BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0104400 Os01g0104400|AK071375
(268 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0104400 Ricin B-related lectin domain containing protein 420 e-118
Os07g0683900 Ricin B-related lectin domain containing protein 242 2e-64
Os03g0327600 Ricin B-related lectin domain containing protein 240 7e-64
Os07g0684000 Ricin B-related lectin domain containing protein 240 8e-64
Os07g0683600 Ricin B-related lectin domain containing protein 224 7e-59
Os03g0325900 132 2e-31
Os03g0325700 Ricin B-related lectin domain containing protein 127 8e-30
>Os01g0104400 Ricin B-related lectin domain containing protein
Length = 268
Score = 420 bits (1080), Expect = e-118, Method: Compositional matrix adjust.
Identities = 212/268 (79%), Positives = 212/268 (79%)
Query: 1 MEFPXXXXXXXXXXXXXXXXXXXXPAPAPAYGHDSXXXXXXXXXXXXXXXXXXXXXXSHD 60
MEFP PAPAPAYGHDS SHD
Sbjct: 1 MEFPHRHHHHGHRGDDDDDDRRRHPAPAPAYGHDSAPPPGPYGQAPPPADPYARHPPSHD 60
Query: 61 XXXXXXXXXXXXXXNVVHVSHEVSDHQRPTPHYGGSEYISPVQETRPYHGGGGAPPVTHR 120
NVVHVSHEVSDHQRPTPHYGGSEYISPVQETRPYHGGGGAPPVTHR
Sbjct: 61 YAHPPPAYGGGGYGNVVHVSHEVSDHQRPTPHYGGSEYISPVQETRPYHGGGGAPPVTHR 120
Query: 121 IYCKAGEDNYSLAVRDGKVCLVRSDRDDHTQHWVKDMKYSTRVKDEEGYPAMALVNKATG 180
IYCKAGEDNYSLAVRDGKVCLVRSDRDDHTQHWVKDMKYSTRVKDEEGYPAMALVNKATG
Sbjct: 121 IYCKAGEDNYSLAVRDGKVCLVRSDRDDHTQHWVKDMKYSTRVKDEEGYPAMALVNKATG 180
Query: 181 DALKHSIGQSHPVRLVRYNPEYMDESVLWTESRDVGSGFRCIRMVNNIYLNFDALHGDKD 240
DALKHSIGQSHPVRLVRYNPEYMDESVLWTESRDVGSGFRCIRMVNNIYLNFDALHGDKD
Sbjct: 181 DALKHSIGQSHPVRLVRYNPEYMDESVLWTESRDVGSGFRCIRMVNNIYLNFDALHGDKD 240
Query: 241 HGGVRDGTTLVLWEWCEGDNQRWKIVPW 268
HGGVRDGTTLVLWEWCEGDNQRWKIVPW
Sbjct: 241 HGGVRDGTTLVLWEWCEGDNQRWKIVPW 268
>Os07g0683900 Ricin B-related lectin domain containing protein
Length = 343
Score = 242 bits (617), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 110/157 (70%), Positives = 128/157 (81%), Gaps = 1/157 (0%)
Query: 112 GGAPPVTHRIYCKAGEDNYSLAVRDGKVCLVRSDRDDHTQHWVKDMKYSTRVKDEEGYPA 171
GG P T R++ AGED Y L VR+G CL + D QHW+KDM++S +++DEEGYPA
Sbjct: 188 GGVPVHTVRVFSAAGED-YCLTVRNGTACLAPKNPRDDYQHWIKDMRHSNKIRDEEGYPA 246
Query: 172 MALVNKATGDALKHSIGQSHPVRLVRYNPEYMDESVLWTESRDVGSGFRCIRMVNNIYLN 231
ALVNK TG+A+KHS GQ HPV+LV YNPEY DESVLWTES+DVG GFRCIRMVNNIYLN
Sbjct: 247 FALVNKVTGEAIKHSTGQGHPVKLVPYNPEYQDESVLWTESKDVGKGFRCIRMVNNIYLN 306
Query: 232 FDALHGDKDHGGVRDGTTLVLWEWCEGDNQRWKIVPW 268
FDA HGDKDHGG+ DGT +VLW+WCEGDNQRWKI+PW
Sbjct: 307 FDAFHGDKDHGGIHDGTEIVLWKWCEGDNQRWKILPW 343
Score = 228 bits (581), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 107/154 (69%), Positives = 122/154 (79%), Gaps = 1/154 (0%)
Query: 115 PPVTHRIYCKAGEDNYSLAVRDGKVCLVRSDRDDHTQHWVKDMKYSTRVKDEEGYPAMAL 174
P +I+C+A E NY L VRD V L + D QHW KDM++ST+VKD EG PA AL
Sbjct: 18 PNQIFKIFCRANE-NYCLTVRDSAVVLAPVNPKDEHQHWFKDMRFSTKVKDGEGMPAFAL 76
Query: 175 VNKATGDALKHSIGQSHPVRLVRYNPEYMDESVLWTESRDVGSGFRCIRMVNNIYLNFDA 234
VNKATG A+KHS+GQSHPV+LV +NPEY D SVLWTES+DVG GFRCIRMVNN LN DA
Sbjct: 77 VNKATGLAVKHSLGQSHPVKLVPFNPEYEDASVLWTESKDVGKGFRCIRMVNNTRLNLDA 136
Query: 235 LHGDKDHGGVRDGTTLVLWEWCEGDNQRWKIVPW 268
HGDKDHGGVRDGTT+VLWEWC+GDNQ WKI+PW
Sbjct: 137 FHGDKDHGGVRDGTTVVLWEWCKGDNQSWKILPW 170
>Os03g0327600 Ricin B-related lectin domain containing protein
Length = 348
Score = 240 bits (613), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 114/158 (72%), Positives = 130/158 (82%), Gaps = 3/158 (1%)
Query: 111 GGGAPPVTHRIYCKAGEDNYSLAVRDGKVCLVRSDRDDHTQHWVKDMKYSTRVKDEEGYP 170
GG P V RI+CKA E +S+ VR G VCL ++ D QHW+KDM++S +KDEEGYP
Sbjct: 194 GGNEPTV--RIFCKADE-GFSVTVRGGSVCLAPTNPRDEYQHWIKDMRHSNSIKDEEGYP 250
Query: 171 AMALVNKATGDALKHSIGQSHPVRLVRYNPEYMDESVLWTESRDVGSGFRCIRMVNNIYL 230
A ALVN+ TG+A+KHS G+ HPV+LV YNP Y DESVLWTESRDVG GFRCIRMVNNIYL
Sbjct: 251 AFALVNRVTGEAIKHSQGEGHPVKLVPYNPGYQDESVLWTESRDVGHGFRCIRMVNNIYL 310
Query: 231 NFDALHGDKDHGGVRDGTTLVLWEWCEGDNQRWKIVPW 268
NFDALHGDKDHGGVRDGTT+ LW+WCEGDNQRWKIVPW
Sbjct: 311 NFDALHGDKDHGGVRDGTTVALWKWCEGDNQRWKIVPW 348
Score = 218 bits (554), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 102/151 (67%), Positives = 121/151 (80%), Gaps = 1/151 (0%)
Query: 118 THRIYCKAGEDNYSLAVRDGKVCLVRSDRDDHTQHWVKDMKYSTRVKDEEGYPAMALVNK 177
T +I+C+A E Y +AVR+G V L ++ D QHW KDM++S ++KDEEG PA ALVNK
Sbjct: 30 TFKIFCRADE-GYCVAVREGNVVLAPTNPRDEHQHWYKDMRFSAKIKDEEGNPAFALVNK 88
Query: 178 ATGDALKHSIGQSHPVRLVRYNPEYMDESVLWTESRDVGSGFRCIRMVNNIYLNFDALHG 237
ATG A+KHS+GQ HPV+L +NPEY DESVLWTES DVG FRCIRM+NNI LNFDA HG
Sbjct: 89 ATGLAIKHSLGQGHPVKLAPFNPEYPDESVLWTESGDVGKSFRCIRMLNNIRLNFDAFHG 148
Query: 238 DKDHGGVRDGTTLVLWEWCEGDNQRWKIVPW 268
DKDHGGV DGTT+VLWEW +GDNQ WKI+PW
Sbjct: 149 DKDHGGVHDGTTIVLWEWAKGDNQCWKILPW 179
>Os07g0684000 Ricin B-related lectin domain containing protein
Length = 204
Score = 240 bits (612), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 111/154 (72%), Positives = 129/154 (83%), Gaps = 1/154 (0%)
Query: 115 PPVTHRIYCKAGEDNYSLAVRDGKVCLVRSDRDDHTQHWVKDMKYSTRVKDEEGYPAMAL 174
P T ++YC+A NY++ R+G V L ++ D QHW+KDM++ST +KDEEGYPA AL
Sbjct: 51 PQPTVKVYCRA-NPNYAMTARNGAVVLAPANPKDEYQHWIKDMRWSTSIKDEEGYPAFAL 109
Query: 175 VNKATGDALKHSIGQSHPVRLVRYNPEYMDESVLWTESRDVGSGFRCIRMVNNIYLNFDA 234
VNKATG A+KHS+GQSHPVRLV YNPE MDESVLWTESRDVG+GFRCIRMVNNIYLNFDA
Sbjct: 110 VNKATGQAIKHSLGQSHPVRLVPYNPEVMDESVLWTESRDVGNGFRCIRMVNNIYLNFDA 169
Query: 235 LHGDKDHGGVRDGTTLVLWEWCEGDNQRWKIVPW 268
HGDK HGGVRDGT +VLW+WCEGDNQRWKI P+
Sbjct: 170 FHGDKYHGGVRDGTDIVLWKWCEGDNQRWKIQPY 203
>Os07g0683600 Ricin B-related lectin domain containing protein
Length = 124
Score = 224 bits (570), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 100/118 (84%), Positives = 112/118 (94%)
Query: 151 QHWVKDMKYSTRVKDEEGYPAMALVNKATGDALKHSIGQSHPVRLVRYNPEYMDESVLWT 210
QHWVKDM++ST +KDEEGYPA ALVNKATG+A+KHS+GQSHPVRLV YNPEY+DESVLWT
Sbjct: 7 QHWVKDMRHSTSIKDEEGYPAFALVNKATGEAIKHSLGQSHPVRLVPYNPEYLDESVLWT 66
Query: 211 ESRDVGSGFRCIRMVNNIYLNFDALHGDKDHGGVRDGTTLVLWEWCEGDNQRWKIVPW 268
ES+DVG GFRC+RMVNNIYLNFDA HGDKDHGGV DGTT+VLWEWC+GDNQRWKI+PW
Sbjct: 67 ESKDVGHGFRCVRMVNNIYLNFDAFHGDKDHGGVHDGTTVVLWEWCKGDNQRWKILPW 124
>Os03g0325900
Length = 341
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/117 (56%), Positives = 80/117 (68%)
Query: 151 QHWVKDMKYSTRVKDEEGYPAMALVNKATGDALKHSIGQSHPVRLVRYNPEYMDESVLWT 210
Q W KD++YS +KDE G A ALVNKATG+A+KHS G +HPVRLV++ P Y+DESVLWT
Sbjct: 76 QVWHKDVRYSAGLKDEAGRLAFALVNKATGEAIKHSFGYNHPVRLVKFEPGYLDESVLWT 135
Query: 211 ESRDVGSGFRCIRMVNNIYLNFDALHGDKDHGGVRDGTTLVLWEWCEGDNQRWKIVP 267
ES D G GF I M+NN FDA G RDGT L+L+ W GDNQ W++ P
Sbjct: 136 ESEDTGDGFHRIHMINNADYIFDAEEAVPLCDGARDGTRLILFRWNGGDNQLWRMAP 192
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 81/136 (59%), Gaps = 5/136 (3%)
Query: 132 LAVRDGKVCLVRSDRDDHTQHWVKDMKYSTRVKDEEGYPAMALVNKATGDALKHSIGQSH 191
L VR G V L R D D QHW + + RV DEEG+ + L+N +TG A+K S +
Sbjct: 209 LTVRHGAVVLARIDHKDPKQHWTVSFRNTGRVTDEEGHRSFLLLNPSTGKAMKRSADKEQ 268
Query: 192 PVRLVRYNPEYMDESVLWTESRDVGSGFRCIRMVNNIYLNFDALHGDKDHGGVRDGTTLV 251
PV LV + P+ +D ++LWT S +VG GF CIR V+++ L DA GG DGT ++
Sbjct: 269 PVELVGHGPDSVDVALLWTRSDNVGEGFHCIRTVSDVSLVLDAA-----GGGRHDGTPII 323
Query: 252 LWEWCEGDNQRWKIVP 267
++ W G NQRW ++P
Sbjct: 324 VFPWNGGANQRWSMLP 339
>Os03g0325700 Ricin B-related lectin domain containing protein
Length = 256
Score = 127 bits (319), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 67/133 (50%), Positives = 82/133 (61%), Gaps = 18/133 (13%)
Query: 153 WVKDMKYSTRVKDEEGYPAMALVNKATGDALKHSIGQ------------------SHPVR 194
W KD KYS +KDE G PA ALVNKATGDALKHS+G +H VR
Sbjct: 80 WHKDAKYSAGIKDEAGRPAFALVNKATGDALKHSLGYCCPLKSRFKHEDDVCISPNHLVR 139
Query: 195 LVRYNPEYMDESVLWTESRDVGSGFRCIRMVNNIYLNFDALHGDKDHGGVRDGTTLVLWE 254
++++ P Y+DESVLWT S DV G+R I M+NN FDA +GG RDGT L+L+
Sbjct: 140 VIKFEPGYLDESVLWTASVDVADGYRRIHMMNNADYIFDAEEDTPQYGGARDGTRLILFR 199
Query: 255 WCEGDNQRWKIVP 267
W EG NQ W++VP
Sbjct: 200 WNEGLNQIWRMVP 212
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.136 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,495,426
Number of extensions: 428247
Number of successful extensions: 837
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 832
Number of HSP's successfully gapped: 10
Length of query: 268
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 169
Effective length of database: 11,866,615
Effective search space: 2005457935
Effective search space used: 2005457935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)