BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0637400 Os12g0637400|AK072546
(135 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0637400 Similar to Purple acid phosphatase (EC 3.1.3.2... 195 9e-51
Os12g0637100 Similar to Purple acid phosphatase (EC 3.1.3.2) 105 7e-24
Os01g0776600 Similar to Purple acid phosphatase (EC 3.1.3.2) 100 3e-22
Os06g0643900 Similar to Acid phosphatase precursor 81 2e-16
>Os12g0637400 Similar to Purple acid phosphatase (EC 3.1.3.2) (Fragment)
Length = 135
Score = 195 bits (495), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 99/135 (73%), Positives = 99/135 (73%)
Query: 1 MAMGARLCXXXXXXXXXXXXXATAAEAMRCPGTTSVYRRPKKKAADMVDMPLDADVFAEP 60
MAMGARLC ATAAEAMRCPGTTSVYRRPKKKAADMVDMPLDADVFAEP
Sbjct: 1 MAMGARLCSSSIIVVVVVLIVATAAEAMRCPGTTSVYRRPKKKAADMVDMPLDADVFAEP 60
Query: 61 AGRNAPQQVHITLGDQTGTAMTVSWVTMEEAGNSTVLYGXXXXXXXXXXXXXXXXXXXXX 120
AGRNAPQQVHITLGDQTGTAMTVSWVTMEEAGNSTVLYG
Sbjct: 61 AGRNAPQQVHITLGDQTGTAMTVSWVTMEEAGNSTVLYGLAMDKLDMAADATVTTYTYYN 120
Query: 121 XXSGFIHHCTPLLGK 135
SGFIHHCTPLLGK
Sbjct: 121 YTSGFIHHCTPLLGK 135
>Os12g0637100 Similar to Purple acid phosphatase (EC 3.1.3.2)
Length = 463
Score = 105 bits (263), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 57/99 (57%), Positives = 59/99 (59%), Gaps = 3/99 (3%)
Query: 32 GTTSVYRRPKKKAADMVDMPLDADVFAEPAGRNAPQQVHITLGDQTGTAMTVSWVTMEEA 91
G TS YRR K VDMPLDADVF P G NAPQQVHITLGDQTGTAMTVSWVT E
Sbjct: 28 GVTSEYRR---KLEATVDMPLDADVFRVPPGYNAPQQVHITLGDQTGTAMTVSWVTANEL 84
Query: 92 GNSTVLYGXXXXXXXXXXXXXXXXXXXXXXXSGFIHHCT 130
G++TV YG SGFIHHCT
Sbjct: 85 GSNTVRYGSSPEKLDRAAEGSHTRYDYFNYTSGFIHHCT 123
>Os01g0776600 Similar to Purple acid phosphatase (EC 3.1.3.2)
Length = 465
Score = 100 bits (249), Expect = 3e-22, Method: Composition-based stats.
Identities = 52/99 (52%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 32 GTTSVYRRPKKKAADMVDMPLDADVFAEPAGRNAPQQVHITLGDQTGTAMTVSWVTMEEA 91
G TS YRR + VDMPLDADVF P GRNAPQQVHIT G+ GTAM +SWVT E
Sbjct: 26 GETSEYRR---QLGSAVDMPLDADVFRAPPGRNAPQQVHITQGNHDGTAMIISWVTTIEP 82
Query: 92 GNSTVLYGXXXXXXXXXXXXXXXXXXXXXXXSGFIHHCT 130
G+STVLYG SG+IHHCT
Sbjct: 83 GSSTVLYGTSEDNLNFSADGKHTQYTFYNYTSGYIHHCT 121
>Os06g0643900 Similar to Acid phosphatase precursor
Length = 476
Score = 81.3 bits (199), Expect = 2e-16, Method: Composition-based stats.
Identities = 43/98 (43%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 32 GTTSVYRRPKKKAADMVDMPLDADVFAEPAGRNAPQQVHITLGDQTGTAMTVSWVTMEEA 91
G TS Y R + + D+ PL+++ FA P G NAPQQVHIT GD G A+ VSWVT+ E
Sbjct: 23 GRTSSYVRTEYPSTDI---PLESEWFAVPNGYNAPQQVHITQGDYNGKAVIVSWVTVAEP 79
Query: 92 GNSTVLYGXXXXXXXXXXXXXXXXXXXXXXXSGFIHHC 129
G S VLYG SG+IHHC
Sbjct: 80 GTSEVLYGKNEHQYDQRVEGTVTNYTFYDYKSGYIHHC 117
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.130 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,317,598
Number of extensions: 105243
Number of successful extensions: 217
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 4
Length of query: 135
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 45
Effective length of database: 12,336,541
Effective search space: 555144345
Effective search space used: 555144345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 150 (62.4 bits)