BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0622500 Os12g0622500|AK101363
(487 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0622500 Spo11/DNA topoisomerase VI, subunit A family p... 992 0.0
Os03g0284800 Spo11/DNA topoisomerase VI, subunit A family p... 187 2e-47
Os03g0752200 Similar to AtSPO11-1 150 2e-36
Os08g0156900 Spo11/DNA topoisomerase VI, subunit A family p... 118 1e-26
Os11g0545300 Peptidase C19, ubiquitin carboxyl-terminal hyd... 99 5e-21
>Os12g0622500 Spo11/DNA topoisomerase VI, subunit A family protein
Length = 487
Score = 992 bits (2565), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/487 (97%), Positives = 477/487 (97%)
Query: 1 MDDSTDDDSYHPRKHYAYDRQVSSSRWRTSREYIRGPGPETHTTESAQDGQDPPAGVXXX 60
MDDSTDDDSYHPRKHYAYDRQVSSSRWRTSREYIRGPGPETHTTESAQDGQDPPAGV
Sbjct: 1 MDDSTDDDSYHPRKHYAYDRQVSSSRWRTSREYIRGPGPETHTTESAQDGQDPPAGVYSY 60
Query: 61 XXXXXXXNDPQVQGHFVPEIQKYNPYVIFKGEQLPVPIWELPEEKVQDFHDRYFIAKDKS 120
NDPQVQGHFVPEIQKYNPYVIFKGEQLPVPIWELPEEKVQDFHDRYFIAKDKS
Sbjct: 61 GYFSGSGNDPQVQGHFVPEIQKYNPYVIFKGEQLPVPIWELPEEKVQDFHDRYFIAKDKS 120
Query: 121 RVEARKTLNRLLEGNINTIERGHGYKFNIPKYTDNMEFNEEVKVSLAKAGKTISRSFCNA 180
RVEARKTLNRLLEGNINTIERGHGYKFNIPKYTDNMEFNEEVKVSLAKAGKTISRSFCNA
Sbjct: 121 RVEARKTLNRLLEGNINTIERGHGYKFNIPKYTDNMEFNEEVKVSLAKAGKTISRSFCNA 180
Query: 181 NQREVASRTGYTIDLIERTLGAGLNISKRTVLYTNKDLFGDQSKSDQAINDICALTNIRR 240
NQREVASRTGYTIDLIERTLGAGLNISKRTVLYTNKDLFGDQSKSDQAINDICALTNIRR
Sbjct: 181 NQREVASRTGYTIDLIERTLGAGLNISKRTVLYTNKDLFGDQSKSDQAINDICALTNIRR 240
Query: 241 GSLGIIAAEKGIVVGNIFLELTNGKSISCSIGVQIPHRLDQIKDVCVEIGSRNIEYILVV 300
GSLGIIAAEKGIVVGNIFLELTNGKSISCSIGVQIPHRLDQIKDVCVEIGSRNIEYILVV
Sbjct: 241 GSLGIIAAEKGIVVGNIFLELTNGKSISCSIGVQIPHRLDQIKDVCVEIGSRNIEYILVV 300
Query: 301 EKHTMLNYLLEMDYHTNNNCIILTGCGMPTLQTRDFLRFLKQRTGLPVFGLCDPDPEGIS 360
EKHTMLNYLLEMDYHTNNNCIILTGCGMPTLQTRDFLRFLKQRTGLPVFGLCDPDPEGIS
Sbjct: 301 EKHTMLNYLLEMDYHTNNNCIILTGCGMPTLQTRDFLRFLKQRTGLPVFGLCDPDPEGIS 360
Query: 361 ILATYARGSCNSAYDNFNISVPSICWVGLSSSDMIKLNLSETNYSRLSREDKTMLKNLWQ 420
ILATYARGSCNSAYDNFNISVPSICWVGLSSSDMIKLNLSETNYSRLSREDKTMLKNLWQ
Sbjct: 361 ILATYARGSCNSAYDNFNISVPSICWVGLSSSDMIKLNLSETNYSRLSREDKTMLKNLWQ 420
Query: 421 DDLSDVWKRRIEEMISFDKKASFEAIHSLGFDYFATNLLPDMINKVREGYVQVQEKKEPQ 480
DDLSDVWKRRIEEMISFDKKASFEAIHSLGFDYFATNLLPDMINKVREGYVQVQEKKEPQ
Sbjct: 421 DDLSDVWKRRIEEMISFDKKASFEAIHSLGFDYFATNLLPDMINKVREGYVQVQEKKEPQ 480
Query: 481 DTEASED 487
DTEASED
Sbjct: 481 DTEASED 487
>Os03g0284800 Spo11/DNA topoisomerase VI, subunit A family protein
Length = 442
Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 112/357 (31%), Positives = 184/357 (51%), Gaps = 17/357 (4%)
Query: 113 YFIAKDKSRVEARKTLNRLLEGNINTIERGHGYKFNIP-KYTDNMEFNEEV-KVSLAKAG 170
Y + D+ +NRL+ +I G G+ F +P + N + ++ ++ L +
Sbjct: 85 YIVVADQDSASVTSRINRLVLAAARSILSGRGFSFAVPSRAASNQVYLPDLDRIVLVR-- 142
Query: 171 KTISRSFCNANQREVASRTGYTIDLIERTLGAGLNISKRTVLYTNKDLFGDQSKSDQAIN 230
+ +R F N A+ T + L+ L G++++KR + YT+ LFGDQ++SD ++
Sbjct: 143 RESARPFANVATARKATITARVLSLVHAVLRRGIHVTKRDLFYTDVKLFGDQAQSDAVLD 202
Query: 231 DICALTNIRRGSLGIIAAEKGIVVGNIFLELTNGKSISCS-IGV---QIPHRLDQIKDVC 286
D+ + R SL ++A+EKG+VVG + +G I C+ +GV IP +D++ +
Sbjct: 203 DVSCMLGCTRSSLHVVASEKGVVVGRLTFA-DDGDRIDCTRMGVGGKAIPPNIDRVSGI- 260
Query: 287 VEIGSRNIEYILVVEKHTMLNYLLEMDYHTNNNCIILTGCGMPTLQTRDFLRFLKQRTGL 346
+ +IL+VEK L E ++ CIILT G P + TR FLR LK L
Sbjct: 261 ----ESDALFILLVEKDAAFMRLAEDRFYNRFPCIILTAKGQPDVATRLFLRRLKVELKL 316
Query: 347 PVFGLCDPDPEGISILATYARGSCNSAYDNFNISVPSICWVGLSSSDMIKLNLSETNYSR 406
PV L D DP G+ IL+ Y GS N +YD+ N++ P I W+G+ SD+ K + E
Sbjct: 317 PVLALVDSDPYGLKILSVYMCGSKNMSYDSANLTTPDIKWLGVRPSDLDKYRVPEQCRLP 376
Query: 407 LSREDKTMLKNLWQDDL---SDVWKRRIEEMISFDKKASFEAIHSLGFDYFATNLLP 460
++ D + K L ++D ++ W + +E M+ +KA +A+ S GF Y LP
Sbjct: 377 MTDHDIKVGKELLEEDFVKQNEGWVKELETMLRTRQKAEIQALSSFGFQYLTEVYLP 433
>Os03g0752200 Similar to AtSPO11-1
Length = 381
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/273 (34%), Positives = 139/273 (50%), Gaps = 16/273 (5%)
Query: 205 NISKRTVLYTNKDLFGDQSKSDQAINDICALTNIRRGSLGIIAAEKGIVVGNI-FLELTN 263
+ SKR + Y +F +Q+ D+AINDIC L R +L ++ KG+V+G I FLE
Sbjct: 115 HCSKRDIYYMYPSIFQEQAVVDRAINDICVLFKCSRHNLNVVPVAKGLVMGWIRFLE--G 172
Query: 264 GKSISCSIGV----QIPHRLDQIKDVCVEIGSRNIEYILVVEKHTMLNYLLEMDYHTNNN 319
K + C V IP ++ IKDV V + +YIL+VEK T+ L + N
Sbjct: 173 EKEVYCVTNVNAAFSIPVSIEAIKDV-VSVA----DYILIVEKETVFQRLANDKFCERNR 227
Query: 320 CIILTGCGMPTLQTRDFLRFLKQRTGLPVFGLCDPDPEGISILATYARGSCNSAYDNFNI 379
CI++TG G P + TR FLR+L ++ LPV+ L D DP G ILATY GS AYD +
Sbjct: 228 CIVITGRGYPDIPTRRFLRYLVEQLHLPVYCLVDADPYGFDILATYKFGSLQLAYDANFL 287
Query: 380 SVPSICWVGLSSSDMIKLNLSETNYSRLSREDKT----MLKNLWQDDLSDVWKRRIEEMI 435
VP I W+G+ +SD L + LS ED+ +L + + W+ +E M+
Sbjct: 288 RVPDIRWLGVFTSDFEDYRLPDCCLLHLSSEDRRKAEGILSRCYLHREAPQWRLELEAML 347
Query: 436 SFDKKASFEAIHSLGFDYFATNLLPDMINKVRE 468
K EA+ + + + +P I + R
Sbjct: 348 QKGVKFEIEALSACSISFLSEEYIPKKIKQGRH 380
>Os08g0156900 Spo11/DNA topoisomerase VI, subunit A family protein
Length = 385
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 143/290 (49%), Gaps = 16/290 (5%)
Query: 175 RSFCNANQREVASRTGYTIDLIERTLGAGLNISKRTVLYT----NKDLFGDQSKSDQAIN 230
RS AN + R +++ + LG G ++ R + YT + F Q +Q +
Sbjct: 88 RSLTRANDAKAFVRVWKVMEMCYKILGEGKLVTLRELFYTLLSESPTYFTCQRHVNQTVQ 147
Query: 231 DICALTNIRRGSLGIIAAEKGIVVGNIFLELTNGKSISCSI----GVQIPHRLDQIKDVC 286
D+ +L R SLGI+A+ +G ++G + ++ + + CSI G I L+ + +
Sbjct: 148 DVVSLLRCTRQSLGIMASSRGALIGRLVVQGPEEEHVDCSILGPSGHAITGDLNVLSKL- 206
Query: 287 VEIGSRNIEYILVVEKHTMLNYLLEMDYHTNNNCIILTGCGMPTLQTRDFLRFLKQR-TG 345
I S + YI+VVEK + L E +++ CI++T G P L TR L L Q
Sbjct: 207 --IFSSDARYIIVVEKDAIFQRLAEDRIYSHLPCILITAKGYPDLATRFILHRLSQTYPN 264
Query: 346 LPVFGLCDPDPEGISILATYARGSCNSAYDNFNISVPSICWVGLSSSDMIKLNLSETNYS 405
+P+F L D +P G++IL TY GS + +++ + ++ W+GL D+ + ++ Y
Sbjct: 265 MPIFALVDWNPAGLAILCTYKYGSISMGLESYRYAC-NVKWLGLRGDDLQL--IPQSAYQ 321
Query: 406 RLSREDKTMLKNLWQDD-LSDVWKRRIEEMISFDKKASFEAIHSLGFDYF 454
L D + K+L L D + + M+ K+A EA++S GFD+
Sbjct: 322 ELKPRDLQIAKSLLSSKFLQDKHRAELTLMLETGKRAEIEALYSHGFDFL 371
>Os11g0545300 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 500
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 128/261 (49%), Gaps = 13/261 (4%)
Query: 107 QDFHDRYFIAKDKSRVEARKTLNRLLEGNINTIERGHGYKFNIPKYTDNMEFNEEV-KVS 165
QD ++Y I D+ + + R+ N E Y FN+P TD +++ + +
Sbjct: 245 QDILEKYIICMDRDSSDVSE---RIRNAMRNCNESRQEYHFNLPT-TDGPFYDDNLGQYC 300
Query: 166 LAKAGK--TISRSFCNANQREVASRTGYTIDLIERTLGAGLNISKRTVLYTNKDLFGDQS 223
L + + TIS S +R+ A R + + I + L I + Y K FG+ S
Sbjct: 301 LLRGARFRTISTSSNVEAKRDRAVRMHFLLSEILKLLQLKKVIDVGAIGYLEKFKFGNYS 360
Query: 224 KSD--QAINDICALTNIRRGSLGIIAAEKGIVVGNIFLELTNGKSISCSI-GVQIPHRLD 280
+S + IND C L R SL I +G ++G + ++ I S+ VQIPH +
Sbjct: 361 RSALLRRINDACMLLGTNRLSLNISVMSRGSIIGPVLFKVGEDVMIDASLRAVQIPHDIH 420
Query: 281 QIKDVCVEIGSRNIEYILVVEKHTMLNYLLEMDYHTNNNCIILTGCGMPTLQTRDFLRFL 340
+ + ++ + + ++LVVEK ++ N L+ +++H +NCII+TGCG P + TR + L
Sbjct: 421 LVDHIKLK---KPVSFVLVVEKLSIFNMLVNLNFHVTHNCIIITGCGKPDMATRGAVFKL 477
Query: 341 KQRTGLPVFGLCDPDPEGISI 361
+ V+ L D D +G+ I
Sbjct: 478 NYCLPVKVYILADLDLDGLQI 498
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.135 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,438,586
Number of extensions: 677546
Number of successful extensions: 1355
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1345
Number of HSP's successfully gapped: 5
Length of query: 487
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 382
Effective length of database: 11,553,331
Effective search space: 4413372442
Effective search space used: 4413372442
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)