14400 > th dose independent rect. 18 17
909 916.60 temperature 25 14400 < th dose independent rect. 18 17
945 917.87 temperature 25 4320 < th dose independent rect. 7 3