Os06g0643900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Acid phosphatase precursor.
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Os06g0643900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Acid phosphatase precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.3 | 0.222 | 12.2 | 0.0794 | 0.546 | -0.533 | -0.46 | -1.09 | 0.07 | 13.6 | 1.249 | 15942 | -- | -- |
| 23.78 | 0.227 | 12.2 | 0.202 | 0.516 | -0.319 | -0.573 | -- | 0.119 | 13.6 | 2.501 | 12942 | -- | -- |
| 22.12 | 0.219 | 12.2 | 0.082 | 0.569 | -0.519 | -- | -1.06 | 0.0653 | 13.7 | 1.188 | 24807 | -- | -- |
| 23.85 | 0.227 | 12.2 | 0.194 | 0.523 | -0.357 | -- | -- | 0.121 | 13.6 | 2.502 | 24508 | -- | -- |
| 35.45 | 0.279 | 12.2 | 0.148 | -- | 0.305 | -- | -0.514 | -0.0345 | -- | 1.39 | 47520 | -- | -- |
| 28.4 | 0.25 | 12.2 | 0.19 | 0.543 | -- | -0.487 | -- | -0.00876 | 13.7 | -- | -- | -- | -- |
| 29.34 | 0.254 | 12.2 | 0.174 | 0.543 | -- | -- | -- | -0.0115 | 13.7 | -- | -- | -- | -- |
| 36.87 | 0.284 | 12.2 | 0.16 | -- | 0.305 | -- | -- | -0.0387 | -- | 2.39 | 24246 | -- | -- |
| 25.57 | 0.236 | 12.1 | -- | 0.544 | -0.391 | -- | -- | 0.151 | 13.6 | 2.5 | 24641 | -- | -- |
| 47.31 | 0.321 | 12.2 | 0.152 | -- | -- | -- | -- | -0.0236 | -- | -- | -- | -- | -- |
| 30.14 | 0.257 | 12.2 | -- | 0.54 | -- | -- | -- | -0.0308 | 13.7 | -- | -- | -- | -- |
| 36.25 | 0.281 | 12.2 | -- | -- | 0.342 | -- | -- | -0.0269 | -- | 10.01 | 19920 | -- | -- |
| 47.91 | 0.323 | 12.2 | -- | -- | -- | -- | -- | -0.0404 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.38 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 2 | 4 |
| 2 | 21.38 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 2 | 4 |
| 6 | 21.40 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 2 | 4 |
| 8 | 21.40 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 2 | 4 |
| 46 | 21.52 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 47 | 21.52 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 7 |
| 53 | 21.54 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 57 | 21.54 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 58 | 21.54 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 76 | 21.58 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 8 |
| 79 | 21.59 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 8 |
| 82 | 21.59 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 8 |
| 104 | 21.62 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 12 |
| 111 | 21.64 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 8 |
| 122 | 21.65 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 123 | 21.65 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 162 | 21.71 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 177 | 21.73 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 178 | 21.73 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 179 | 21.73 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 197 | 21.74 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 2 | 4 |
| 209 | 21.74 | humidity | 60.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 214 | 21.74 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 2 | 12 |
| 263 | 21.79 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 291 | 21.81 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 292 | 21.82 | wind | 1.0 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 308 | 21.83 | radiation | 1.0 | 43200 | < th | dose independent | sin | 11 | NA |
| 347 | 21.86 | radiation | 1.0 | 43200 | > th | dose independent | sin | 11 | NA |
| 348 | 21.86 | wind | 1.0 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 362 | 21.87 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 7 | NA |
| 365 | 21.87 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 371 | 21.88 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 377 | 21.88 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 403 | 21.90 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 416 | 21.90 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 420 | 21.90 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 15 |
| 421 | 21.91 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 451 | 21.91 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 512 | 21.93 | radiation | 1.0 | 43200 | < th | dose dependent | sin | 12 | NA |
| 567 | 21.95 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 576 | 21.95 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 17 | 3 |
| 620 | 21.96 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 8 | 12 |
| 630 | 21.96 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 672 | 21.97 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 711 | 21.97 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 2 | 12 |
| 712 | 21.97 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 2 | 12 |
| 735 | 21.97 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 2 | 12 |
| 747 | 21.98 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 748 | 21.98 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 798 | 22.00 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 804 | 22.01 | humidity | 80.0 | 43200 | < th | dose independent | sin | 21 | NA |
| 805 | 22.01 | precipitation | 0.1 | 43200 | > th | dose independent | sin | 8 | NA |
| 806 | 22.01 | precipitation | 0.1 | 43200 | < th | dose independent | sin | 8 | NA |
| 808 | 22.01 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 858 | 22.01 | precipitation | 0.1 | 43200 | < th | dose dependent | sin | 8 | NA |
| 859 | 22.01 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 877 | 22.02 | wind | 1.0 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 878 | 22.02 | wind | 1.0 | 43200 | < th | dose independent | rect. | 22 | 2 |
| 891 | 22.02 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 13 |
| 892 | 22.02 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 13 |
| 916 | 22.02 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 13 |
| 920 | 22.03 | humidity | 80.0 | 43200 | > th | dose independent | sin | 20 | NA |
| 925 | 22.03 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 942 | 22.03 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 943 | 22.03 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 972 | 22.03 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 11 |